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Oryza sativa
cluster # 9938 cluster # 9938       Sequences # 7       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9938#0 length = 2587 sequences # 4  
consensus_9938#1 length = 610 sequences # 1  
consensus_9938#2 length = 437 sequences # 1  
consensus_9938#3 length = 181 sequences # 1  

consensusID : consensus_9938#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 2587
fasta sequence
                              [GCATAGTGAGCTCTCCCGTGCCACCGACAGGTGGGCCCCACCCGCGCGGCGGAAGGTTCTAGGCTCTCCGGCGAAGGTTCTGGAAGGTTCGGGAGGAGGGGGGAGATGATTCTGTCGGCGCTCGCGACTTCGGTGGGGATCAACCTGGGGCTGACGGTGCTCCTCGCGGCGGCGTACACGCTGCTCCGGCGGCGCCCGCCGTACGTCGCCGTGTACTCGCCGCGGCGGCCGTACGCGCCGCCGGAGCCGTGGCTGCCCGCGGCGTGGCGCCGCACCGAGGCCGACGTCCACGCCGCCGCCGGGCTCGACGGCGTCGTCTTCCTCCGCATCTTCGTCTTCAGCATTAGGGTGTTCGCGGCGGCGGCGGTGGTGGGGGTGGGAGTGCTGATGCCGGTGAACTTCATGGGGGACCAGCTGCGGCAGATTGACTTCTCCGATCTGCCCAACAAGTCCGTCGATCTCTTCAGCGTCTCCAACGTGCAGGATGGCTCCAACAAATTGTGGCTCCACTTTTCGGCTGTGTACATCATAACTGGAATTACATGCTACCTCCTTTATTATGAATACAAATATATTTCTGGCAAGAGGCTCGAATATTTTATGACATCAAAACCACTACCTCAGCATTTCACAGTTCTAGTTCGAGCTATACCTGTAACCAATGGTGTGTCTGTGAGTGATGCTGTTGATAAGTTCTTCAAAGAGTACCATTCATCTACCTACTTGTCACACACTGTTGTTCATCAAACTGGCAAACTCCGCCGCCTTCTTAATGACGCTGAGAATATTTGCACAAAGCTTGCCAACTTGAAGTCTGTACGGCGTACTTCTGGAGATCCTCCAGGAAAATTTCTTGGAATATTTGGCAGAAATGATCTTGTTGGGAAATATCAGAAAAGGCTGGAGGACCTAGAAGAAAATGTTAGAATGGAACAATCAGACACTACTAGGAGCAGACAGGAAGTTCCCGCTGCTTTTGTGTCATTCAGATCTCGATATGGTGCTGCAAATGCTATTTACATAAGACAATCAGACAAGCCTACTGAGTGGCAGACTGAGCATGCTCCTGATCCCCATGACGTTTATTGGCCTTTCTTTTCAACATCATTCATGGACAGATGGATATCCAAGTTTGTAGTCTCTGTAGCTTCTATTCTCCTGATACTCGTCTTTCTCCTAGTTTCGGCATTTGTTCAAGGACTCACCTATATGGAACAGCTAGAGACATGGTTGCCTTTCCTGAGAAATATACTGGAAATAGCTGTTGTCAGTCAGTTGGTTACAGGATATCTTCCCAGTGTCATTCTTCACTTTCTTTCCTCTTATGTGCCCTCTATAATGAAGCTGTTTTCAACAATGCAAGGATTCATCTCTGTTAGTGGGATTGAGAGAAGTGCTTGCAACAAAATGCTTCGGTTTACAATATGGAGTGTGTTCTTTGCAAATGTTCTTACTGGCTCAGTACTTGGTCAACTCGAGATATTCCTTGATCCGAAGGAAATCCCTAAAAGGCTTGCAGTTGTTGTACCAGCACAGGCCTCTTTCTTTATTACATATGTTGTGACATCTTGGACAAGTATAGCATCAGAACTTACTCAAACTGCTGCCCTTTTATTCCATTTGTGGGGTAGCTGTGCAAAATGCTGCAAGAGGGATGAGTCCAAACCTCCATCAATGCATTACCATAGTGAAATTCCTCGGGTTCTCCTGTTTGGACTTCTTGGGCTCACATACTTCATTGTATCCCCACTTATCCTCCCATTTGTACTGGTTTACTTCTGCCTTGGCTACTTCATATATCGTAATCAGCTTTTTAATGTATCTTCACCCAAGTATGACACTGGTGGAAGATTCTGGCCCATTGTGCACGG-GGGAACAATATTTTCTCTGGTGCTGATGCATGTTATTGCAATTGGAGTATTTGGATTGAAGAAACTT-CCCCTTGCATCAAGTTTGCTGGTACCTCTTCCAGTGCTGACCCTTCTGTTCAATGAATACTGCCGGAACAGATTTTTACCGATCTTCGAAGCATATTCTACTGAGTCATTGATAAAGAAAGACAGAGAAGAAGAGAGCAAACCAGAAATGGCAGAATTCTTCAGCAATCTTGTAAATGCGTACTGTGACCCGGCGATGAAACCTATCCAACACTCCTCGAATTCAGATGAACGCACTACCCCTCTATTGTCTTAGATCCAGATAAGTAATAGCTTGCAGCCTTACTGTCATGGCGTGAATTTTGGTTTGACACCGATAATCAGGCATACAACAATACACCTGTGCTTCTTCTTGTGATGTTACTGTTGTAAAGCATTACTACAGACTTGACTGTGGAGTTGTTGTGCATATTTGATTTGTACATCTTAATTTGTGCTTACTGCGTAGAGATGAATAATGCATTGCTCCTTAATGAAGTGCTGTCAATGCAAACCTGTGTGGGTTGTACTTCTAGATATGTCAAATCACCTTTATTTGTTCCCTTCAAATTTTGTGTATATGGATGTTCTTTTGCTTCAACCTATTCAGTAATGAGATTATTTGGCAGTTGGAATGATGTGATATTAGTACTGATACATTATTATCAGTT]

