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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9933#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 821 fasta sequence
[GTTTTTTTTTGAGCCAGCTCAGGATGTTCGAAATTCATCGAGAATGTGAACTCTGAACAGAAGAATCCCCACAAACGTGCAGTCATTTTCAATGACAACGGGGTTTTTACAATCTGGAATGATAGGTTATATTGAGCAGAACATAAATATTGAGTTGCTCAGGTGTTGTACAGATCTACCCTACTCAACCTATAATACATGCTCAAAATCTTTCTTGCTGAGACGAATTTGCTAGTCAATCGAAAATTGAGCTGTAATTTGTAGATTATAACGCAGAGATATTAACAAGCTGCAACCAGTTGTATCTGTATGTACCACTAAGCTCCAAATATGACTGAAACAACCCTAATATGCGATGCGGCTCCACCAAGTCAAGTTTTCATTCTGGCTTAGACGCAAGCAGCTTCAAGCCTGCCCCTTCTATACAGTGCATACCCTTCTCCATGTAGTTGCTTCGATCAAAGTTGGTCACCGCATTTTTGCCACGGATCTCAATAG-CAGCAATGTCGTAAGCCTCCGCTGCTTCTT-CCTCAGTTTTGAAAGTTCCCAGGTAAATGTCTCTTGTTCCAGCAACCAGTCCTATGCGTGCCTGCCACCTCCCATCTTTCTGCCTTCTAGTAACTCCTCTATAAATAGAAGCCCCTCTTGAGAAGCAGCTACTTCTTCTTCTTAGGTATGTTACGCATTCCTCTCGAGACATGTCCCTTATGTCCTCCAGTTCCCTTTCGTATTCTGAAACCGAGAAATTCAGCTTTGTATTTTGGCCCCAGTATTTAAGAGCTGCAACATCATATGACCTGGCAGCTTTTTCCTCGGTATCA]
[+] EMBL CF303426 [GTTTTTTTTTGAGCCAGCTCAGGATGTTCGAAATTCATCGAGAATGTGAACTCTGAACAGAAGAATCCCCACAAACGTGCAGTCATTTTCAATGACAACGGGGAACATACAATCTGGAATGATAGGTTATATTGAGCAGAACATAAATATTGAGTTGCTCAGGTGTTGTACAGATCTACCCTACTCAACCTATAATACATGCTCAAAATCTTTCTTGCTGAGACGAATTTGCTAGTCAATCGAAAATTGAGCTGTAATTTGTAGATTATAACGCAGAGATATTAACAAGCTGCAACCAGTTGTATCTGTATGTACCACTAAGCTCCAAATATGACTGAAACAACCCTAATATGCGATGCGGCTCCACCAAGTCAAGTTTTCATTCTGGCTTAGACGCAAGCAGCTTCAAGCCTGCCCCTTCTATACAGTGCATACCCTTCTCCATGTAGTTGCTTCGATCAAAGTTGGTCACCGCATTTTTGCCACGGATCTCAATAG CAGCAATGTCGTAAGCCTCCGCTGCTTCTT CCTCAGTTTTGAAAGTTCCCAGG ]
[+] EMBL CF293914 [ TTTTT ATCTGGAATGATAGGTTTTATTGAGCAGAACATAAATATTGAGTTGCTCAGGTGTTGTACAGATCTACCCTACTCAACCTATAATACATGCTCAAAATCTTTCTTGCTGAGACGAATTTGCTAGTCAATCGAAAATTGAGCTGTAATTTGTAGATTATAACGCAGAGATATTAACAAGCTGCAACCAGTTGTATCTGTATGTACCACTAAGCTCCAAATATGACTGAAACAACCCTAATATGCGATGCGGCTCCACCAAGTCAAGTTTTCATTCTGGCTTAGACGCAAGCAGCTTCAAGCCTGCCCCTTCTATACAGTGCATACCCTTCTCCATGTAGTTGCTTCGATCAAAGTTGGTCACCGCATTTTTGCCACGGATCTCAATAG CAGCAAT ]
[-] EMBL CA765402 [ TTTTNACAATCTGGAATGATAGGTTATATTGAGCAGAACATAAATATTGAGTTGCTCAGGTGTTGTACAGATCTACCCTACTCAACCTATAATACATGCTCAAAATCTTTCTTGCTGAGACGAATTTGCTAGTCAATCGAAAATTGAGCTGTAATTTGTAGATTATAACGCAGAGATATTAACAAGCTGCAACCAGTTGTATCTGTATGTACCACTAAGCTCCAAATATGACTGAAACAACCCTAATATGCGATGCGGCTCCACCAAGTCAAGTTTTCATTCTGGCTTAGACGCAAGCAGCTTCAAGCCTGCCCCTTCTATACAGTGCATACCCTTCTCCATGTAGTTGCTTCGAT ]
