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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_993#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1697 fasta sequence
[ATCCCACCCATCCTCGTCTTCTTCCAGGCCCCGCTTCCGCCACCTCCTCCGTTCCCGCCGGCTCGCCGCCGCCGCCTCTCCCAGCCGCTTCCCCTCGCCGCCGCAGCCTCCTATCCTCCCTAGTCCATCACCGCGCCTCCTTCTCCACCTCCTCCTCCAGTTGCGGGGGCTTGCGGCCCGCCTCGTCATCCCCGCGCGCAGCCACTCCCCCCTTCTCCGCCATTCTATGGCGACGAACATGGTTCTCCTTCCTTGCCACGCCCTTCGGATAACACCTTCCGGAGCATCCGCATTTGCGTCGTCGCCATTATCTGCTCGTCCAAGACCAATATTTGCTTCTTCCCTCGGCGGCCGCTGCTCCGCTTGTCGGACTCCGCCGCCCGCCGCCGCCGCCGCTTGCAGGGTTGCTGCTGCTTCTTGGGCCGGTGACCTCGGAAGAGCGGTGCCATGGAAGGCCGCGGTCTCCAGCGCGCTTGCCGTCGCCTTGTCCTTCACTTGCTAATCTCGCACATGCAGTTGTTGGTATAGTTAATGCAAAGACTGGGGTCAACAAACCCGAATTGCTTCCCAAGGAATTCACCACCGTCATTGATGTTGCTGGTTTTCTCTCCCCAGGAAAACCGTCTGCGTCAAGAAATAGAAGATCTTGAGAAAGATACAGGATACAAGTTGAGAGTTCTTGCACAAAATTATCCTGATACACCAGGGTTGGCTATCAAAGATTTTTGGCAAGTTGATGACCAGACAATCGTGTTTGTCGCCGATCCCACCTTCGGAAACATTATAAATTTCAATGTTGGTGCATTAGTTGATTTAGACATTCCTCGGAGCTTTTGGAGTCGTGTTTCAGGGAAGTACGGAAACATGTTCTTCTGGAAAGAAAAGGTAACATTTTGTTATTCAATCTAGCAGTTAACAATAAATTACATATTCATAGTGATGTTTTTTTTTTGTCCTCCTGATTCTACAATTAGAAGAGCACTAAAATATGATCATTAGCAATGGAAACAGCACAAACTTTTAAAACCATCCAATAGAAACTATCCTGCAGTTACCTTTCAAATAACAAAATTCCTCCGACTGATCAGGTTCTCTCTTTTTGTGCTTCAGATTTTCCTTCCTTGTCTAAGCTGGTTTCAATGTCTGAATATTTTGAACAACAATGTAAATTGTTAGCAAAAATATAGTAAGCTCAAGTTTTTTTTGGACAAAATTTTATGTTTTGCCCTGTGAAATTGTGGATAACCATGCCAGTCCCTGCTTGGAAACTCTCTTCTAGTTTCTATATATGTTGTCCACACCATTGCCTTCTTGAAACATGGAACAGGGGGAGGATGCATCAATTGAAGCTGCTGTGATGGCCGTATCACGCTGTCTGAGAGAGCCCACTGGGGCAAATAACTGCTCTGAGGTTCTGTAGATGTGAAGACAAGCAAGTGCAACATATGTATAGAAGCGAAAAAAAAAGTCCAAGAGCTATACTAAATAGTACGAGGCCAAGGACCATTCAGGTTTCTTTTTTCAGTTGTACACATAAACTCATCATTTTGACTAATTCTGATTTTTTAGCAAGGATGAAGTCTCTCTTGTTAATAGATGCGAACTACTTTGAGATTTAGGGCCTGTTCACTTTGATGCCAAAAAAAAAAACCTATGTTGCTAAAATTTTGGCAAGATAATTATTTTGAATGTGTTCA]
[+] EMBL AK063551 [ATCCCACCCATCCTCGTCTTCTTCCAGGCCCCGCTTCCGCCACCTCCTCCGTTCCCGCCGGCTCGCCGCCGCCGCCTCTCCCAGCCGCTTCCCCTCGCCGCCGCAGCCTCCTATCCTCCCTAGTCCATCACCGCGCCTCCTTCTCCACCTCCTCCTCCAGTTGCGGGGGCTTGCGGCCCGCCTCGTCATCCCCGCGCGCAGCCACTCCCCCCTTCTCCGCCATTCTATGGCGACGAACATGGTTCTCCTTCCTTGCCACGCCCTTCGGATAACACCTTCCGGAGCATCCGCATTTGCGTCGTCGCCATTATCTGCTCGTCCAAGACCAATATTTGCTTCTTCCCTCGGCGGCCGCTGCTCCGCTTGTCGGACTCCGCCGCCCGCCGCCGCCGCCGCTTGCAGGGTTGCTGCTGCTTCTTGGGCCGGTGACCTCGGAAGAGCGGTGCCATGGAAGGCCGCGGTCTCCAGCGCGCTTGCCGTCGCCTTGTCCTTCACTTGCTAATCTCGCACATGCAGTTGTTGGTATAGTTAATGCAAAGACTGGGGTCAACAAACCCGAATTGCTTCCCAAGGAATTCACCACCGTCATTGATGTTGCTGGTTTTCTCTCCCCAGGAAAACCGTCTGCGTCAAGAAATAGAAGATCTTGAGAAAGATACAGGATACAAGTTGAGAGTTCTTGCACAAAATTATCCTGATACACCAGGGTTGGCTATCAAAGATTTTTGGCAAGTTGATGACCAGACAATCGTGTTTGTCGCCGATCCCACCTTCGGAAACATTATAAATTTCAATGTTGGTGCATTAGTTGATTTAGACATTCCTCGGAGCTTTTGGAGTCGTGTTTCAGGGAAGTACGGAAACATGTTCTTCTGGAAAGAAAAGGTAACATTTTGTTATTCAATCTAGCAGTTAACAATAAATTACATATTCATAGTGATGTTTTTTTTTTGTCCTCCTGATTCTACAATTAGAAGAGCACTAAAATATGATCATTAGCAATGGAAACAGCACAAACTTTTAAAACCATCCAATAGAAACTATCCTGCAGTTACCTTTCAAATAACAAAATTCCTCCGACTGATCAGGTTCTCTCTTTTTGTGCTTCAGATTTTCCTTCCTTGTCTAAGCTGGTTTCAATGTCTGAATATTTTGAACAACAATGTAAATTGTTAGCAAAAATATAGTAAGCTCAAGTTTTTTTTGGACAAAATTTTATGTTTTGCCCTGTGAAATTGTGGATAACCATGCCAGTCCCTGCTTGGAAACTCTCTTCTAGTTTCTATATATGTTGTCCACACCATTGCCTTCTTGAAACATGGAACAGGGGGAGGATGCATCAATTGAAGCTGCTGTGATGGCCGTATCACGCTGTCTGAGAGAGCCCACTGGGGCAAATAACTGCTCTGAGGTTCTGTAGATGTGAAGACAAGCAAGTGCAACATATGTATAGAAGCGAAAAAAAAAGTCCAAGAGCTATACTAAATAGTACGAGGCCAAGGACCATTCAGGTTTCTTTTTTCAGTTGTACACATAAACTCATCATTTTGACTAATTCTGATTTTTTAGCAAGGATGAAGTCTCTCTTGTTAATAGATGCGAACTACTTTGAGATTTAGGGCCTGTTCACTTTGATGCCAAAAAAAAAAACCTATGTTGCTAAAATTTTGGCAAGATAATTATTTTGAATGTGTTCA]
consensusID : consensus_993#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence
[TGCACAAAATAACCCTGAACCCCCAGGTTGGCTATCAAAGATTTTTGGNAAGTTGATGACCAGACAANCCTTGNTTGCCGCCGATCCCACCTTCGGAAACATTATAAATTTCAATGTTGGTGCATTAGTTGATTTAGACATTCCTCGGAGCTTTTGGAGTCGTGTTTCAGGGAAGTACGGAAACATGTTCTTCTGGAAAGAAAAGGGGGAGGATGCATCAATTGAAGCTGCTGTGATGGCCGTATCACGCTGTCTGAGAGAGCCCACTGGGGCAAATAACTGCTCTGAGGTTCTGTAGATGTGAANACAAGCAAGTGCAACATATGTATAGAAGCGAAAAAAAAAGTCCAAGAGCTATACTAAATAGTACGAGGCCAAGGACCATTCAGGTTTCTTTTTTCAGTTGTACACATAAACTCATCATTTTGACTAATTCTGATTTTTTAG]
[-] EMBL OSS16302A [TGCACAAAATAACCCTGAACCCCCAGGTTGGCTATCAAAGATTTTTGGNAAGTTGATGACCAGACAANCCTTGNTTGCCGCCGATCCCACCTTCGGAAACATTATAAATTTCAATGTTGGTGCATTAGTTGATTTAGACATTCCTCGGAGCTTTTGGAGTCGTGTTTCAGGGAAGTACGGAAACATGTTCTTCTGGAAAGAAAAGGGGGAGGATGCATCAATTGAAGCTGCTGTGATGGCCGTATCACGCTGTCTGAGAGAGCCCACTGGGGCAAATAACTGCTCTGAGGTTCTGTAGATGTGAANACAAGCAAGTGCAACATATGTATAGAAGCGAAAAAAAAAGTCCAAGAGCTATACTAAATAGTACGAGGCCAAGGACCATTCAGGTTTCTTTTTTCAGTTGTACACATAAACTCATCATTTTGACTAATTCTGATTTTTTAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_993#0 ATCCCACCCATCCTCGTCTTCTTCCAGGCCCCGCTTCCGCCACCTCCTCCGTTCCCGCCG 60
consensus_993#1 ------------------------------------------------------------