[+] EMBL AK111649             [GCATAGTGAGCTCTCCCGTGCCACCGACAGGTGGGCCCCACCCGCGCGGCGGAAGGTTCTAGGCTCTCCGGCGAAGGTTCTGGAAGGTTCGGGAGGAGGGGGGAGATGATTCTGTCGGCGCTCGCGACTTCGGTGGGGATCAACCTGGGGCTGACGGTGCTCCTCGCGGCGGCGTACACGCTGCTCCGGCGGCGCCCGCCGTACGTCGCCGTGTACTCGCCGCGGCGGCCGTACGCGCCGCCGGAGCCGTGGCTGCCCGCGGCGTGGCGCCGCACCGAGGCCGACGTCCACGCCGCCGCCGGGCTCGACGGCGTCGTCTTCCTCCGCATCTTCGTCTTCAGCATTAGGGTGTTCGCGGCGGCGGCGGTGGTGGGGGTGGGAGTGCTGATGCCGGTGAACTTCATGGGGGACCAGCTGCGGCAGATTGACTTCTCCGATCTGCCCAACAAGTCCGTCGATCTCTTCAGCGTCTCCAACGTGCAGGATGGCTCCAACAAATTGTGGCTCCACTTTTCGGCTGTGTACATCATAACTGGAATTACATGCTACCTCCTTTATTATGAATACAAATATATTTCTGGCAAGAGGCTCGAATATTTTATGACATCAAAACCACTACCTCAGCATTTCACAGTTCTAGTTCGAGCTATACCTGTAACCAATGGTGTGTCTGTGAGTGATGCTGTTGATAAGTTCTTCAAAGAGTACCATTCATCTACCTACTTGTCACACACTGTTGTTCATCAAACTGGCAAACTCCGCCGCCTTCTTAATGACGCTGAGAATATTTGCACAAAGCTTGCCAACTTGAAGTCTGTACGGCGTACTTCTGGAGATCCTCCAGGAAAATTTCTTGGAATATTTGGCAGAAATGATCTTGTTGGGAAATATCAGAAAAGGCTGGAGGACCTAGAAGAAAATGTTAGAATGGAACAATCAGACACTACTAGGAGCAGACAGGAAGTTCCCGCTGCTTTTGTGTCATTCAGATCTCGATATGGTGCTGCAAATGCTATTTACATAAGACAATCAGACAAGCCTACTGAGTGGCAGACTGAGCATGCTCCTGATCCCCATGACGTTTATTGGCCTTTCTTTTCAACATCATTCATGGACAGATGGATATCCAAGTTTGTAGTCTCTGTAGCTTCTATTCTCCTGATACTCGTCTTTCTCCTAGTTTCGGCATTTGTTCAAGGACTCACCTATATGGAACAGCTAGAGACATGGTTGCCTTTCCTGAGAAATATACTGGAAATAGCTGTTGTCAGTCAGTTGGTTACAGGATATCTTCCCAGTGTCATTCTTCACTTTCTTTCCTCTTATGTGCCCTCTATAATGAAGCTGTTTTCAACAATGCAAGGATTCATCTCTGTTAGTGGGATTGAGAGAAGTGCTTGCAACAAAATGCTTCGGTTTACAATATGGAGTGTGTTCTTTGCAAATGTTCTTACTGGCTCAGTACTTGGTCAACTCGAGATATTCCTTGATCCGAAGGAAATCCCTAAAAGGCTTGCAGTTGTTGTACCAGCACAGGCCTCTTTCTTTATTACATATGTTGTGACATCTTGGACAAGTATAGCATCAGAACTTACTCAAACTGCTGCCCTTTTATTCCATTTGTGGGGTAGCTGTGCAAAATGCTGCAAGAGGGATGAGTCCAAACCTCCATCAATGCATTACCATAGTGAAATTCCTCGGGTTCTCCTGTTTGGACTTCTTGGGCTCACATACTTCATTGTATCCCCACTTATCCTCCCATTTGTACTGGTTTACTTCTGCCTTGGCTACTTCATATATCGTAATCAGCTTTTTAATGTATCTTCACCCAAGTATGACACTGGTGGAAGATTCTGGCCCATTGTGCACGG GGGAACAATATTTTCTCTGGTGCTGATGCATGTTATTGCAATTGGAGTATTTGGATTGAAGAAACTT CCCCTTGCATCAAGTTTGCTGGTACCTCTTCCAGTGCTGACCCTTCTGTTCAATGAATACTGCCGGAACAGATTTTTACCGATCTTCGAAGCATATTCTACTGAGTCATTGATAAAGAAAGACAGAGAAGAAGAGAGCAAACCAGAAATGGCAGAATTCTTCAGCAATCTTGTAAATGCGTACTGTGACCCGGCGATGAAACCTATCCAACACTCCTCGAATTCAGATGAACGCACTACACCTCTATTGTCTTAGATCCAGATAAGTAATAGCTTGCAGCCTTACTGTCATGGCGTGAATTTTGGTTTGACACCGATAATCAGGCATACAACAATACACCTGTGCTTCTTCTTGTGATGTTACTGTTGTAAAGCATTACTACATACTTGACTGTGGAGTTGTTGTGCATATTTGATTTGTACATCTTAATTTGTGCTTACTGCGTAGAGATGAATAATGCATTGCTCCTTAATGAAGTGCTGTCAATGCAAACCTGTGTGGGTTGTACTTCTAGATATGTCAAATCACCTTTATTTGTTCCCTTCAAATTTTGTGTATATGGATGTTCTTTTGCTTCAACCTATTCAGTAATGAGATTATTTGGCAGTTGGAATGATGTGATATTAGTACTGATACATTATTATCAGTT]
[+] EMBL AU173948             [                                                                                          GGGAGGAGGGGGGAGATGATTCTGTCGGCGCTCGCGACTTCGGTGGGGATCAACCTGGGGCTGACGGTGCTCCTCGCGGCGGCGTACACGCTGCTCCGGCGGCGCCCGCCGTACGTCGCCGTGTACTCGCCGCGGCGGCCGTACGCGCCGCCGGAGCCGNGGCTGCCCGCGGNGTGGCNCCn                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CA762102             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GTATGACACTGGTGGAAGATTCTGGCCCATTGTGCACGG GGGAACAATATTTTCTCTGGTGCTGATGCATGTTACTGCAATTGGAGTATTTGGATTGAAGAAACTTCCCCCCTGCATCAAGTTTGCTGGTACCTCTTCCAGTGCTGACCCTTCTGTTCAATGAATACTGCCGGAACAGATTTTTACCGATCTTCGAAGCATATTCTACTGAGTCATTGATAAAGAAAGNCAGAGAAGAAGAGAGCAAACCAGAAATGGCAGAATTCTTCAGCAATCTTGTAAATGCGTACTGTGACCCGGCGATGAAACCTATCCAACACTCCTCGAATTCAGATGAACGCACTACCCCTCTATTGTCTTAGATCCAGATAAGTAATAGCTTGCAGCCTTACTGTCATGGCGAGAATTTTGGTTTGACACCGATAATCAGGCATACAACAATACACCTGTGCTTCTTCTTGTGATGTTACTGTTGTAAAGCATTACTACAGACTTGACTGTGGAGTTGTTGTGCATATTTGATTTGTACATCTTAATTTGTGCTTACTGCGTAGAGATGAATAATGCATTGCTCCTTAATGAAGTGCTGTCAATGCAAACCTGTGTGGGTTGTACTTCTAGATATGTCAAATCACCTTTATTTGTTCCCTTCAAATTTTGTGTATATGGATGTTCTTTTGCTTCAAaaaaaa                                                                ]
[+] EMBL CB630313             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TGTGCCCGGTGGGAACAATATTTTCTCTGGTGCTGATGCATGTTATTGCAATTGGAGTATTTGGATTGAAGAAACTT CCCCTTGCATCAAGTTTGCTGGTACCTCTTCCAGTGCTGACCCTTCTGTTCAATGAATACTGCCGGAACAGATTTTTACCGATCTTCGAAGCATATTCTACTGAGTCATTGATAAAGAAAGACAGAGAAGAAGAGAGCAAACCAGAAATGGCAGAATTCTTCAGCAATCTTGTAAATGCGTACTGTGACCCGGCGATGAAACCTATCCAACACTCCTCGAATTCAGATGAACGCACTACCCCTCTATTGTCTTAGATCCAGATAAGTAATAGCTTGCAGCCTTACTGTCATGGCGTGAATTTTGGTTTGACACCGATAATCAGGCATACAACAATACACCTGTGCTTCTTCTTGTGATGTTACTGTTGTAAAGCATTACTACAGACTTGACTGTGGAGTTGTTGTGCATATTTGATTTGTACATCTTAATTTGTGCTTACTGCGTAGAGATGAATAATGCATTGCTCCTTAATGAAGTGCTGTCAATGCAAACCTGTGTGGGTTGTACTTCTAGATATGTCAAATCACCTTTATTTGTTCCCTTCAAATTTTGTGTATATGGATGTTC                                                                                 ]