[+] EMBL CF276984 [ tTTTTTAC ATCTGGAATGATAGGTTATATTGAGCAGAACATAAATATTGAGTTGCTCAGGTGTTGTACAGATCTACCCTACTCAACCTATAATACATGCTCAAAATCTTTCTTGCTGAGACGAATTTGCTAGTCAATCGAAAATTGAGCTGTAATTTGTAGATTATAACGCAGAGATATTAACAAGCTGCAACCAGTTGTATCTGTATGTACCACTA ]
[-] EMBL BI797344 [ ttttttTGGAATGATAGGTTATATTGAGCAGAACATAAATATTGAGTTGCTCAGGTGTTGTACAGATCTACCCTACTCAACCTATAATACATGCTCAAAATCTTTCTTGCTGAGACGAATTTGCTAGTCAATCGAAAATTGAGCTGTAATTTGTAGATTATAACGCAGAGATATT ACAAGCTGCAACCAGTTGTATCTGTATGTACCACTAAGCTCCAAATATGACTGAAACAACCCTAATATGCGATGCGG TCCACCAAGTCAAGTTTTCATTCTGGCTTAGACGCAAGCAGCTTCAAGCCTGCCCCTTCTATACAGTGCATACCCTTCTCCATGTAGTTGCTTCGATCAAAGTTGGTCACCG ATTTTTGCCACGGATCTCAATAG CAGCAATGTCGTAAGCCTCCGCTGCTTCTT CCTCAGTTTTGAAAGTTCCCAGGTAAATGTCTCTTGTTCCAGCAACCAGTCCTATGCGTGCCTGCCACCTCCCATCTTTCTGCCTTCTAGTAACTCCTCTATAAAT ]
[-] EMBL AU078642 [ tcCAATAGCCAGCAATGTCGTAAGCCTCCGCTGCNTCTTCCCTCAGTTTTGAAAGTTCCCAGGTAAATGTCTCTTGTTCCAGCAACCAGTCCTATGCGTGCCTGCCACCTCCCATCTTTCTGCCTTCTAGTAACTCCTCTATAAATAGAAGCCCCTCTTGAGAAGCAGCTACTTCTTCTTCTTAGGTATGTTACGCATTCCTCTCGAGACATGTCCCTTATGTCCTCCAGTTCCCTTTCGTATTCTGAAACCGAGAAATTCAGCTTTGTATTTTGGCCCCAGTATTTAAGAGCTGCAACATCATATGACCTGGCAGCTTTTTCCTCGGTATCA]
consensusID : consensus_9933#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 419 fasta sequence
[TTTTTTTTNTTTTTTACAATCTGGAATGATAGGTTATATTGAGCAGAACATAAATATTGAGTTGCTCAGGTGTTGTACAGATCTACCCTACTCAACCTATAATACATGCTCAAAATCTTTCTTGCTGAGACGAATTTGCTAGTCAATCGAAAATTGAGCTGTAATTTGTAGATTATAACGCAGAGATATTAACAAGCTGCAACCAGTTGTATCTGNATGTACCACTAAGCTCCAAATATGACTGAAACAACCCTAATATGCGATGCGGCTCCACCAAGTCAAGNTTTCATTCTGGGCTTAGACGCAAGCAGCTTCAAGCCTGCCCCTTCTATACAGTGCATACCCTTCTCCANGTAGGTTGCTTCGATCAAAGTTGGTCACCGNATTTTTGCCACGGATNTCAATAGCAGCAATGGTCG]
[-] EMBL AU078643 [TTTTTTTTNTTTTTTACAATCTGGAATGATAGGTTATATTGAGCAGAACATAAATATTGAGTTGCTCAGGTGTTGTACAGATCTACCCTACTCAACCTATAATACATGCTCAAAATCTTTCTTGCTGAGACGAATTTGCTAGTCAATCGAAAATTGAGCTGTAATTTGTAGATTATAACGCAGAGATATTAACAAGCTGCAACCAGTTGTATCTGNATGTACCACTAAGCTCCAAATATGACTGAAACAACCCTAATATGCGATGCGGCTCCACCAAGTCAAGNTTTCATTCTGGGCTTAGACGCAAGCAGCTTCAAGCCTGCCCCTTCTATACAGTGCATACCCTTCTCCANGTAGGTTGCTTCGATCAAAGTTGGTCACCGNATTTTTGCCACGGATNTCAATAGCAGCAATGGTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9933#0 GTTTTTTTTTGAGCCAGCTCAGGATGTTCGAAATTCATCGAGAATGTGAACTCTGAACAG 60
consensus_9933#1 ------------------------------------------------------------
consensus_9933#0 AAGAATCCCCACAAACGTGCAGTCATTTTCAATGACAACGGGGTTTTTACAATCTGGAAT 120
