These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9921#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 579 fasta sequence [CACCGCAGCGGGCGCGCCCCACCACCGGGCCCTCCTCCCCCTCTCCGCCCTCGCCACCCCGCTCCTCCCCTTCCTTCCCCGCAGTGGTCCCGCAAAAACCCTAGCCATCCCGCC-GCCTCCGCCGCC-GACGACGACATGGA-CGACGACG-CCATCA-CGGCGCTGATGGACATCGACGACTCCCCCCGCA-GCAGC-GGCGCCGGC-GCCGTC-TTCCTCGACGACGAGGAGGACGCGGAGGTCTTCCC-CGGCCACCGCGCGGC-CC-GCGCCAACGAGGCC-CGC-GGGCC-CC-TCCCC-TTC-G-CCGGCTTCTAC-AACTCCTTC-GACGGCGCCGACTTCGACGACACCGACCTCGCCTGAGGCGCTTACGGTAACGTGTGGGGGCCGGTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTGTCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTAGATTTCT-TTTCATGTATCTCGAGACGTCGTGAGATCAATC-TGGGTACCTTTTGCTGCCGATGTTTTTGAATCTCTATGCCTTGCCTGCATTGTTGGTTGCTTGGTTAGTGCTTTTGGCT] [+] EMBL CF339980 [CACCGCAGCGGGCGCGCCCCACCACCGGGCCCTCCTCCCCCTCTCCGCCCTCGCCACCCCGCTCCTCCCCTTCCTTCCCCGCAGTGGTCCCGCAAAAACCCTAGCCATCCCGCC GCCTCCGCCGCC GACGACGACATGGA CGACGACG CCATCA CGGCGCTGATGGACATCGACGACTCCCCCCGCA GCAGC GGCGCCGGC GCCGTC TTCCTCGACGACGAGGAGGACGCGGAGGTCTTCCC CGGCCACCGCGCGGC CC GCGCCAACGAGGCC CGC GGGCC CC TCCCC TTC G CCGGCTTCTAC AACTCCTTC GACGGCGCCGACTTCGACGACACCGACCTCGCCTGAGGCGCTTACGGTAACGTGTGGGGGCCGGTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTGTCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTAGATTTCT TTTCATGTATCTCGAGACGTCGTGAGATCAATC TGGGTACCTTTTGCTGCCGATGTTTTTGAATCTCTATGCCTTGCCTGCATTGTTGGTTGCTTGGTTAGTGCTTTTGGCT] [+] EMBL AK109256 [ ACCGCAGCGGGCGCGCCCCACCACCGGGCCCTCCTCCCCCTCTCCGCCCTCGCCACCCCGCTCCTCCCCTTCCTTCCCCGCAGTGGTCCCGCAAAAACCCTAGCCATCCCGCC GCCTCCGCCGCC GACGACGACATGAA CGACGACG CCATCA CGGCGCTGATGGACATCGACGACTCCCCCCGCA GCAGC GGCGCCGGC GCCGTC TTCCTCGACGACGAGGAGGACGCGGAGGTCTTCCC CGGCCACCGCGCGGC CC GCGCCAACGAGGCC CGC GGGCC CC TCCCC TTC G CCGGCTTCTAC AACTCCTTC GACGGCGCCGACTTCGACGACACCGACCTCGCCTGAGGCGCTTACGGTAACGTGTGGGGGCCGGTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTGTCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTAGATTTCT TTTCATGTATCTCGAGACGTCGTGAGATCAATC TGGG ] [+] EMBL BI797927 [ ATCCCGCCTGCCTCCGCCGCCTGACGACGACATGGATCGACGACGTCCATCATCGGCGCTGATGGACATCGACGACTCCCCCCGCATACAGCAGGCGCCGGCAGCCGTCGTTCCTCGACGACGAGGAGGACCCGGAGGTCTTCCCACGGCCACCGCGCGGCACCAGCGCCAACGAGGCCACGCAGGGCCACCATCCCCATTCAGCCCGACTTCTACAAACTCCTTCTGACGGCGCCGACTTCGACGACCCCGACCTCCCCTGAGGCGCTTACGGTAACGTGTGGGGGCCGGTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTGTCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTGGATTTCTCTTTCATGTATCTCGAGACGTCGTGAGATCCATC TGGGTACCTTTT CTGCCGAaaaaaaaaa ] [+] EMBL AU163913 [ ACGACGACATGGA CGACGACG CCATCA CGGCGCTGATGGACATCGACGACTCCCCCCGCA GCAGC GGCGCCGGC GCCGTC TTCCTCGACGACGAGGAGGACGCGGAGGTCTTCCC CGGCCACCGCGCGGC CC G GTCAACGAGGCC CGC GGG C CC TCCCC TTC G CCGGCTTCTAC AACTCCTTC GACGGCGCCGACTTCGACGACACCGACCTCGCCTGAGGCGCTTACGGTAACGTGTGGGGGCCGGTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTGTCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTAGATTTCT TTTCATGTATCTCGAGACGTCGTGAGATCAATCTTGGGTACCTTTTGCTGCCGATGTTTTTGAAaaaaa ] consensusID : consensus_9921#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 409 fasta sequence [ACATGGACGACGACGCCATCACGGCGCTGATGGACATCGACGACTCCCCCCGCAGCAGCGGCGCCGGCGCCGTCTTCCTCGACGACGAGGAGGACGCGGAGGTCTTCCCCGGCCACCGCGCGGCCCGCGCCAACGAGGCCCGCGGGCCCCTCCCCTTCGCCGGCTTCTACAACTCCTTCGACGGCGCCGACTTCGACGACACCGACCTCGCCTGAGGCGCTTACGGTAACGTGTGGGGGCCGGTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTGTCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTAGATTTCTTTTCATGTATCTCGAGACGTCGTGAGATCAATCTGGGTACCTTTTGCTGCCGATGTTTTTGAATCAAAAAAAAAA] [+] EMBL CA753644 [ACATGGACGACGACGCCATCACGGCGCTGATGGACATCGACGACTCCCCCCGCAGCAGCGGCGCCGGCGCCGTCTTCCTCGACGACGAGGAGGACGCGGAGGTCTTCCCCGGCCACCGCGCGGCCCGCGCCAACGAGGCCCGCGGGCCCCTCCCCTTCGCCGGCTTCTACAACTCCTTCGACGGCGCCGACTTCGACGACACCGACCTCGCCTGAGGCGCTTACGGTAACGTGTGGGGGCCGGTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTGTCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTAGATTTCTTTTCATGTATCTCGAGACGTCGTGAGATCAATCTGGGTACCTTTTGCTGCCGATGTTTTTGAATCAAAAAAAAAA] consensusID : consensus_9921#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 350 fasta sequence [CAAGGCACCGCAGCGGGCGCGCCCCACCACCGGGCCCTCCTCCCCCTCTCCGCCCTCGCCACCCCGCTCCTCCCCTTCCTTCCCCGCAGTGGTCCCGCAAAAACCCTAGCCATCCCGCCGCCTCCGNCGCCGACGACGACATGGACGACGACGNCATCACGGCGCTGATGGACATCGACGACTCCCCCCGCAGCAGCGGCGNCGNCGCGTCTTCCTCGACGACGAGGAGGACGNGNAGGTCTTNCCCGGNCANCGCGCGGNCCGCGCAACGAGGNCCGCGGGCANCTTACNCTTNGNCGGCTTCTACAANTNCTTCGACGGCGNCGACTTTGACGGCANCGAANCTCGNC] [+] EMBL OSC16062 [CAAGGCACCGCAGCGGGCGCGCCCCACCACCGGGCCCTCCTCCCCCTCTCCGCCCTCGCCACCCCGCTCCTCCCCTTCCTTCCCCGCAGTGGTCCCGCAAAAACCCTAGCCATCCCGCCGCCTCCGNCGCCGACGACGACATGGACGACGACGNCATCACGGCGCTGATGGACATCGACGACTCCCCCCGCAGCAGCGGCGNCGNCGCGTCTTCCTCGACGACGAGGAGGACGNGNAGGTCTTNCCCGGNCANCGCGCGGNCCGCGCAACGAGGNCCGCGGGCANCTTACNCTTNGNCGGCTTCTACAANTNCTTCGACGGCGNCGACTTTGACGGCANCGAANCTCGNC] consensusID : consensus_9921#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 310 fasta sequence [GGAGTCGACCCACGCGTCCGGCCGTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTGTCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTAGATTTCTTTTCATGTATCTCGAGACGTCGTGAGATCAATCTGGGTACCTTTTGCTGCCGATGTTTTTGAATCTCTATGCCTTGCCTGCATTGTTGGTTGCTTGGTTAGTGCTTTTGGCTCTTGATTGGTACCAATCTCTGCGAGGTTTTCTTAAATTCTCGTAGTACTTTGATTCACAAGATAGATTTTTGTTTATAAAAAA] [+] EMBL AU101299 [GGAGTCGACCCACGCGTCCGGCCGTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTGTCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTAGATTTCTTTTCATGTATCTCGAGACGTCGTGAGATCAATCTGGGTACCTTTTGCTGCCGATGTTTTTGAATCTCTATGCCTTGCCTGCATTGTTGGTTGCTTGGTTAGTGCTTTTGGCTCTTGATTGGTACCAATCTCTGCGAGGTTTTCTTAAATTCTCGTAGTACTTTGATTCACAAGATAGATTTTTGTTTATAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9921#1 ------------------------------------------------------------ consensus_9921#3 ------------------------------------------------------------ consensus_9921#0 CACCGCAGCGGGCGCGCCCCACCACCGGGCCCTCCTCCCCCTCTCCGCCCTCGCCACCCC 60 consensus_9921#2 ------------------------------------------------------------ consensus_9921#1 ------------------------------------------------------------ consensus_9921#3 ------------------------------------------------------------ consensus_9921#0 GCTCCTCCCCTTCCTTCCCCGCAGTGGTCCCGCAAAAACCCTAGCCATCCCGCCGCCTCC 120 consensus_9921#2 ------------------------------------------------------------ consensus_9921#1 -------------ACATGGACGACGACGCCATCACGGCGCTGATGGACATCGACGACTCC 