consensus_993#0 GCTCGCCGCCGCCGCCTCTCCCAGCCGCTTCCCCTCGCCGCCGCAGCCTCCTATCCTCCC 120
consensus_993#1 ------------------------------------------------------------
consensus_993#0 TAGTCCATCACCGCGCCTCCTTCTCCACCTCCTCCTCCAGTTGCGGGGGCTTGCGGCCCG 180
consensus_993#1 ------------------------------------------------------------
consensus_993#0 CCTCGTCATCCCCGCGCGCAGCCACTCCCCCCTTCTCCGCCATTCTATGGCGACGAACAT 240
consensus_993#1 ------------------------------------------------------------
consensus_993#0 GGTTCTCCTTCCTTGCCACGCCCTTCGGATAACACCTTCCGGAGCATCCGCATTTGCGTC 300
consensus_993#1 ------------------------------------------------------------
consensus_993#0 GTCGCCATTATCTGCTCGTCCAAGACCAATATTTGCTTCTTCCCTCGGCGGCCGCTGCTC 360
consensus_993#1 ------------------------------------------------------------
consensus_993#0 CGCTTGTCGGACTCCGCCGCCCGCCGCCGCCGCCGCTTGCAGGGTTGCTGCTGCTTCTTG 420
consensus_993#1 ------------------------------------------------------------
consensus_993#0 GGCCGGTGACCTCGGAAGAGCGGTGCCATGGAAGGCCGCGGTCTCCAGCGCGCTTGCCGT 480
consensus_993#1 ------------------------------------------------------------
consensus_993#0 CGCCTTGTCCTTCACTTGCTAATCTCGCACATGCAGTTGTTGGTATAGTTAATGCAAAGA 540
consensus_993#1 ------------------------------------------------------------
consensus_993#0 CTGGGGTCAACAAACCCGAATTGCTTCCCAAGGAATTCACCACCGTCATTGATGTTGCTG 600
consensus_993#1 ------------------------------------------------------------
consensus_993#0 GTTTTCTCTCCCCAGGAAAACCGTCTGCGTCAAGAAATAGAAGATCTTGAGAAAGATACA 660
consensus_993#1 ------------------------------------------------------------
consensus_993#0 GGATACAAGTTGAGAGTTCTTGCACAAAATTATCCTGATACACCAGGGTTGGCTATCAAA 720
consensus_993#1 ------------------------------------------------------------
consensus_993#0 GATTTTTGGCAAGTTGATGACCAGACAATCGTGTTTGTCGCCGATCCCACCTTCGGAAAC 780
consensus_993#1 ------------------------------------------------------------
consensus_993#0 ATTATAAATTTCAATGTTGGTGCATTAGTTGATTTAGACATTCCTCGGAGCTTTTGGAGT 840
consensus_993#1 ------------------------------------------------------------
consensus_993#0 CGTGTTTCAGGGAAGTACGGAAACATGTTCTTCTGGAAAGAAAAGGTAACATTTTGTTAT 900
consensus_993#1 ------------------------------------------------------------
consensus_993#0 TCAATCTAGCAGTTAACAATAAATTACATATTCATAGTGATGTTTTTTTTTTGTCCTCCT 960
consensus_993#1 ------------------------------------------------------------
consensus_993#0 GATTCTACAATTAGAAGAGCACTAAAATATGATCATTAGCAATGGAAACAGCACAAACTT 1020