>consensus_9938#0 GCATAGTGAGCTCTCCCGTGCCACCGACAGGTGGGCCCCACCCGCGCGGCGGAAGGTTCT AGGCTCTCCGGCGAAGGTTCTGGAAGGTTCGGGAGGAGGGGGGAGATGATTCTGTCGGCG CTCGCGACTTCGGTGGGGATCAACCTGGGGCTGACGGTGCTCCTCGCGGCGGCGTACACG CTGCTCCGGCGGCGCCCGCCGTACGTCGCCGTGTACTCGCCGCGGCGGCCGTACGCGCCG CCGGAGCCGTGGCTGCCCGCGGCGTGGCGCCGCACCGAGGCCGACGTCCACGCCGCCGCC GGGCTCGACGGCGTCGTCTTCCTCCGCATCTTCGTCTTCAGCATTAGGGTGTTCGCGGCG GCGGCGGTGGTGGGGGTGGGAGTGCTGATGCCGGTGAACTTCATGGGGGACCAGCTGCGG CAGATTGACTTCTCCGATCTGCCCAACAAGTCCGTCGATCTCTTCAGCGTCTCCAACGTG CAGGATGGCTCCAACAAATTGTGGCTCCACTTTTCGGCTGTGTACATCATAACTGGAATT ACATGCTACCTCCTTTATTATGAATACAAATATATTTCTGGCAAGAGGCTCGAATATTTT ATGACATCAAAACCACTACCTCAGCATTTCACAGTTCTAGTTCGAGCTATACCTGTAACC AATGGTGTGTCTGTGAGTGATGCTGTTGATAAGTTCTTCAAAGAGTACCATTCATCTACC TACTTGTCACACACTGTTGTTCATCAAACTGGCAAACTCCGCCGCCTTCTTAATGACGCT GAGAATATTTGCACAAAGCTTGCCAACTTGAAGTCTGTACGGCGTACTTCTGGAGATCCT CCAGGAAAATTTCTTGGAATATTTGGCAGAAATGATCTTGTTGGGAAATATCAGAAAAGG CTGGAGGACCTAGAAGAAAATGTTAGAATGGAACAATCAGACACTACTAGGAGCAGACAG GAAGTTCCCGCTGCTTTTGTGTCATTCAGATCTCGATATGGTGCTGCAAATGCTATTTAC ATAAGACAATCAGACAAGCCTACTGAGTGGCAGACTGAGCATGCTCCTGATCCCCATGAC GTTTATTGGCCTTTCTTTTCAACATCATTCATGGACAGATGGATATCCAAGTTTGTAGTC TCTGTAGCTTCTATTCTCCTGATACTCGTCTTTCTCCTAGTTTCGGCATTTGTTCAAGGA CTCACCTATATGGAACAGCTAGAGACATGGTTGCCTTTCCTGAGAAATATACTGGAAATA GCTGTTGTCAGTCAGTTGGTTACAGGATATCTTCCCAGTGTCATTCTTCACTTTCTTTCC TCTTATGTGCCCTCTATAATGAAGCTGTTTTCAACAATGCAAGGATTCATCTCTGTTAGT GGGATTGAGAGAAGTGCTTGCAACAAAATGCTTCGGTTTACAATATGGAGTGTGTTCTTT GCAAATGTTCTTACTGGCTCAGTACTTGGTCAACTCGAGATATTCCTTGATCCGAAGGAA ATCCCTAAAAGGCTTGCAGTTGTTGTACCAGCACAGGCCTCTTTCTTTATTACATATGTT GTGACATCTTGGACAAGTATAGCATCAGAACTTACTCAAACTGCTGCCCTTTTATTCCAT TTGTGGGGTAGCTGTGCAAAATGCTGCAAGAGGGATGAGTCCAAACCTCCATCAATGCAT TACCATAGTGAAATTCCTCGGGTTCTCCTGTTTGGACTTCTTGGGCTCACATACTTCATT GTATCCCCACTTATCCTCCCATTTGTACTGGTTTACTTCTGCCTTGGCTACTTCATATAT CGTAATCAGCTTTTTAATGTATCTTCACCCAAGTATGACACTGGTGGAAGATTCTGGCCC ATTGTGCACGGGGGAACAATATTTTCTCTGGTGCTGATGCATGTTATTGCAATTGGAGTA TTTGGATTGAAGAAACTTCCCCTTGCATCAAGTTTGCTGGTACCTCTTCCAGTGCTGACC CTTCTGTTCAATGAATACTGCCGGAACAGATTTTTACCGATCTTCGAAGCATATTCTACT GAGTCATTGATAAAGAAAGACAGAGAAGAAGAGAGCAAACCAGAAATGGCAGAATTCTTC AGCAATCTTGTAAATGCGTACTGTGACCCGGCGATGAAACCTATCCAACACTCCTCGAAT TCAGATGAACGCACTACCCCTCTATTGTCTTAGATCCAGATAAGTAATAGCTTGCAGCCT TACTGTCATGGCGTGAATTTTGGTTTGACACCGATAATCAGGCATACAACAATACACCTG TGCTTCTTCTTGTGATGTTACTGTTGTAAAGCATTACTACAGACTTGACTGTGGAGTTGT TGTGCATATTTGATTTGTACATCTTAATTTGTGCTTACTGCGTAGAGATGAATAATGCAT TGCTCCTTAATGAAGTGCTGTCAATGCAAACCTGTGTGGGTTGTACTTCTAGATATGTCA AATCACCTTTATTTGTTCCCTTCAAATTTTGTGTATATGGATGTTCTTTTGCTTCAACCT ATTCAGTAATGAGATTATTTGGCAGTTGGAATGATGTGATATTAGTACTGATACATTATT ATCAGTT



