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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9918#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1392 fasta sequence
[GGCAGATCTCCCCATCTCCGGGACGGGACCCGGCGCGCACGCGACCCGACGCGACGACGCAAGCAGCAGTGGTGGGTAAGGGTGGACTCGACTCCGGCCGTCGCGATGGCGGCCGCCGGCTGGCCGCTCTCCTCCTCCGTCGCCGACCTCCTCCCCGCCTCCCTCTCGCTCACCCTCCTCCTCGCCTCCCTCGTGGTCGTCGTGGTGCTGGCCGCCGCCGCCTTCTTCTTCGAGCACATCCGCAAGATCGGATGCACGCACTCGCTGGAGAGGACTGAAGTCTCGGCCGCTTTCTTCGAGGACCCCAACTCGCTCAACAAGGTTCGTTGCCCTTCAATTTACGACCCTGCTGAGAAGTACATTTCGTTGATCATCCCCGCTTATAACGAGGAGCACCGGCTTCCTGAGGCTCTCACAGAAACACTCAACTACCTGAAACAACGTTCAGCTGTCGAGAAGTCATTTACTTACGAGGTCTTGATCGTTGATGATGGAAGTACTGATCATACATCAAAAGTTGCCTTCGAGTTTGTAAGGAAACATAAAATTGATAATGTTAGAGTTCTTCTACTTGGGAGAAACCATGGTAAAGGCGAAGCAGTCAGAAAAGGCATGCTCCATTCACGTGGTGAACTGTTACTCATGCTTGATGCTGATGGGGCAACTAAGGTTACTGATTTGGAAAAGCTTGAAGCCCAGGTTCGCGCATTGGCTAAAAAGGCTGAGTCCAGCCTAGCACCATCTAGCAGTCCATCTCAGAGACTATCTGATGCTGAAATTGCTGTTTTTGGTTCACGTGCTCATCTGGAGAAGCAGGCTCTTGCCACAAGGAAATGGTATCGGAATTTTCTTATGAAAGGTTTCCACCTGGTAGTTTTATTGACAGCTGGTCCTGGGATCAGAGACACACAGTGTGGTTTCAAGATGTTTACTCGAGCTGCTGCAAGGAAACTTTTTACAAATATCAGATTGAAGAGGTGGTGTTTTGATGTTGAGCTTGTATACCTATGCAAGCATCTCAGGATCCCAATGGCTGAAGTATCTGTAAACT-GGACTGAAATACCTGGATCCAAAGTGCGTATGACAAGCATCCTGCATAT-GGTATTTGAGCTCCTGCTGATCAAAGTAGGTTATGGACTGAGCATATGGAAAATCTATTCATAGACCATATGCACGGTACGCTGACAATCACCATAGCTTATCATCACTGGACTGTATACCAAGCTTAGTCTCACATGTAAAATTTTTCCAAGATTTTCACCTAGAGAGAATCCATTTGTGGCGCTGAGTATTCCATCATAGATTTCAACAAAGATATAGATCAC-GTGTATTGTTCCTGCTGATAAAGGTCTTTAATCATTTTTTTAGCATTTTAAAAAAAACAAAAAAGGA]
[+] EMBL AK102290 [GGCAGATCTCCCCATCTCCGGGACGGGACCCGGCGCGCACGCGACCCGACGCGACGACGCAAGCAGCAGTGGTGGGTAAGGGTGGACTCGACTCCGGCCGTCGCGATGGCGGCCGCCGGCTGGCCGCTCTCCTCCTCCGTCGCCGACCTCCTCCCCGCCTCCCTCTCGCTCACCCTCCTCCTCGCCTCCCTCGTGGTCGTCGTGGTGCTGGCCGCCGCCGCCTTCTTCTTCGAGCACATCCGCAAGATCGGATGCACGCACTCGCTGGAGAGGACTGAAGTCTCGGCCGCTTTCTTCGAGGACCCCAACTCGCTCAACAAGGTTCGTTGCCCTTCAATTTACGACCCTGCTGAGAAGTACATTTCGTTGATCATCCCCGCTTATAACGAGGAGCACCGGCTTCCTGAGGCTCTCACAGAAACACTCAACTACCTGAAACAACGTTCAGCTGTCGAGAAGTCATTTACTTACGAGGTCTTGATCGTTGATGATGGAAGTACTGATCATACATCAAAAGTTGCCTTCGAGTTTGTAAGGAAACATAAAATTGATAATGTTAGAGTTCTTCTACTTGGGAGAAACCATGGTAAAGGCGAAGCAGTCAGAAAAGGCATGCTCCATTCACGTGGTGAACTGTTACTCATGCTTGATGCTGATGGGGCAACTAAGGTTACTGATTTGGAAAAGCTTGAAGCCCAGGTTCGCGCATTGGCTAAAAAGGCTGAGTCCAGCCTAGCACCATCTAGCAGTCCATCTCAGAGACTATCTGATGCTGAAATTGCTGTTTTTGGTTCACGTGCTCATCTGGAGAAGCAGGCTCTTGCCACAAGGAAATGGTATCGGAATTTTCTTATGAAAGGTTTCCACCTGGTAGTTTTATTGACAGCTGGTCCTGGGATCAGAGACACACAGTGTGGTTTCAAGATGTTTACTCGAGCTGCTGCAAGGAAACTTTTTACAAATATCAGATTGAAGAGGTGGTGTTTTGATGTTGAGCTTGTATACCTATGCAAGCATCTCAGGATCCCAATGGCTGAAGTATCTGTAAACT