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Oryza sativa
cluster # 9935 cluster # 9935       Sequences # 7       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9935#0 length = 1928 sequences # 7  

consensusID : consensus_9935#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1928
fasta sequence
                              [TACTTGGATACCGTCCGGTCGCGTGCTG-GTTCTGCTCCTTCGCTGTTTAGACGCGTAATCCGCATGAACAATCCTGTCTCGATTTCATACTGATGATATTTGATCTGCTGCGCGGCTGCTCGTTACGTTGGGTGTTATTTGATAGTATTTCCTTGTGTTCTTGAGCTTGGTAAGTAAAGTGGTGCCGTGTCGGGTGTGAGGTTTTGGCATGCCCGCGGGGGCGAGGTCATGGCTCGCCGACCTGCGCGCGCGGTTCGGTGGCGGCGCCAGGGAGGAGGCGGGTCTCGGGATCCTGGCGTTCGAGGCGGCGGCGGCCATGTCGCGGC-TCGTGTCGCTCCACCGCTCGCTGTCTGACGTGGAGGTCAGGAGGCTCCGCGCGGACGCGCTGCGCGCCGAGGGCGTCGCGCGCGTCACGTCCACGGACCAGTCGCTCCTGCTCCGGCTCGCGTGCGGCGAGTTCGTGGCGGACCTCGACCATGCCGCCGGCACTGCCGCGCGCCTCGGGGCGCGGTGCTGCGCGGGCGCGCCGTTCCTGCACGATTTCGACCGCGTCTACGCCGAGGCGAAGCGCGGGAACGGCCTCGCGCGGCTGGACGCGACGGTTGGGTTCTACAGGGGCGCGGCGAAGCGGTTCAGGAAGATGGAGCGGCACGTGGCTGCGACGGCGAAGCTGTACGCGGAGATGGACGCGCTCAGCGAGCTGGAGGCGTCGGAGCGGCGGATGGAGCAGTGGATGAGGCATAGCGGGCCGATCCCGGCGCAGCCGGGGCCATCGGCCAAGAGGCAGGTCCCCGAACCTGGCGAGAAGCTGATACGCGAGCTCAACTCGCAGCGGCAGAAGGTGCGCCGACTCATGGAGAGCTCGCTCTGGAGTGTCGCCGCGCACAAGGTATCCAAGCTCATGGCCAAGTCGGTGCTCGCCGTGCTCGCGCGCATCTCAATAACATTCGGTGCGTACGTGCCGGGCTTGCCGCTTTTGACAGTAGGTCGCGCGTGGGCGCTCCGCCGCACGTCTGGCCCCTTACAGCAGGCGGCGTCACCGGCCGCGGCGATCCGGCACTCGGCTCCCATCTTTCGGCAGAAAGACACCGCCTTTTCAGCGTCGGAGTCCATCAAGCCCCCGGCGAGCACGGTTGGCGGCTCGGGGATGGAGCTGCGATACGCGAACATGATCGTGTGCGCCGAGATGCTGCTCAGGCAACTTTGGCCAACGATCCACAGCAACGAGGTGGACGCCGGGATGGATCTCTCGAAGAGAGACGAGCTGTACAAGATGCTGCCTGTGACCATCCGCACGGCCGTGAAGGCGAAGCTGAGAGAGAGCTGGAGAGGGCAGCCAGTGGACGAGGCTGCGGCGGCGGCGTCGATGGACGCGGTGGACAGGATGCTGCGGTGGTTGGGGCCTATGGCGCACGACACGGTGCGGTGGCACGACGAGCATAGCATGGAGCGGGCGCAGCGGTTCAGCATGCGGCCGCGCGTGCTGATGGTGCAGACGCTGCACTTCGCCGACCGGCACAAGGCAGAGAATGTCATCGTCGAGGTGCTCATCGGGCTCAGCTGCGTTTGCTGGTACGACGATGAGCGACGCCGTCCGGCCGATTGGGACGACGACGACTAGACTGTTGGGTCTGGCGCTCTACTGCCCGGTATATTGGCATGGTATATAAGCATAAAGCATTTGTATCCACCATTATGGATACACCGCAGGACAATTTTTTTTGTTATGATTTGAAGAGTGACACTGTGTGCTAGCTAGCTAAATGTTCTTGCATCCCAGCGAGAAAAAACAATATGATACCACTGTAAATACGTGGTAATGTACATATGTTTATTCAAGGGTAGGACATGTCTATTGAAAATCATGTAAGTATGAATTTGTGACGCATTGGATTCATGGAATTGTCTAGATTACTCTAAAAAAAAGA]