consensusID : consensus_9938#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 610
fasta sequence
                              [AGAGGACGAGACAAGGGGGTTTGACACTGGTGGAAGATTCTGGCCCATTGTGCACGGGGGAACAATATTTTCTCTGGTGCTGATGCATGTTATTGCAATTGGAGTATTTGGATTGAAGAAACTTCCCCCTTGCATCAAGTTTGCTGGTACCTCTTCCAGTGCTGACCCTTCTGTTCAATGAATACTGCCGGAACAGATTTTTACCGATCTTCGAAGCATATTCTACTGAGTCATTGATAAAGAAAGCCAGAGAAGAAGAGAGCAAGCCAGAAATGGCAGAATTCTTCAGCAATCTTGTAAATGCGTACTGTGACCCGGCGATGAAACCTATCCAACACTCCTCGAATTTAGATGAACGCACTACCCCTCTATTGTCTTAGATCCAGATAAGTAATAGCTTGCAGCCTTACTGTCATGGCGTGAATTTTGGTTTGACACCGATAATCAGGCATACAACAATACACCTGTGCTTCTTCTTGTGATGTTACTGTTGTAAAGCATTACTACAGACTTGACTGTGGAGTTGTTGTGCATATTTGATTTGTACATCTTAATTTGTGCTTACTGCGTAGAGATGAATAATGCATTGCTCCTTAAAAAAAAAAAAAAA]