GGACTGAAATACCTGGATCCAAAGTGCGTATGACAAGCATCCTGCATAT GGTATTTGAGCTCCTGCTGATCAAAGTAGGTTATGGACTGAGCATATGGAAAATCTATTCATAGACCATATGCACGGTACGCTGACAATCACCATAGCTTATCATCACTGGACTGTATACCAAGCTTAGTCTCACATGTAAAATTTTTCCAAGATTTTCACCTAGAGAGAATCCATTTGTGGCGCTGAGTATTCCATCATAGATTTCAACAAAGATATAGATCAC GTGTAT ]
[+] EMBL CB656726 [ CCCCCTCTCCGGGACGGGACCCGGCGCGCACGCGACCCGACGCGACGACGCAAGCAGCAGTGGTGGGTAAGGGTGGACTCGACTCCGGCCGTCGCGATGGCGGCCGCCGGCTGGCCGCTCTCCTCCTCCGTCGCCGACCTCCTCCCCGCCTCCCTCTCGCTCACCCTCCTCCTCGCCTCCCTCGTGGTCGTCGTGGTGCTGGCCGCCGCCGCCTTCTTCTTCGAGCACATCCGCAAGATCGGATGCACGCACTCGCTGGAGAGGACTGAAGTCTCGGCCGCTTTCTTCGAGGACCCCAACTCGCTCAACAAGGTTCGTTGCCCTTCAATTTACGACCCTGCTGAGAAGTACATTTCGTTGATCATCCCCGCTTATAACGAGGAGCACCGGCTTCCTGAGGCTCTCACAGAAACACTCAACTACCTGAAACAACGTTCAGCTGTCGAGAAGTCATTTACTTACGAGGTCTTGATCGTTGATGATGGAAGTACTGATCATACATCAAAAGTTGCCTTCGAGTTTGTAAGGAAACATAAAATTGATAATGTTAGAGTTCTTCTACTTGGGAGAAACCATGGTAAAGGCGAAGCAGTCAGAAAAGGCATGCTCCATTCACGTGGTGAACTGTTACTCATGCTTGATGCTGATGGGGCAACTAAGGTTACTGATTTGGAAAAGCTTGAAGCCCAGGTTCGCGCATTGGCTAAAAAGGCTGAGTCCAGCCTAGCACCATCTAGCAGTCCATCTCAGAGACTATCTGATGCTNGAATTGCTGTTTTTGGTTCAC ]
[-] EMBL CB678881 [ AGGCGAAGCAGTCAGAAAAGGCATGCTCCATTCACGTGGTGAACTGTTACTCATGCTTGATGCTGATGGGGCAACTAAGGTTATTGATTTGGAAAAGCTTGAAGCCCAGGTTCGCGCATTGGCTAAAAAGGCTGAGTCCAGCCTAGCACCATTTAGCAGTCCATCTCAGAGACTATCTGATGCTGAAATTGCTGTTTTTGGTTCACGTGCTCATCTGGAGAAGCAGGCTCTTGCCACAAGGAAATGGTATCGGAATTTTCTTATGAAAGGTTTCCACCTGGTAGTTTTATTGACAGCTGGTCCTGGGATCAGAGACACACAGTGTGGTTTCAAGATGTTTACTCGAGCTGCTGCAAGGAAACTTTTTACAAATATCAGATTGAAGAGGTGGTGTTTTGATGTTGAGCTTGTATACCTATGCAAGCATCTCAGGATCCCAATGGCTGAAGTATCTGTAAACT GGACTGAAATACCTGGATCCAAAGTGGGTATGACAAGCATCCTGCATAT GGTATTTGAGCTCCTGCTGATCAAAGTAGGTTATGGACTGAGCATATGGAAAATCTATTCATAGACCATATGCACGGTACGCTGACAATCCCCATAGCTTATCATCACTGGACTGTATACCAAGCTTAGTCTCACATGTAAAATTTTTCCAAGATTTTCCCCTAGAGAGAATCCATTTGTGGCGCTGAGTATTCCATCATAGATTTCAACAAAGATATAGATCAC GTGTATTGTTCCTGCTGATAAAGGTCTTTAATCATTTTTTTAGCATTTTAAAAAAAACAAAAAAGGA]
