These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9926#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1222 fasta sequence [GCACATTCGACCATCTCACTAGCTAATCGCTGGTACTGGAAGCAGTAGTAGCAGCTTGCCAAAAATGGCGCCATTTCTTGTTGTGTTCGCCGTCATGGCCGCGGCTTTTGCGTCGGCCTCCGGCTCCGGCGAGCTCACCCCGGACTTCTACAGCGAGACGTGCCCGCAGGCGCTGACGACCATCAAGCTCGTCGTCGGCGCCGCCATCTTGAAGGAGCCGAGGATGGGCGCGTCCTTGGTCCGGATGCACTTCCATGACTGCTTCGTCAATGGTTGTGATGGCTCCGTTCTGCTGGACGACACCGACGACATGATCGGGGAGAAGCTGGCGAAGCCGAACAACATGTCATTGAGAGGGTTCGACGTGATCGACGCCATCAAGGTGGCGGTGAACACGGCCTGCTTGGGGAATGTTGTCTCCTGCGCTGATATCTTGGCAGTTGCTGCTCGTGATTCAATCGTCGCGCTCGGGGGAAGCTCGTACGAGGTGCTCCTGGGGCGGCGCGACGCGACGACGGCGAGCATCGACGACGCGAACGACGACATCCCGAACCCGTTCATGGACCTCCCGGACCTCGTCGACAACTTCGAGTCCCACGGCTTGTCGCTGCAGGACCTCGTCGTGCTCTCCGGCGGCCAC-ACGCTGGGCTACTCCCGCTGCCTCTTCTTCCGCAGCCGCCTCTACAACGAGACCGACACGCTGGACCCGGCCTACGCCGCGGCGCTCGAGGAGCAGTGCCCCATCGTCGGCGACGACGAGGCGCTCGCCTCGCTGGACGACACGCCGACCACCGTGGACACCGACTACTACCAGGGCCTCACGCAGGGCCGCGCGCTGCTGCACACGGACCAGCAGCTGTACCAGGGCGGCGGCGGCGGCGACAGCGACGAGCTGGTCAAGTACTACGGCGAGAACCCGGACAAGTTCTGGGAGGACTTCGGCGCCGCCATGGTGAAGATGGGCAACATCAGCCCGCTCACCGGCGACGACGGCGAGATCAGGGAGAACTGCCGGGTTGTTAACCAGTGAGTGATCGATCGATCCTGGTGTGGTCAAGCGACACACGACACGAGTCATCGCCACGAATTTGCATGGCACCTGTGGTAGCTGCTGATTTCTTGAAGGGTGTGCTTGCATGTACTTCTGATTTTGTGATGGCCTGCTCTTGTATTTGAATTGTTTTGAAAATTATGTTCCATTTCAACCAAAAATTTAATATCT] [+] EMBL AK060984 [ CACATTCGACCATCTCACTAGCTAATCGCTGGTACTGGAAGCAGTAGTAGCAGCTTGCCAAAAATGGCGCCATTTCTTGTTGTGTTCGCCGTCATGGCCGCGGCTTTTGCGTCGGCCTCCGGCTCCGGCGAGCTCACCCCGGACTTCTACAGCGAGACGTGCCCGCAGGCGCTGACGACCATCAAGCTCGTCGTCGGCGCCGCCATCTTGAAGGAGCCGAGGATGGGCGCGTCCTTGGTCCGGATGCACTTCCATGACTGCTTCGTCAATGGTTGTGATGGCTCCGTTCTGCTGGACGACACCGACGACATGATCGGGGAGAAGCTGGCGAAGCCGAACAACATGTCATTGAGAGGGTTCGACGTGATCGACGCCATCAAGGTGGCGGTGAACACGGCCTGCTTGGGGAATGTTGTCTCCTGCGCTGATATCTTGGCAGTTGCTGCTCGTGATTCAATCGTCGCGCTCGGGGGAAGCTCGTACGAGGTGCTCCTGGGGCGGCGCGACGCGACGACGGCGAGCATCGACGACGCGAACGACGACATCCCGAACCCGTTCATGGACCTCCCGGACCTCGTCGACAACTTCGAGTCCCACGGCTTGTCGCTGCAGGACCTCGTCGTGCTCTCCGGCGGCCAC ACGCTGGGCTACTCCCGCTGCCTCTTCTTCCGCAGCCGCCTCTACAACGAGACCGACACGCTGGACCCGGCCTACGCCGCGGCGCTCGAGGAGCAGTGCCCCATCGTCGGCGACGACGAGGCGCTCGCCTCGCTGGACGACACGCCGACCACCGTGGACACCGACTACTACCAGGGCCTCACGCAGGGCCGCGCGCTGCTGCACACGGACCAGCAGCTGTACCAGGGCGGCGGCGGCGGCGACAGCGACGAGCTGGTCAAGTACTACGGCGAGAACCCGGACAAGTTCTGGGAGGACTTCGGCGCCGCCATGGTGAAGATGGGCAACATCAGCCCGCTCACCGGCGACGACGGCGAGATCAGGGAGAACTGCCGGGTTGTTAACCAGTGAGTGATCGATCGATCCTGGTGTGGTCAAGCGACACACGACACGAGTCATCGCCACGAATTTGCATGGCACCTGTGGTAGCTGCTGATTTCTTGAAGGGTGTGCTTGCATGTACTTCTGATTTTGTGATGGCCTGCTCTTGTATTTGAATTGTTTTGAAAATTATGTTCCATTTCAACCAAAA ] [-] EMBL CB642575 [gcacgaggGACCATCTCACTAGCTAATCGCTGGTACTGGAAGCAGTAGTAGCAGCTTGCCAAAAATGGCGCCATTTCTTGTCGTGTTCGCCGTCATGGCCGCGGCTTTAGCGTCGGCCTCCGGCTCCGGCGAGCTCACCCCGGACTTGTACAGCGAGACGTGCCCGCAGGCGCTGACGACCATCAAGCTCGTCGTCGGCGCCGCCATCTTGAAGGAGCCGAGGATGGGCGCGTCCTTGGTCCGGATGCACTTCCATGACTGCTTCGTCAATGGTTGTGATGGCTCCGTTCTGCTGGACGACACCGACGACATGATCGGGGAGAAGCTGGCGAAGCCGACCAACATGTCATTGAGAGGGTTCGACGTGATCGACGCCATCAAGGTGGCGGTGAACACGGCCTGCTTGGGGAATGTTGTCTCCTGCGCTGATATCTTGGCAGTTGCTGCTCGTGATTCAATCGTCGCGCTCGGGGGAAGCTCGTACGAGGTGCTCCTGGGGCGGCGCGACGCGACGACGGCGAGCATCGACGACGCGAAGGACGACATCCCGAACCCGTTCATGGACCTCCCGGACCTGGTCGACAACTTAGAGTCCCACGCCTTGGCGCTGCAGGACCTCGTCGTGCTCTCCGGCGGCCACAACGCTGGGCTAC ] [+] EMBL CB650950 [ TGGTACTGGAAGCAGTAGTAGCAGCTTGCCAAAAATGGCGCCATTTCTTGTTGTGTTCGCCGTCATGGCCGCGGCTTTTGCGTCGGCCTCCGGCTCCGGCGAGCTCACCCCGGACTTCTACAGCGAGACGTGCCCGCAGGCGCTGACGACCATCAAGCTCGTCGTCGGCGCCGCCATCTTGAAGGAGCCGAGGATGGGCGCGTCCTTGGTCCGGATGCACTTCCATGACTGCTTCGTCAATGGTTGTGATGGCTCCGTTCTGCTGGACGACACCGACGACATGATCGGGGAGAAGCTGGCGAAGCCGAACAACATGTCATTGAGAGGGTTCGACGTGATCGACGCCATCAAGGTGGCGGTGAACACGGCCTGCTTGGGGAATGTTGTCTCCTGCGCTGATATCTTGGCAGTTGCTGCTCGTGATTCAATCGTCGCGCTCGGGGGAAGCTCGTACGAGGTGCTCCTGGGGCGGCGCGACGCGACGACGGCGAGCATCGACGACGCGAACGACGACATCCCGAACCCGTTCATGGACCTCCCGGACCTCGTCGACAACTTCGAGTCCCACGGCTTGTCGCTGCAGGACCTCGTCGTGCTCTCCGGCGGCCAC ACGCTGGGCTACTCCCGCTGCCTCTTCTTCCGCAGCCGCCTCTACAACGAGACCGACACGCTGGACCCGGCCTACGCCGCGGCGCTCGAGGAGCAGTGCCCCATCGTCGGCGACGACGAGGCGCTCGCCTCGCTGGACGACACGCCGACCACCGTGGACACCGACTACTACCAGGGCCTCACGCAGGGCCGCGCGC ] [+] EMBL CB642574 [ gtCTTGCCAAAAATGGCGCCATTTCTTGTTGTGTTCGCCGTCATGGCCGCGGCTTTTGCGTCGGCCTCCGGCTCCGGCGAGCTCACCCCGGACTTCTACAGCGAGACGTGCCCGCAGGCGCTGACGACCATCAAGCTCGTCGTCGGCGCCGCCATCTTGAAGGAGCCGAGGATGGGCGCGTCCTTGGTCCGGATGCACTTCCATGACTGCTTCGTCAATGGTTGTGATGGCTCCGTTCTGCTGGACGACACCGACGACATGATCGGGGAGAAGCTGGCGAAGCCGAACAACATGTCATTGAGAGGGTTCGACGTGATCGACGCCATCAAGGTGGCGGTGAACACGGCCTGCTTGGGGAATGTTGTCTCCTGCGCTGATATCTTGGCAGTTGCTGCTCGTGATTCAATCGTCGCGCTCGGGGGAAGCTCGTACGAGGTGCTCCTGGGGCGGCGCGACGCGACGACGGCGAGCATCGACGACGCGAACGACGACATCCCGAACCCGTTCATGGACCTCCCGGACCTCGTCGACAACTTCGAGTCCCACGGCTTGTCGCTGCAGGACCTCGTCGTGCTCTCCGGCGGCCAC