[-] EMBL CA762103             [AGAGGACGAGACAAGGGGGTTTGACACTGGTGGAAGATTCTGGCCCATTGTGCACGGGGGAACAATATTTTCTCTGGTGCTGATGCATGTTATTGCAATTGGAGTATTTGGATTGAAGAAACTTCCCCCTTGCATCAAGTTTGCTGGTACCTCTTCCAGTGCTGACCCTTCTGTTCAATGAATACTGCCGGAACAGATTTTTACCGATCTTCGAAGCATATTCTACTGAGTCATTGATAAAGAAAGCCAGAGAAGAAGAGAGCAAGCCAGAAATGGCAGAATTCTTCAGCAATCTTGTAAATGCGTACTGTGACCCGGCGATGAAACCTATCCAACACTCCTCGAATTTAGATGAACGCACTACCCCTCTATTGTCTTAGATCCAGATAAGTAATAGCTTGCAGCCTTACTGTCATGGCGTGAATTTTGGTTTGACACCGATAATCAGGCATACAACAATACACCTGTGCTTCTTCTTGTGATGTTACTGTTGTAAAGCATTACTACAGACTTGACTGTGGAGTTGTTGTGCATATTTGATTTGTACATCTTAATTTGTGCTTACTGCGTAGAGATGAATAATGCATTGCTCCTTAAAAAAAAAAAAAAA]


>consensus_9938#1 AGAGGACGAGACAAGGGGGTTTGACACTGGTGGAAGATTCTGGCCCATTGTGCACGGGGG AACAATATTTTCTCTGGTGCTGATGCATGTTATTGCAATTGGAGTATTTGGATTGAAGAA ACTTCCCCCTTGCATCAAGTTTGCTGGTACCTCTTCCAGTGCTGACCCTTCTGTTCAATG AATACTGCCGGAACAGATTTTTACCGATCTTCGAAGCATATTCTACTGAGTCATTGATAA AGAAAGCCAGAGAAGAAGAGAGCAAGCCAGAAATGGCAGAATTCTTCAGCAATCTTGTAA ATGCGTACTGTGACCCGGCGATGAAACCTATCCAACACTCCTCGAATTTAGATGAACGCA CTACCCCTCTATTGTCTTAGATCCAGATAAGTAATAGCTTGCAGCCTTACTGTCATGGCG TGAATTTTGGTTTGACACCGATAATCAGGCATACAACAATACACCTGTGCTTCTTCTTGT GATGTTACTGTTGTAAAGCATTACTACAGACTTGACTGTGGAGTTGTTGTGCATATTTGA TTTGTACATCTTAATTTGTGCTTACTGCGTAGAGATGAATAATGCATTGCTCCTTAAAAA AAAAAAAAAA