[+] EMBL OSC0811 [ TGAAGCCCAGGTTCGCGCATTGGCTAAAAAGGCTGAGTCCAGCCTAGCACCATCTAGCAGTCCATCTCAGAGACTATCTGATGCTGAAATTGCTGTTTTTGGTTCACGTGCTCATCTGGAGAAGCAGGCTCTTGCCACAAGGAAATGGTATCGGAATTTTCTTATGAAAGGTTTCCACCTGGTAGTTTTATTGACAGCTGGTCCTGGGATCAGAGACACACAGTGTGGTTTCAAGATGTTTACTCGAGCTGCTGCAAGGAAACTTTTTACAAATATCAGATTGAAGAGGTGGTGTTTTGATGTTGAGCTTGTATACCTATGCAAGCATCTCAGGATCCCAATGGCTGAAGTATCTGTAAACTGGGACTGAAATACCTGGATCCCAAGTGCGTATGACAAGCATCCTGCATATGGGTATTTTAGCTCCTGCTGATCAAAGTAGGTT ]
[+] EMBL AU174353 [ ACAGTGTGGTTTCAAGATGTTTACTCGAGCTGCTGCAAGGAAACTTTTTACAAATATCAGATTGAAGAGGTGGTGTTTTGATGTTGAGCTTGTATACCTATGCAAGCATCTCAGGATCCCAATGGCTGAAGTATCTGTAAACT GGACTGAAATACCTGGATCCAAAGTGCGTATGACAAGCATCCTGCATAT GGTATTTGAGCTCCTGCTGATCAAAGTAGGTTATGGACTGAGCATATGGAAAATCTATTCATAGACCATATGCACGGTACGCTGACAATCACCATAGCTTATCATCACTGGACTGTATACCAAGCTTAGTCTCACATGTAAAATTTTTCCAAGATTTTCACCTAGAGAGAATCCATTTGTGGCGCTGAGTATTCCATCATAGATTTCAACAAAGATATAGATCACTGTGTATTGTTCCTGCTAAAAA ]
[-] EMBL D42582 [ AAGT CGTATGACAAGCATCCTGCATAT GGTATTTGAGCTCCTGCTGATCAAAGTAGGTTATGGACTGAGCATATGGAAAATCTATTCATAGACCATATGCACGGTACGCTGACAATCACCATAGCTTATCATCACTGGACTGTATACCAAGCTTAGTCTCACATGTAAAATTTTTCCAAGATTTTCACCTAGAGAGAATCCATTTGTGGNGCTGAGTATTCCATCATAGATTTCAACAAAGATATAGATCAC GTGTATTGTTCCTGCTGATGAAATTCTT ]
consensusID : consensus_9918#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence
[AAAAGGCATGCTCCATTCACGTGGTGAACTGTTACTCATGCTTGATGCTGATGGGGCAACTAAGGTTACTGATTTGGAAAAGCTTGAAGCCCAGGTCTGTCATAAGTTAAATCAAAACATGTTTTATAAAGTTTTGTTATGCATACTTTGATCGTGATTGGTAACATCTTGGAATCATATCGTGCTCCTAGGTTCGCGCATTGGCTAAAAAGGCTGAGTCCAGCCTAGCACCATCTAACAGTCCATCTCAGAGACTATCTGATGCTGAAATNGCTGTTTTTGGTTCACGTGCTCATCTGGAGAAGCAGGCTCTTGCCACAAGGAAATGGTATCGGAATTTTCTTATGAAAGGTTTCCACCTGGTAGTNTTATTGACAGCTGGTCCTGGGATCAGAGACACACAGTGTGGTNTCAAGATGTTTACTCGAGCTGCTGCAAGGAAACTTTTTACAAATATCAGATNGAAGAGGTGGTGTTTTGATGTTGAGCTTGTATACCTATGCAAGCACCTCAGGATCCCAATGGCTGAAGTATCTGTANACTGGACTGAAATACCTGGATCCAAAGTGCGTATACAAGCATCTGCATATGGTATTGAGCT]
[+] EMBL CA753095 [AAAAGGCATGCTCCATTCACGTGGTGAACTGTTACTCATGCTTGATGCTGATGGGGCAACTAAGGTTACTGATTTGGAAAAGCTTGAAGCCCAGGTCTGTCATAAGTTAAATCAAAACATGTTTTATAAAGTTTTGTTATGCATACTTTGATCGTGATTGGTAACATCTTGGAATCATATCGTGCTCCTAGGTTCGCGCATTGGCTAAAAAGGCTGAGTCCAGCCTAGCACCATCTAACAGTCCATCTCAGAGACTATCTGATGCTGAAATNGCTGTTTTTGGTTCACGTGCTCATCTGGAGAAGCAGGCTCTTGCCACAAGGAAATGGTATCGGAATTTTCTTATGAAAGGTTTCCACCTGGTAGTNTTATTGACAGCTGGTCCTGGGATCAGAGACACACAGTGTGGTNTCAAGATGTTTACTCGAGCTGCTGCAAGGAAACTTTTTACAAATATCAGATNGAAGAGGTGGTGTTTTGATGTTGAGCTTGTATACCTATGCAAGCACCTCAGGATCCCAATGGCTGAAGTATCTGTANACTGGACTGAAATACCTGGATCCAAAGTGCGTATACAAGCATCTGCATATGGTATTGAGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9918#0 GGCAGATCTCCCCATCTCCGGGACGGGACCCGGCGCGCACGCGACCCGACGCGACGACGC 60