ACGCTGGGCTACTCCCGCTGCCTCTTCTTCCGCAGCCGCCTCTACAACGAGACCGACACGCTGGACCCGGCCTA ] [-] EMBL CB650951 [ CTCGTGATTCAATCGTCGCGTTCGGGGGAAGCTCGTACGAGGTGCTCCTGGGGCGGCGCGACGCGACGACGGCGAGCATCGACGACGCGAACGACGACATCCCGAACCCGTTCATGGACCTCCCGGACCTCGTCGACAACTTCGAGTCCCACGGCTTGTCGCTGCAGGACCTCGTCGTGCTCTCCGGCGGCCAC ACGCTGGGCTACTCCCGCTGCCTCTTCTTCCGCAGCCGCCTCTACAACGAGACCGACACGCTGGACCCGGCCTACGCCGCGGCGCTCGAGGAGCAGTGCCCCATCGTCGGCGACGACGAGGCGCTCGCCTCGCTGGACGACACGCCGACCACCGTGGACACCGACTACTACCAGGGCCTCACGCAGGGCCGCGCGCTGCTGCACACGGACCAGCAGCTGTACCAGGGCGGCGGCGGCGGCGACAGCGACGAGCTGGTCAAGTACTACGGCGAGAACCCGGACAAGTTCTGGGAGGACTTCGGCGCCGCCATGGTGAAGATGGGCAACATCAGCCCGCTCACCGGCGACGACGGCGAGATCAGGGAGAACTGCCGGGTTGTTAACCAGTGAGTGATCGATCGATCCTGGTGTGGTCAAGCGACACACGACACGAGTCATCGCCACGAATTTGCATGGCACCTGTGGTAGCTGCTGATTTCTTGAAGGGGGTGCTTGCATGTACTTCTGATTTTGTGATGGCCTGCTCTTGTATTTGAATTGTTTTGAAAATTATGTTCCATGTCAACCAAAAATTTAATATCT] [-] EMBL CB662184 [ TCCCGCTGCTTTTTGTTCCGCAGCCGCCTCTACAACGAGACCGACACGCTGGACCCGGCCTACTCCGCGGCGCTCGAGGAGCAGTGCCCCATCGTCGGCGACGACGAGGCGCTCGCCTCGCTGGACGACACGCCGACCACCGTGGACACCGATTACTACCAGGGCCTCACGCAGGGCCGCGCGCTGCTGCACACGGACCAGCAGCTGTACCAGGGCGGCGGCGGCGGCGACAGCGACGAGCTGGTCAAGTACTACGGCGAGAACCCGGACAAGTTCTGGGAGGACTTCGGCGCCGCCATGGTGAAGATGGGCAACATCAGCCCGCTCACCGGCGACGACGGCGAGATCAGGGAGAACTGCCGGGTTGTTAACCAGTGAGTGATCGATCGATCCTGGTGTGGTCAAGCGACACACGACACGAGTCATCGCCACGAATTTGCATGGCACCTGTGGTAGCTGCTGATTTCTTGAAGGGTGTGCTTGCATGTACTTCTGATTTTGTGATGGCCTGCTCTTGTATTTGAATTGTTTTGAAAAGGATGTTCCATTTCAACCAAAAATTT ] consensusID : consensus_9926#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 656 fasta sequence [CAAAAACTTTACATTTCTTGTTGTGTTCGCCGTCATGGCCGCGGCTTTTGCGTCGGCCTCCGGCTCCGGCGAGCTCACCCCGGACTTCTACAGCGAGACGTGCCCGCAGGCGCTGACGACCATCAAGCTCGTCGTCGGCGCCGCCATCTTGAAGGAGCCGAGGATGGGCGCGTCCTTGGTCCGGATGCACTTCCATGACTGCTTCGTCAATGGTTGTGATGGCTCCGTTCTGCTGGACGACACCGACGACATGATCGGGGAGAAGCTGGCGAAGCCGAACAACATGTCATTGAGAGGGTTCGACGTGATCGACGCCATCAAGGTGGCGGTGAACACGGCCTGCTTGGGGAATGTTGTCTCCTGCGCTGATATCTTGGCAGTTGCTGCTCGTGATTCAATCGTCGCGCTCGGGGGAAGCTCGTACGAGGTGCTCCTGGGGCGGCGCGACGCGACGACGGCGAGCATCGACGACGCGAACGACGACATCCCGAACCCGTTCATGGACCTCCCGGACCTCGTCGACAACTTCGAGTCCCACGGCTTGTCGCTGCAGGACCTCGTCGTGCTCTCCGGCGGCCACACGCTGGGCTACTCCCGCTGCCTCTTCTTCCGCAGCCGCCTCTACAACGAGACCGACACGCTGGACCCGGCCTACG] [+] EMBL CB662183 [CAAAAACTTTACATTTCTTGTTGTGTTCGCCGTCATGGCCGCGGCTTTTGCGTCGGCCTCCGGCTCCGGCGAGCTCACCCCGGACTTCTACAGCGAGACGTGCCCGCAGGCGCTGACGACCATCAAGCTCGTCGTCGGCGCCGCCATCTTGAAGGAGCCGAGGATGGGCGCGTCCTTGGTCCGGATGCACTTCCATGACTGCTTCGTCAATGGTTGTGATGGCTCCGTTCTGCTGGACGACACCGACGACATGATCGGGGAGAAGCTGGCGAAGCCGAACAACATGTCATTGAGAGGGTTCGACGTGATCGACGCCATCAAGGTGGCGGTGAACACGGCCTGCTTGGGGAATGTTGTCTCCTGCGCTGATATCTTGGCAGTTGCTGCTCGTGATTCAATCGTCGCGCTCGGGGGAAGCTCGTACGAGGTGCTCCTGGGGCGGCGCGACGCGACGACGGCGAGCATCGACGACGCGAACGACGACATCCCGAACCCGTTCATGGACCTCCCGGACCTCGTCGACAACTTCGAGTCCCACGGCTTGTCGCTGCAGGACCTCGTCGTGCTCTCCGGCGGCCACACGCTGGGCTACTCCCGCTGCCTCTTCTTCCGCAGCCGCCTCTACAACGAGACCGACACGCTGGACCCGGCCTACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9926#0 GCACATTCGACCATCTCACTAGCTAATCGCTGGTACTGGAAGCAGTAGTAGCAGCTTGCC 60 consensus_9926#1 -----------------------------------------------------------C 1 * consensus_9926#0 AAAAATGGCGCCATTTCTTGTTGTGTTCGCCGTCATGGCCGCGGCTTTTGCGTCGGCCTC 120 consensus_9926#1 AAAAACTTTAC-ATTTCTTGTTGTGTTCGCCGTCATGGCCGCGGCTTTTGCGTCGGCCTC 60 ***** * ************************************************ consensus_9926#0 CGGCTCCGGCGAGCTCACCCCGGACTTCTACAGCGAGACGTGCCCGCAGGCGCTGACGAC 180 consensus_9926#1 CGGCTCCGGCGAGCTCACCCCGGACTTCTACAGCGAGACGTGCCCGCAGGCGCTGACGAC 120 ************************************************************ consensus_9926#0 CATCAAGCTCGTCGTCGGCGCCGCCATCTTGAAGGAGCCGAGGATGGGCGCGTCCTTGGT 240 consensus_9926#1 CATCAAGCTCGTCGTCGGCGCCGCCATCTTGAAGGAGCCGAGGATGGGCGCGTCCTTGGT 180 ************************************************************ consensus_9926#0 CCGGATGCACTTCCATGACTGCTTCGTCAATGGTTGTGATGGCTCCGTTCTGCTGGACGA 300 consensus_9926#1 CCGGATGCACTTCCATGACTGCTTCGTCAATGGTTGTGATGGCTCCGTTCTGCTGGACGA 240 ************************************************************ consensus_9926#0 CACCGACGACATGATCGGGGAGAAGCTGGCGAAGCCGAACAACATGTCATTGAGAGGGTT 360 consensus_9926#1 CACCGACGACATGATCGGGGAGAAGCTGGCGAAGCCGAACAACATGTCATTGAGAGGGTT 300 ************************************************************ consensus_9926#0 CGACGTGATCGACGCCATCAAGGTGGCGGTGAACACGGCCTGCTTGGGGAATGTTGTCTC 420 consensus_9926#1 CGACGTGATCGACGCCATCAAGGTGGCGGTGAACACGGCCTGCTTGGGGAATGTTGTCTC 360 ************************************************************ consensus_9926#0 CTGCGCTGATATCTTGGCAGTTGCTGCTCGTGATTCAATCGTCGCGCTCGGGGGAAGCTC 480 consensus_9926#1 CTGCGCTGATATCTTGGCAGTTGCTGCTCGTGATTCAATCGTCGCGCTCGGGGGAAGCTC 420 ************************************************************ consensus_9926#0 GTACGAGGTGCTCCTGGGGCGGCGCGACGCGACGACGGCGAGCATCGACGACGCGAACGA 540 consensus_9926#1 GTACGAGGTGCTCCTGGGGCGGCGCGACGCGACGACGGCGAGCATCGACGACGCGAACGA 480 ************************************************************ consensus_9926#0 CGACATCCCGAACCCGTTCATGGACCTCCCGGACCTCGTCGACAACTTCGAGTCCCACGG 600 consensus_9926#1 CGACATCCCGAACCCGTTCATGGACCTCCCGGACCTCGTCGACAACTTCGAGTCCCACGG 540 ************************************************************ consensus_9926#0 CTTGTCGCTGCAGGACCTCGTCGTGCTCTCCGGCGGCCACACGCTGGGCTACTCCCGCTG 660 consensus_9926#1 CTTGTCGCTGCAGGACCTCGTCGTGCTCTCCGGCGGCCACACGCTGGGCTACTCCCGCTG 600 ************************************************************ consensus_9926#0 CCTCTTCTTCCGCAGCCGCCTCTACAACGAGACCGACACGCTGGACCCGGCCTACGCCGC 720 consensus_9926#1 CCTCTTCTTCCGCAGCCGCCTCTACAACGAGACCGACACGCTGGACCCGGCCTACG---- 656 ******************************************************** consensus_9926#0 GGCGCTCGAGGAGCAGTGCCCCATCGTCGGCGACGACGAGGCGCTCGCCTCGCTGGACGA 780 consensus_9926#1 ------------------------------------------------------------ consensus_9926#0 CACGCCGACCACCGTGGACACCGACTACTACCAGGGCCTCACGCAGGGCCGCGCGCTGCT 840 consensus_9926#1 ------------------------------------------------------------ consensus_9926#0 GCACACGGACCAGCAGCTGTACCAGGGCGGCGGCGGCGGCGACAGCGACGAGCTGGTCAA 900 consensus_9926#1 ------------------------------------------------------------ consensus_9926#0 GTACTACGGCGAGAACCCGGACAAGTTCTGGGAGGACTTCGGCGCCGCCATGGTGAAGAT 960 consensus_9926#1 ------------------------------------------------------------ consensus_9926#0 GGGCAACATCAGCCCGCTCACCGGCGACGACGGCGAGATCAGGGAGAACTGCCGGGTTGT 1020 consensus_9926#1 ------------------------------------------------------------ consensus_9926#0 TAACCAGTGAGTGATCGATCGATCCTGGTGTGGTCAAGCGACACACGACACGAGTCATCG 1080 consensus_9926#1 ------------------------------------------------------------ consensus_9926#0 CCACGAATTTGCATGGCACCTGTGGTAGCTGCTGATTTCTTGAAGGGTGTGCTTGCATGT 1140 consensus_9926#1 ------------------------------------------------------------ consensus_9926#0 ACTTCTGATTTTGTGATGGCCTGCTCTTGTATTTGAATTGTTTTGAAAATTATGTTCCAT 1200 consensus_9926#1 ------------------------------------------------------------ consensus_9926#0 TTCAACCAAAAATTTAATATCT 1222 consensus_9926#1 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||