consensusID : consensus_9938#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 437
fasta sequence
                              [CCAGCTGCGGCAGATTGACTTCTCCGATCTGCCCAACAAGTCCGTCGATCTCTTCAGCGTCTCCAACGTGCAGGATGGCTCCAACAAGTGAGCTATTTCGAGCTTCCTGATGCCTAATTTTTGTTCGCGGATTTAGGGGGTTTTAGTGGGTTTTGTGTGATTGTTAGTGCTTCAAGGTGGATACAATTGTTTAATAATAATAAATTACGTGCCAGTTATAGATTAAATTCTCGTTTTCGTATTAGGAGGATGAATCTCTTGGATTGTTTTAATGAGGTTGAGTATTTTGTTTATGCTAGTGGCTATTGAGATGTTCAGAGTATGCTTCACTGCACAGTTTTAGCTTAGGATTGCTCAGTTTGGTGAGCACTTTGATGGTTTTCTTTTCCTGGCCACTAGTCTATTTATAAAGCATGATTTGTTTTTCTCAAAAAAAA]

[+] EMBL AU173949             [CCAGCTGCGGCAGATTGACTTCTCCGATCTGCCCAACAAGTCCGTCGATCTCTTCAGCGTCTCCAACGTGCAGGATGGCTCCAACAAGTGAGCTATTTCGAGCTTCCTGATGCCTAATTTTTGTTCGCGGATTTAGGGGGTTTTAGTGGGTTTTGTGTGATTGTTAGTGCTTCAAGGTGGATACAATTGTTTAATAATAATAAATTACGTGCCAGTTATAGATTAAATTCTCGTTTTCGTATTAGGAGGATGAATCTCTTGGATTGTTTTAATGAGGTTGAGTATTTTGTTTATGCTAGTGGCTATTGAGATGTTCAGAGTATGCTTCACTGCACAGTTTTAGCTTAGGATTGCTCAGTTTGGTGAGCACTTTGATGGTTTTCTTTTCCTGGCCACTAGTCTATTTATAAAGCATGATTTGTTTTTCTCAAAAAAAA]


>consensus_9938#2 CCAGCTGCGGCAGATTGACTTCTCCGATCTGCCCAACAAGTCCGTCGATCTCTTCAGCGT CTCCAACGTGCAGGATGGCTCCAACAAGTGAGCTATTTCGAGCTTCCTGATGCCTAATTT TTGTTCGCGGATTTAGGGGGTTTTAGTGGGTTTTGTGTGATTGTTAGTGCTTCAAGGTGG ATACAATTGTTTAATAATAATAAATTACGTGCCAGTTATAGATTAAATTCTCGTTTTCGT ATTAGGAGGATGAATCTCTTGGATTGTTTTAATGAGGTTGAGTATTTTGTTTATGCTAGT GGCTATTGAGATGTTCAGAGTATGCTTCACTGCACAGTTTTAGCTTAGGATTGCTCAGTT TGGTGAGCACTTTGATGGTTTTCTTTTCCTGGCCACTAGTCTATTTATAAAGCATGATTT GTTTTTCTCAAAAAAAA



consensusID : consensus_9938#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 181
fasta sequence
                              [CCGTGTGCATATTTGATTTGTACATCTTAATTTGGGCTTACTGCGTAGAGATGAATAANCTTGCTCCTTAATGAAGTGCTGGTCAATCCAAACCTGTGTGGTTGTACTTCTAGATANGCCAATCACCNTTATTGGTTCCCTCCAAATTTTGGGTATATGGATGTTCTTTGGCTTCAAAAAA]

[+] EMBL BM420783             [CCGTGTGCATATTTGATTTGTACATCTTAATTTGGGCTTACTGCGTAGAGATGAATAANCTTGCTCCTTAATGAAGTGCTGGTCAATCCAAACCTGTGTGGTTGTACTTCTAGATANGCCAATCACCNTTATTGGTTCCCTCCAAATTTTGGGTATATGGATGTTCTTTGGCTTCAAAAAA]


>consensus_9938#3 CCGTGTGCATATTTGATTTGTACATCTTAATTTGGGCTTACTGCGTAGAGATGAATAANC TTGCTCCTTAATGAAGTGCTGGTCAATCCAAACCTGTGTGGTTGTACTTCTAGATANGCC AATCACCNTTATTGGTTCCCTCCAAATTTTGGGTATATGGATGTTCTTTGGCTTCAAAAA A



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9938#0      GCATAGTGAGCTCTCCCGTGCCACCGACAGGTGGGCCCCACCCGCGCGGCGGAAGGTTCT 60
consensus_9938#1      ------------------------------------------------------------
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      ------------------------------------------------------------
                                                                                  

consensus_9938#0      AGGCTCTCCGGCGAAGGTTCTGGAAGGTTCGGGAGGAGGGGGGAGATGATTCTGTCGGCG 120
consensus_9938#1      ------------------------------------------------------------
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      ------------------------------------------------------------
                                                                                  

consensus_9938#0      CTCGCGACTTCGGTGGGGATCAACCTGGGGCTGACGGTGCTCCTCGCGGCGGCGTACACG 180
consensus_9938#1      ------------------------------------------------------------
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      ------------------------------------------------------------
                                                                                  