47 consensus_9921#3 ------------------------------------------------------------ consensus_9921#0 GCCGCCGACGACGACATGGACGACGACGCCATCACGGCGCTGATGGACATCGACGACTCC 180 consensus_9921#2 ------------------------------------------------------------ consensus_9921#1 CCCCGCAGCAGCGGCGCCGGCGCCGTCTTCCTCGACGACGAGGAGGACGCGGAGGTCTTC 107 consensus_9921#3 ------------------------------------------------------------ consensus_9921#0 CCCCGCAGCAGCGGCGCCGGCGCCGTCTTCCTCGACGACGAGGAGGACGCGGAGGTCTTC 240 consensus_9921#2 ------------------------------------------------------------ consensus_9921#1 CCCGGCCACCGCGCGGCCCGCGCCAACGAGGCCCGCGGGCCCCTCCCCTTCGCCGGCTTC 167 consensus_9921#3 ------------------------------------------------------------ consensus_9921#0 CCCGGCCACCGCGCGGCCCGCGCCAACGAGGCCCGCGGGCCCCTCCCCTTCGCCGGCTTC 300 consensus_9921#2 ------------------------------------------------------------ consensus_9921#1 TACAACTCCTTCGACGGCGCCGACTTCGACGACACCGACCTCGCCTGAGGCGCTTACGGT 227 consensus_9921#3 ------------------------------------------------GGAGTCGAC--C 10 consensus_9921#0 TACAACTCCTTCGACGGCGCCGACTTCGACGACACCGACCTCGCCTGAGGCGCTTACGGT 360 consensus_9921#2 CAAGGCACCGCAGCGGGCGCGCCCCACCACCGGGCCCTCCTCCCCCTCTCCGCCCTCGCC 60 * * consensus_9921#1 AACGTGTGGGGGCCGGTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTG 287 consensus_9921#3 CACGCGTCCGGCC--GTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTG 68 consensus_9921#0 AACGTGTGGGGGCCGGTGCTCTTGTGGGGGGCTCTCCTGGAAGTTTGAGAGGCTGATCTG 420 consensus_9921#2 ACCCCGCTCCTCCCCTTCCTTCCCCGCAGTGGTCCCGCAAAAACCCTAGCCATCCCGCCG 120 * * * * ** * * * ** * ** ** * * consensus_9921#1 TCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTAGATTTCTTTTCATGT-ATCT 346 consensus_9921#3 TCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTAGATTTCTTTTCATGT-ATCT 127 consensus_9921#0 TCTCTATGGTGATGGATTCTTCTAGTTAGTTCGTCGGTTAGATTTCTTTTCATGT-ATCT 479 consensus_9921#2 CCTCCGNCGCCGACGACGACATGGACGACGACGNCATCACGGCGCTGATGGACATCGACG 180 *** * ** * ** * * * * * * consensus_9921#1 CGAGACGTCGTGAGATCAATCTGGGTACCTTTTGCT-GCCGATGTTTTTGAATCAAAAAA 405 consensus_9921#3 CGAGACGTCGTGAGATCAATCTGGGTACCTTTTGCT-GCCGATGTTTTTGAATCTCTATG 186 consensus_9921#0 CGAGACGTCGTGAGATCAATCTGGGTACCTTTTGCT-GCCGATGTTTTTGAATCTCTATG 538 consensus_9921#2 ACTCCCCCCGCAGCAGCGGCGNCGNCGCGTCTTCCTCGACGACGAGGA-GGACGNGNAGG 239 * ** * * * * * ** ** * *** * * * * consensus_9921#1 AAAA-------------------------------------------------------- 409 consensus_9921#3 CCTTGCCTGCATTGTTGGTTGCTTGGTTAGTGCTTTTGGCTCTTGATTGGTACCAATCTC 246 consensus_9921#0 CCTTGCCTGCATTGTTGGTTGCTTGGTTAGTGCTTTTGGCT------------------- 579 consensus_9921#2 TCTTNCCCGGNC-----ANCGCGCGGNCCGCGCAACGAGGNCC-GCGGGCANCTTACNCT 293 consensus_9921#1 ------------------------------------------------------------ consensus_9921#3 TGCGAGGTTTTCTTAAATTCTCGTAGTACTTTGA--TTCACAAGATAGATTTTTGTTTAT 304 consensus_9921#0 ------------------------------------------------------------ consensus_9921#2 TNGNCGGCTTCTACAANTNCTTCGACGGCGNCGACTTTGACGGCANCGAANCTCGNC--- 350 consensus_9921#1 ------ consensus_9921#3 AAAAAA 310 consensus_9921#0 ------ consensus_9921#2 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||