consensus_9918#1 ------------------------------------------------------------
consensus_9918#0 AAGCAGCAGTGGTGGGTAAGGGTGGACTCGACTCCGGCCGTCGCGATGGCGGCCGCCGGC 120
consensus_9918#1 ------------------------------------------------------------
consensus_9918#0 TGGCCGCTCTCCTCCTCCGTCGCCGACCTCCTCCCCGCCTCCCTCTCGCTCACCCTCCTC 180
consensus_9918#1 ------------------------------------------------------------
consensus_9918#0 CTCGCCTCCCTCGTGGTCGTCGTGGTGCTGGCCGCCGCCGCCTTCTTCTTCGAGCACATC 240
consensus_9918#1 ------------------------------------------------------------
consensus_9918#0 CGCAAGATCGGATGCACGCACTCGCTGGAGAGGACTGAAGTCTCGGCCGCTTTCTTCGAG 300
consensus_9918#1 ------------------------------------------------------------
consensus_9918#0 GACCCCAACTCGCTCAACAAGGTTCGTTGCCCTTCAATTTACGACCCTGCTGAGAAGTAC 360
consensus_9918#1 ------------------------------------------------------------
consensus_9918#0 ATTTCGTTGATCATCCCCGCTTATAACGAGGAGCACCGGCTTCCTGAGGCTCTCACAGAA 420
consensus_9918#1 ------------------------------------------------------------
consensus_9918#0 ACACTCAACTACCTGAAACAACGTTCAGCTGTCGAGAAGTCATTTACTTACGAGGTCTTG 480
consensus_9918#1 ------------------------------------------------------------
consensus_9918#0 ATCGTTGATGATGGAAGTACTGATCATACATCAAAAGTTGCC-TTCGAGTTTGTAAGGAA 539
consensus_9918#1 ---------AAAAGGCATGCTCCATTCACGTGGTGAACTGTTACTCATGCTTG------- 44
* * * ** ** * * ** ** * ***
consensus_9918#0 ACATAAAATTGATAATGTTAGAGTTCTTCTACTTGGGAGAAACCATGGTAAAGGCGAAGC 599
consensus_9918#1 --ATGCTGATGGGGCAACTAAGGTTACTG-ATTTGGAAAAGCTTGAAGCCCAGGTCTGTC 101
** ** ** *** * * **** * * * *** *
consensus_9918#0 AGTCAGAAAAGGCATGCTCCATTCACGTGGTGAACTGTTACTCATGCTT-GATGCTGATG 658
consensus_9918#1 A-TAAGTTAAATCAAAACATGTTT-TATAAAGTTTTGTTATGCATACTTTGATCGTGATT 159
* * ** ** ** ** * * ***** *** *** *** ****
consensus_9918#0 GGGCAACTAAGGTTACTGATTTGGAAAAGCTTGAAGCCCAGGTTCGCGCATTGGCTAAAA 718
consensus_9918#1 GG-----TAACATCTTGGAATCATATCGTGCT----CCTAGGTTCGCGCATTGGCTAAAA 210