consensus_993#1 ------------------------------------------------------------
consensus_993#0 TTAAAACCATCCAATAGAAACTATCCTGCAGTTACCTTTCAAATAACAAAATTCCTCCGA 1080
consensus_993#1 ------------------------------------------------------------
consensus_993#0 CTGATCAGGTTCTCTCTTTTTGTGCTTCAGATTTTCCTTCCTTGTCTAAGCTGGTTTCAA 1140
consensus_993#1 ----------------------TGCA-CAAAATAACCCTGAACCCCCAGGTTGGCTATCA 37
*** ** * * ** * * * * *** * *
consensus_993#0 TGTCTGAATATTTTGAACAACAATGTAAATTGTTAGCAAAAATATAGTAAGCTCAAGTTT 1200
consensus_993#1 ------AAGATTTTTGGNAA----GTTGATGACCAGACAANCCTTGNTTGCCGCCGATCC 87
** ***** ** ** ** ** ** * * * * *
consensus_993#0 T-TTTTGGACAAAATTTTATGTTTTGCCCTGTGAAATTGTGGATAACCATGCCAGTCCCT 1259
consensus_993#1 CACCTTCGGAAACATTATAAATTTCAATGT-TGGTGCATTAGTTGATT----TAGACATT 142
** * ** *** ** *** * ** * * * * ** * *
consensus_993#0 GCTTGGAAACTCTCTTCTAGTTTCTATATATGTTGTCCACACCATTGCCTTCTTGAAACA 1319
consensus_993#1 CCTCGGAGCTTTTGGAGTCGTGTTTCAGGGAAGTACGGAAAC-ATGTTCTTCTGGAAA-- 199
** *** * * * ** * * * * ** ** ***** ****
consensus_993#0 TGGAACAGGGGGAGGATGCATCAATTGAAGCTGCTGTGATGGCCGTATCACGCTGTCTGA 1379
consensus_993#1 --GAAAAGGGGGAGGATGCATCAATTGAAGCTGCTGTGATGGCCGTATCACGCTGTCTGA 257
*** ******************************************************
consensus_993#0 GAGAGCCCACTGGGGCAAATAACTGCTCTGAGGTTCTGTAGATGTGAAGACAAGCAAGTG 1439
consensus_993#1 GAGAGCCCACTGGGGCAAATAACTGCTCTGAGGTTCTGTAGATGTGAANACAAGCAAGTG 317
************************************************ ***********
consensus_993#0 CAACATATGTATAGAAGCGAAAAAAAAAGTCCAAGAGCTATACTAAATAGTACGAGGCCA 1499
consensus_993#1 CAACATATGTATAGAAGCGAAAAAAAAAGTCCAAGAGCTATACTAAATAGTACGAGGCCA 377
************************************************************
consensus_993#0 AGGACCATTCAGGTTTCTTTTTTCAGTTGTACACATAAACTCATCATTTTGACTAATTCT 1559
consensus_993#1 AGGACCATTCAGGTTTCTTTTTTCAGTTGTACACATAAACTCATCATTTTGACTAATTCT 437
************************************************************
consensus_993#0 GATTTTTTAGCAAGGATGAAGTCTCTCTTGTTAATAGATGCGAACTACTTTGAGATTTAG 1619
consensus_993#1 GATTTTTTAG-------------------------------------------------- 447
**********
consensus_993#0 GGCCTGTTCACTTTGATGCCAAAAAAAAAAACCTATGTTGCTAAAATTTTGGCAAGATAA 1679
consensus_993#1 ------------------------------------------------------------
consensus_993#0 TTATTTTGAATGTGTTCA 1697
consensus_993#1 ------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||