[+] EMBL CB640787             [  CTTGGATACCGTCCGGTCGCGTGCTG GTTCTGCTCCTTCGCTGTTTAGACGCGTAATCCGCATGAACAATCCTGTCTCGATTTCATACTGATGATATTTGATCTGCTGCGCGGCTGCTCGTTACGTTGGGTGTTATTTGATAGTATTTCCTTGTGTTCTTGAGCTTGGTAAGTAAAGTGGTGCCGTGTCGGGTGTGAGGTTTTGGCATGCCCGCGGGGGCGAGGTCATGGCTCGCCGACCTGCGCGCGCGGTTCGGTGGCGGCGCCAGGGAGGAGGCGGGTCTCGGGATCCTGGCGTTCGAGGCGGCGGCGGCCATGTCGCGGC TCGTGTCGCTCCACCGCTCGCTGTCTGACGTGGAGGTCAGGAGGCTCCGCGCGGACGCGCTGCGCGCCGAGGGCGTCGCGCGCGTCACGTCCACGGACCAGTCGCTCCTGCTCCGGCTCGCGTGCGGCGAGTTCGTGGCGGACCTCGACCATGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL OSS11586A            [tagatcgcaACCGTCCGGNNG G NCTGNGTTCTGCTCCTTCGCTGTTTAGACGCGTAATCCGCATGAACAATCCTGTCTCGATTTCATACTGATGATATTTGATCTGCTGCGCGGCTGCTCGTTACGTTGGGTGTTATTTGATAGTATTTCCTTGTGTTCTTGAGCTTGGTAAGTAAAGTGGTGCCGTGTCGGGTGTGAGGTTTTGGCATACCCCCGGGGGCGAGGTCATGGCTCGCGGACCTTCGCGCNNGNTTCGGTGGCGGCGCAAGGGAGGAGGCGGG CTCGGGATCCTGGCG TCGAGGCGGCGGCGG CATGTCGGGGCTTCGTGTCGTTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CB663485             [                          TG GTTCTGCTCCTTCGCTGTTTAGACGCGTAATCCGCATGAACAATCCTGTCTCGATTTCATACTGATGATATTTGATCTGCTGCGCGGCTGCTCGTTACGTTGGGTGTTATTTGATAGTATTTCCTTGTGTTCTTGAGCTTGGTAAGTAAAGTGGTGCCGTGTCGGGTGTGAGGTTTTGGCATGCCCGCGGGGGCGAGGTCATGGCTCGCCGACCTGCGCGCGCGGTTCGGTGGCGGCGCCAGGGAGGAGGCGGGTCTCGGGATCCTGGCGTTCGAGGCGGCGGCGGCCATGTCGCGGC TCGTGTCGCTCCACCGCTCGCTGTCTGACGTGGAGGTCAGGAGGCTCCGCGCGGACGCGCTGCGCGCCGAGGGCGTCGCGCGCGTCACGTCCACGGACCAGTCGCTCCTGCTCCGGCTCGCGTGCGGCGAGTTCGTGGCGGACCTCGACCATGCCGCCGGCACTGCCGCGCGCCTCGGGGCGCGGTGCTGCGCGGGCGCGCCGTTCCTGCACGATTTCGACCGCGTCTACGCCGAGGCGAAGCGCGGGAACGGCCTCGCGCGGCTGGACGCGACGGTTGGGTTCTACAGGGGCGCGGCGAAGCGGTTCAGGAAGATGGAGCGGCACGTGGCTGCGACGGCGAAGCTGTACGCGGAGATGGACGCGCTCAGCGAGCTGGAGGCGTCGGAGCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CB645813             [                                                                                                                                                                                                                                                                                                                                         CGTGCCTCTCCACCGCTCGCTGTCTGACGTGGAGGTCAGGAGGCTCCGCGCGGACGCGCTGCGCGCCGAGGGCGTCGCGCGCGTCACGTCCACGGACCAGTCGCTCCTGCTCCGGCTCGCGTGCGGCGAGTTCGTGGCGGACCTCGACCATGCCGCCGGCACTGCCGCGCGCCTCGGGGCGCGGTGCTGCGCGGGCGCGCCGTTCCTGCACGATTTCGACCGCGTCTACGCCGAGGCGAAGCGCGGGAACGGCCTCGCGCGGCTGGACGCGACGGTTGGGTTCTACAGGGGCGCGGCGAAGCGGTTCAGGAAGATGGAGCGGCACGTGGCTGCGACGGCGAAGCTGTACGCGGAGATGGACGCGCTCAGCGAGCTGGAGGCGTCGGAGCGGCGGATGGAGCAGTGGATGAGGCATAGCGGGCCGATCCCGGCGCAGCCGGGGCCATCGGCCAAGAGGCAGGTCCCCGAACCTGGCGAGAAGCTGATACGCGAGCTCAACTCGCAGCGGCAGAAGGTGCGCCGACTCATGGAGAGCTCGCTCTGGAGTGTCGCCGCGCACAAGGTATCCAAGCTCATGGCCAAGTCGGTGCTCGCCGTGCTCGCGCGCATCTCAATAACATTCGGTGCGTACGTGCCGGGCTTGCCGCTTTTGACAGTAGGTCGCGCGTGGGCGCTCCGCCGCACGTCTGGCCCCTTACAGCAGGCGGCGTCACCGGCCGCGGCGATCCGGCACTCGGCTCCCATCTTTCGGCAGAAAGACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AK108185             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GCCATCGGCCAAGAGGCAGGTCCCCGAACCTGGCGAGAAGCTGATACGCGAGCTCAACTCGCAGCGGCAGAAGGTGCGCCGACTCATGGAGAGCTCGCTCTGGAGTGTCGCCGCGCACAAGGTATCCAAGCTCATGGCCAAGTCGGTGCTCGCCGTGCTCGCGCGCATCTCAATAACATTCGGTGCGTACGTGCCGGGCTTGCCGCTTTTGACAGTAGGTCGCGCGTGGGCGCTCCGCCGCACGTCTGGCCCCTTACAGCAGGCGGCGTCACCGGCCGCGGCGATCCGGCACTCGGCTCCCATCTTTCGGCAGAAAGACACCGCCTTTTCAGCGTCGGAGTCCATCAAGCCCCCGGCGAGCACGGTTGGCGGCTCGGGGATGGAGCTGCGATACGCGAACATGATCGTGTGCGCCGAGATGCTGCTCAGGCAACTTTGGCCAACGATCCACAGCAACGAGGTGGATGCCGGGATGGATCTCTCGAAGAGAGACGAGCTGTACAAGATGCTGCCTGTGACCATCCGCACGGCCGTGAAGGCGAAGCTGAGAGAGAGCTGGAGAGGGCAGCCAGTGGACGAGGCTGCGGCGGCGGCGTCGATGGACGCGGTGGACAGGATGCTGCGGTGGTTGGGGCCTATGGCGCACGACACGGTGCGGTGGCACGACGAGCATAGCATGGAGCGGGCGCAGCGGTTCAGCATGCGGCCGCGCGTGCTGATGGTGCAGACGCTGCACTTCGCCGACCGGCACAAGGCAGAGAATGTCATCGTCGAGGTGCTCATCGGGCTCAGCTGCGTTTGCTGGTACGACGATGAGCGACGCCGTCCGGCCGATTGGGACGACGACGACTAGACTGTTGGGTCTGGCGCTCTACTGCCCGGTATATTGGCATGGTATATAAGCATAAAGCATTTGTATCCACCATTATGGATACACCGCAGGACAATTTTTTTTGTTATGATTTGAAGAGTGACACTGTGTGCTAGCTAGCTAAAAGTTCTTGCATCCCAGCGAGAAAAAACAATATGATACCACTGTAAATACGTGGTAATGTACATATGTTTATTCAAGGGTAGGACATGTCTATTGAAAATCATGTAAGTATGAATTTGTGAC                                           ]
[-] EMBL CB645814             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CCCCCGGCGAGCACGGTTGGCGGCTCGGGGATGGAGCTGCGATACGCGAACATGATCGTGTGCGCCGAGATGCTGCTCAGGCAACTTTGGCCAACGATCCACAGCAACGAGGTGGACGCCGGGATGGATCTCTCGAAGAGAGACGAGCTGTACAAGATGCTGCCTGTGACCATCCGCACGGCCGTGAAGGCGAAGCTGAGAGAGAGCTGGAGAGGGCAGCCAGTGGACGAGGCTGCGGCGGCGGCGTCGATGGACGCGGTGGACAGGATGCTGCGGTGGTTGGGGCCTATGGCGCACGACACGGTGCGGTGGCACGACGAGCATAGCATGGAGCGGGCGCAGCGGTTCAGCATGCGGCCGCGCGTGCTGATGGTGCAGACGCTGCACTTCGCCGACCGGCACAAGGCAGAGAATGTCATCGTCGAGGTGCTCATCGGGCTCAGCTGCGTTTGCTGGTACGACGATGAGCGACGCCGTCCGGCCGATTGGGACGACGACGACTAGACTGTTGGGTCTGGCGCTCTACTGCCCGGTATATTGGCATGGTATATAAGCATAAAGCATTTGTATCCACCATTATGGATACACCGCAGGACAATTTTTTTTGTTATGATTTGAAGAGTGACACTGTGTGCTAGCTAGCTAAATGTTCTTGCATCCCAGCGAGAAAAAACAATATGATACCACTGTAAATACGTGGTAATGTACATATGTTTATTCAAGGGTAGGACATGTCTATTGAAAATCATGTAAGTATGAATTTGTGGCGCATTGGATTCATGGAATTGTCTAGATTACTCTAAAAAAAAGA]
[-] EMBL CB663486             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TGGCCAACGATCCACAGCAACGAGGTGGACGCCGGGATGGATCTCTCGAAGAGAGACGAGCTGTACAAGATGCTGCCTGTGACCATCCGCACGGCCGTGAAGGCGAAGCTGAGAGAGAGCTGGAGAGGGCAGCCAGTGGACGAGGCTGCGGCGGCGGCGTCGATGGACGCGGTGGACAGGATGCTGCGGTGGTTGGGGCCTATGGCGCACGACACGGTGCGGTGGCACGACGAGCATAGCATGGAGCGGGCGCAGCGGTTCAGCATGCGGCCGCGCGTGCTGATGGTGCAGACGCTGCACTTCGCCGACCGGCACAAGGCAGAGAATGTCATCGTCGAGGTGCTCATCGGGCTCAGCTGCGTTTGCTGGTACGACGATGAGCGACGCCGTCCGGCCGATTGGGACGACGACGACTAGACTGTTGGGTCTGGCGCTCTACTGCCCGGTATATTGGCATGGTATATAAGCATAAAGCATTTGTATCCCCCATTATGGATACCCCGCAGGACAATTTTTTTTGTTATGATTTGAAGAGTGACACTGTGTGCTAGCTAGCTAAATGTTCTTGCATCCCAGCGAGAAAAAACAATATGATACCCCTGTAAATACGTGGTAATGTACATATGTTTATTCAAGGGTAGGACATGTCTATTGAAAATCATGTAAGTATGAATTTGTGAC CATTGGATTCATGGAATTGTCTAGATTACTCTAtat      ]