consensus_9938#0      CTGCTCCGGCGGCGCCCGCCGTACGTCGCCGTGTACTCGCCGCGGCGGCCGTACGCGCCG 240
consensus_9938#1      ------------------------------------------------------------
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      ------------------------------------------------------------
                                                                                  

consensus_9938#0      CCGGAGCCGTGGCTGCCCGCGGCGTGGCGCCGCACCGAGGCCGACGTCCACGCCGCCGCC 300
consensus_9938#1      ------------------------------------------------------------
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      ------------------------------------------------------------
                                                                                  

consensus_9938#0      GGGCTCGACGGCGTCGTCTTCCTCCGCATCTTCGTCTTCAGCATTAGGGTGTTCGCGGCG 360
consensus_9938#1      ------------------------------------------------------------
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      ------------------------------------------------------------
                                                                                  

consensus_9938#0      GCGGCGGTGGTGGGGGTGGGAGTGCTGATGCCGGTGAACTTCATGGGGGACCAGCTGCGG 420
consensus_9938#1      ------------------------------------------------------------
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      ------------------------------------------------------------
                                                                                  

consensus_9938#0      CAGATTGACTTCTCCGATCTGCCCAACAAGTCCGTCGATCTCTTCAGCGTCTCCAACGTG 480
consensus_9938#1      ------------------------------------------------------------
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      ------------------------------------------------------------
                                                                                  

consensus_9938#0      CAGGATGGCTCCAACAAATTGTGGCTCCACTTTTCGGCTGTGTACATCATAACTGGAATT 540
consensus_9938#1      ------------------------------------------------------------
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      ------------------------------------------------------------
                                                                                  

consensus_9938#0      ACATGCTACCTCCTTTATTATGAATACAAATATATTTCTGGCAAGAGGCTCGAATATTTT 600
consensus_9938#1      ------------------------------------------------------------
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      ------------------------------------------------------------
                                                                                  

consensus_9938#0      ATGACATCAAAACCACTACCTCAGCATTTCACAGTTCTAGTTCGAGCTATACCTGTAACC 660
consensus_9938#1      ------------------------------------------------------------
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      ------------------------------------------------------------
                                                                                  

consensus_9938#0      AATGGTGTGTCTGTGAGTGATGCTGTTGATAAGTTCTTCAAAGAGTACCATTCATCTACC 720
consensus_9938#1      ------------------------------------------------------------
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      ------------------------------------------------------------
                                                                                  

consensus_9938#0      TACTTGTCACACACTGTTGTTCATCAAACTGGCAAACTCCGCCGCCTTCTTAATGACGCT 780
consensus_9938#1      ------------------------------------------------------------
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      ------------------------------------------------------------
                                                                                  

consensus_9938#0      GAGAATATTTGCACAAAGCTTGCCAACTTGAAGTCTGTACGGCGTACTTCTGGAGATCCT 840
consensus_9938#1      ------------------------------------------------------------
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      ------------------------------------------------------------
                                                                                  

consensus_9938#0      CCAGGAAAATTTCTTGGAATATTTGGCAGAAATGATCTTGTTGGGAAATATCAGAAAAGG 900
consensus_9938#1      ------------------------------------------------------------
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      ------------------------------------------------------------
                                                                                  

consensus_9938#0      CTGGAGGACCTAGAAGAAAATGTTAGAATGGAACAATCAGACACTACTAGGAGCAGACAG 960
consensus_9938#1      ------------------------------------------------------------
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      ------------------------------------------------------------
                                                                                  

consensus_9938#0      GAAGTTCCCGCTGCTTTTGTGTCATTCAGATCTCGATATGGTGCTGCAAATGCTATTTAC 1020
consensus_9938#1      ------------------------------------------------------------
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      ------------------------------------------------------------
                                                                                  

consensus_9938#0      ATAAGACAATCAGACAAGCCTACTGAGTGGCAGACTGAGCATGCTCCTGATCCCCATGAC 1080
consensus_9938#1      ------------------------------------------------------------
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      ------------------------------------------------------------
                                                                                  

consensus_9938#0      GTTTATTGGCCTTTCTTTTCAACATCATTCATGGACAGATGGATATCCAAGTTTGTAGTC 1140
consensus_9938#1      ------------------------------------------------------------
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      ------------------------------------------------------------
                                                                                  

consensus_9938#0      TCTGTAGCTTCTATTCTCCTGATACTCGTCTTTCTCCTAGTTTCGGCATTTGTTCAAGGA 1200
consensus_9938#1      ------------------------------------------------------------
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      ------------------------------------------------------------
                                                                                  

consensus_9938#0      CTCACCTATATGGAACAGCTAGAGACATGGTTGCCTTTCCTGAGAAATATACTGGAAATA 1260
consensus_9938#1      ------------------------------------------------------------
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      ------------------------------------------------------------
                                                                                  

consensus_9938#0      GCTGTTGTCAGTCAGTTGGTTACAGGATATCTTCCCAGTGTCATTCTTCACTTTCTTTCC 1320
consensus_9938#1      ------------------------------------------------------------
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      ------------------------------------------------------------
                                                                                  