consensus_9933#1 -------------------------TTTTTTTTN--------TTTTTTACAATCTGGAAT 27
**** * *****************
consensus_9933#0 GATAGGTTATATTGAGCAGAACATAAATATTGAGTTGCTCAGGTGTTGTACAGATCTACC 180
consensus_9933#1 GATAGGTTATATTGAGCAGAACATAAATATTGAGTTGCTCAGGTGTTGTACAGATCTACC 87
************************************************************
consensus_9933#0 CTACTCAACCTATAATACATGCTCAAAATCTTTCTTGCTGAGACGAATTTGCTAGTCAAT 240
consensus_9933#1 CTACTCAACCTATAATACATGCTCAAAATCTTTCTTGCTGAGACGAATTTGCTAGTCAAT 147
************************************************************
consensus_9933#0 CGAAAATTGAGCTGTAATTTGTAGATTATAACGCAGAGATATTAACAAGCTGCAACCAGT 300
consensus_9933#1 CGAAAATTGAGCTGTAATTTGTAGATTATAACGCAGAGATATTAACAAGCTGCAACCAGT 207
************************************************************
consensus_9933#0 TGTATCTGTATGTACCACTAAGCTCCAAATATGACTGAAACAACCCTAATATGCGATGCG 360
consensus_9933#1 TGTATCTGNATGTACCACTAAGCTCCAAATATGACTGAAACAACCCTAATATGCGATGCG 267
******** ***************************************************
consensus_9933#0 GCTCCACCAAGTCAAGTTTTCATTCTGG-CTTAGACGCAAGCAGCTTCAAGCCTGCCCCT 419
consensus_9933#1 GCTCCACCAAGTCAAGNTTTCATTCTGGGCTTAGACGCAAGCAGCTTCAAGCCTGCCCCT 327
**************** *********** *******************************
consensus_9933#0 TCTATACAGTGCATACCCTTCTCCATGTAG-TTGCTTCGATCAAAGTTGGTCACCGCATT 478
consensus_9933#1 TCTATACAGTGCATACCCTTCTCCANGTAGGTTGCTTCGATCAAAGTTGGTCACCGNATT 387
************************* **** ************************* ***
consensus_9933#0 TTTGCCACGGATCTCAATAGCAGCAATG-TCGTAAGCCTCCGCTGCTTCTTCCTCAGTTT 537
consensus_9933#1 TTTGCCACGGATNTCAATAGCAGCAATGGTCG---------------------------- 419
************ *************** ***
consensus_9933#0 TGAAAGTTCCCAGGTAAATGTCTCTTGTTCCAGCAACCAGTCCTATGCGTGCCTGCCACC 597
consensus_9933#1 ------------------------------------------------------------
consensus_9933#0 TCCCATCTTTCTGCCTTCTAGTAACTCCTCTATAAATAGAAGCCCCTCTTGAGAAGCAGC 657
consensus_9933#1 ------------------------------------------------------------
consensus_9933#0 TACTTCTTCTTCTTAGGTATGTTACGCATTCCTCTCGAGACATGTCCCTTATGTCCTCCA 717
consensus_9933#1 ------------------------------------------------------------
consensus_9933#0 GTTCCCTTTCGTATTCTGAAACCGAGAAATTCAGCTTTGTATTTTGGCCCCAGTATTTAA 777
consensus_9933#1 ------------------------------------------------------------
consensus_9933#0 GAGCTGCAACATCATATGACCTGGCAGCTTTTTCCTCGGTATCA 821
consensus_9933#1 --------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||