** *** * ** * * * ** *********************
consensus_9918#0 AGGCTGAGTCCAGCCTAGCACCATCTAGCAGTCCATCTCAGAGACTATCTGATGCTGAAA 778
consensus_9918#1 AGGCTGAGTCCAGCCTAGCACCATCTAACAGTCCATCTCAGAGACTATCTGATGCTGAAA 270
*************************** ********************************
consensus_9918#0 TTGCTGTTTTTGGTTCACGTGCTCATCTGGAGAAGCAGGCTCTTGCCACAAGGAAATGGT 838
consensus_9918#1 TNGCTGTTTTTGGTTCACGTGCTCATCTGGAGAAGCAGGCTCTTGCCACAAGGAAATGGT 330
* **********************************************************
consensus_9918#0 ATCGGAATTTTCTTATGAAAGGTTTCCACCTGGTAGTTTTATTGACAGCTGGTCCTGGGA 898
consensus_9918#1 ATCGGAATTTTCTTATGAAAGGTTTCCACCTGGTAGTNTTATTGACAGCTGGTCCTGGGA 390
************************************* **********************
consensus_9918#0 TCAGAGACACACAGTGTGGTTTCAAGATGTTTACTCGAGCTGCTGCAAGGAAACTTTTTA 958
consensus_9918#1 TCAGAGACACACAGTGTGGTNTCAAGATGTTTACTCGAGCTGCTGCAAGGAAACTTTTTA 450
******************** ***************************************
consensus_9918#0 CAAATATCAGATTGAAGAGGTGGTGTTTTGATGTTGAGCTTGTATACCTATGCAAGCATC 1018
consensus_9918#1 CAAATATCAGATNGAAGAGGTGGTGTTTTGATGTTGAGCTTGTATACCTATGCAAGCACC 510
************ ********************************************* *
consensus_9918#0 TCAGGATCCCAATGGCTGAAGTATCTGTAAACTGGACTGAAATACCTGGATCCAAAGTGC 1078
consensus_9918#1 TCAGGATCCCAATGGCTGAAGTATCTGTANACTGGACTGAAATACCTGGATCCAAAGTGC 570
***************************** ******************************
consensus_9918#0 GTATGACAAGCATCCTGCATATGGTATTTGAGCTCCTGCTGATCAAAGTAGGTTATGGAC 1138
consensus_9918#1 GTAT-ACAAGCATC-TGCATATGGTATT-GAGCT-------------------------- 601
**** ********* ************* *****
consensus_9918#0 TGAGCATATGGAAAATCTATTCATAGACCATATGCACGGTACGCTGACAATCACCATAGC 1198
consensus_9918#1 ------------------------------------------------------------
consensus_9918#0 TTATCATCACTGGACTGTATACCAAGCTTAGTCTCACATGTAAAATTTTTCCAAGATTTT 1258
consensus_9918#1 ------------------------------------------------------------
consensus_9918#0 CACCTAGAGAGAATCCATTTGTGGCGCTGAGTATTCCATCATAGATTTCAACAAAGATAT 1318
consensus_9918#1 ------------------------------------------------------------
consensus_9918#0 AGATCACGTGTATTGTTCCTGCTGATAAAGGTCTTTAATCATTTTTTTAGCATTTTAAAA 1378
consensus_9918#1 ------------------------------------------------------------
consensus_9918#0 AAAACAAAAAAGGA 1392
consensus_9918#1 --------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||