>consensus_9935#0 TACTTGGATACCGTCCGGTCGCGTGCTGGTTCTGCTCCTTCGCTGTTTAGACGCGTAATC CGCATGAACAATCCTGTCTCGATTTCATACTGATGATATTTGATCTGCTGCGCGGCTGCT CGTTACGTTGGGTGTTATTTGATAGTATTTCCTTGTGTTCTTGAGCTTGGTAAGTAAAGT GGTGCCGTGTCGGGTGTGAGGTTTTGGCATGCCCGCGGGGGCGAGGTCATGGCTCGCCGA CCTGCGCGCGCGGTTCGGTGGCGGCGCCAGGGAGGAGGCGGGTCTCGGGATCCTGGCGTT CGAGGCGGCGGCGGCCATGTCGCGGCTCGTGTCGCTCCACCGCTCGCTGTCTGACGTGGA GGTCAGGAGGCTCCGCGCGGACGCGCTGCGCGCCGAGGGCGTCGCGCGCGTCACGTCCAC GGACCAGTCGCTCCTGCTCCGGCTCGCGTGCGGCGAGTTCGTGGCGGACCTCGACCATGC CGCCGGCACTGCCGCGCGCCTCGGGGCGCGGTGCTGCGCGGGCGCGCCGTTCCTGCACGA TTTCGACCGCGTCTACGCCGAGGCGAAGCGCGGGAACGGCCTCGCGCGGCTGGACGCGAC GGTTGGGTTCTACAGGGGCGCGGCGAAGCGGTTCAGGAAGATGGAGCGGCACGTGGCTGC GACGGCGAAGCTGTACGCGGAGATGGACGCGCTCAGCGAGCTGGAGGCGTCGGAGCGGCG GATGGAGCAGTGGATGAGGCATAGCGGGCCGATCCCGGCGCAGCCGGGGCCATCGGCCAA GAGGCAGGTCCCCGAACCTGGCGAGAAGCTGATACGCGAGCTCAACTCGCAGCGGCAGAA GGTGCGCCGACTCATGGAGAGCTCGCTCTGGAGTGTCGCCGCGCACAAGGTATCCAAGCT CATGGCCAAGTCGGTGCTCGCCGTGCTCGCGCGCATCTCAATAACATTCGGTGCGTACGT GCCGGGCTTGCCGCTTTTGACAGTAGGTCGCGCGTGGGCGCTCCGCCGCACGTCTGGCCC CTTACAGCAGGCGGCGTCACCGGCCGCGGCGATCCGGCACTCGGCTCCCATCTTTCGGCA GAAAGACACCGCCTTTTCAGCGTCGGAGTCCATCAAGCCCCCGGCGAGCACGGTTGGCGG CTCGGGGATGGAGCTGCGATACGCGAACATGATCGTGTGCGCCGAGATGCTGCTCAGGCA ACTTTGGCCAACGATCCACAGCAACGAGGTGGACGCCGGGATGGATCTCTCGAAGAGAGA CGAGCTGTACAAGATGCTGCCTGTGACCATCCGCACGGCCGTGAAGGCGAAGCTGAGAGA GAGCTGGAGAGGGCAGCCAGTGGACGAGGCTGCGGCGGCGGCGTCGATGGACGCGGTGGA CAGGATGCTGCGGTGGTTGGGGCCTATGGCGCACGACACGGTGCGGTGGCACGACGAGCA TAGCATGGAGCGGGCGCAGCGGTTCAGCATGCGGCCGCGCGTGCTGATGGTGCAGACGCT GCACTTCGCCGACCGGCACAAGGCAGAGAATGTCATCGTCGAGGTGCTCATCGGGCTCAG CTGCGTTTGCTGGTACGACGATGAGCGACGCCGTCCGGCCGATTGGGACGACGACGACTA GACTGTTGGGTCTGGCGCTCTACTGCCCGGTATATTGGCATGGTATATAAGCATAAAGCA TTTGTATCCACCATTATGGATACACCGCAGGACAATTTTTTTTGTTATGATTTGAAGAGT GACACTGTGTGCTAGCTAGCTAAATGTTCTTGCATCCCAGCGAGAAAAAACAATATGATA CCACTGTAAATACGTGGTAATGTACATATGTTTATTCAAGGGTAGGACATGTCTATTGAA AATCATGTAAGTATGAATTTGTGACGCATTGGATTCATGGAATTGTCTAGATTACTCTAA AAAAAAGA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)