consensus_9938#0      TCTTATGTGCCCTCTATAATGAAGCTGTTTTCAACAATGCAAGGATTCATCTCTGTTAGT 1380
consensus_9938#1      ------------------------------------------------------------
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      ------------------------------------------------------------
                                                                                  

consensus_9938#0      GGGATTGAGAGAAGTGCTTGCAACAAAATGCTTCGGTTTACAATATGGAGTGTGTTCTTT 1440
consensus_9938#1      ------------------------------------------------------------
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      ------------------------------------------------------------
                                                                                  

consensus_9938#0      GCAAATGTTCTTACTGGCTCAGTACTTGGTCAACTCGAGATATTCCTTGATCCGAAGGAA 1500
consensus_9938#1      ------------------------------------------------------------
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      ------------------------------------------------------------
                                                                                  

consensus_9938#0      ATCCCTAAAAGGCTTGCAGTTGTTGTACCAGCACAGGCCTCTTTCTTTATTACATATGTT 1560
consensus_9938#1      ------------------------------------------------------------
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      ------------------------------------------------------------
                                                                                  

consensus_9938#0      GTGACATCTTGGACAAGTATAGCATCAGAACTTACTCAAACTGCTGCCCTTTTATTCCAT 1620
consensus_9938#1      ------------------------------------------------------------
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      ------------------------------------------------------------
                                                                                  

consensus_9938#0      TTGTGGGGTAGCTGTGCAAAATGCTGCAAGAGGGATGAGTCCAAACCTCCATCAATGCAT 1680
consensus_9938#1      ------------------------------------------------------------
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      ------------------------------------------------------------
                                                                                  

consensus_9938#0      TACCATAGTGAAATTCCTCGGGTTCTCCTGTTTGGACTTCTTGGGCTCACATACTTCATT 1740
consensus_9938#1      ------------------------------------------------------------
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      ------------------------------------------------------------
                                                                                  

consensus_9938#0      GTATCCCCACTTATCCTCCCATTTGTACTGGTTTACTTCTGCCTTGGCTACTTCATATAT 1800
consensus_9938#1      ------------------------------------------------------------
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      ------------------------------------------------------------
                                                                                  

consensus_9938#0      CGTAATCAGCTTTTTAATGTATCTTCACCCAAGTATGACACTGGTGGAAGATTCTGGCCC 1860
consensus_9938#1      --------------AGAGGACGAGACAAGGGGGTTTGACACTGGTGGAAGATTCTGGCCC 46
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      ------------------------------------------------------------
                                                                                  

consensus_9938#0      ATTGTGCACGGGGGAACAATATTTTCTCTGGTGCTGATGCATGTTATTGCAATTGGAGTA 1920
consensus_9938#1      ATTGTGCACGGGGGAACAATATTTTCTCTGGTGCTGATGCATGTTATTGCAATTGGAGTA 106
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      ------------------------------------------------------------
                                                                                  

consensus_9938#0      TTTGGATTGAAGAAACTTCCCC-TTGCATCAAGTTTGCTGGTACCTCTTCCAGTGCTGAC 1979
consensus_9938#1      TTTGGATTGAAGAAACTTCCCCCTTGCATCAAGTTTGCTGGTACCTCTTCCAGTGCTGAC 166
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      ------------------------------------------------------------
                                                                                  

consensus_9938#0      CCTTCTGTTCAATGAATACTGCCGGAACAGATTTTTACCGATCTTCGAAGCATATTCTAC 2039
consensus_9938#1      CCTTCTGTTCAATGAATACTGCCGGAACAGATTTTTACCGATCTTCGAAGCATATTCTAC 226
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      ------------------------------------------------------------
                                                                                  

consensus_9938#0      TGAGTCATTGATAAAGAAAGACAGAGAAGAAGAGAGCAAACCAGAAATGGCAGAATTCTT 2099
consensus_9938#1      TGAGTCATTGATAAAGAAAGCCAGAGAAGAAGAGAGCAAGCCAGAAATGGCAGAATTCTT 286
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      --------------------------------------------------------CCAG 4
                                                                                  

consensus_9938#0      CAGCAATCTTGTAAATGCGTACTGTGACCCGGCGATGAAACCTATCCAACACTCCTCGAA 2159
consensus_9938#1      CAGCAATCTTGTAAATGCGTACTGTGACCCGGCGATGAAACCTATCCAACACTCCTCGAA 346
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      CTGCGGCAGATTGACTTCTCCGATCTGCCCAACAAGTCCGTCGATCTCTTCAGCGTCTCC 64
                                                                                  

consensus_9938#0      TTCAGATGAACGCACTACCCCTCTATTGTCTTAGATCCAGATAAGTAATAGCTTGCAGCC 2219
consensus_9938#1      TTTAGATGAACGCACTACCCCTCTATTGTCTTAGATCCAGATAAGTAATAGCTTGCAGCC 406
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      AACGTGCAGGATGGCTCCAACAAGTGAGCTATTTCGAGCTTCCTGATGCCTAATTTTTGT 124
                                                                                  

consensus_9938#0      TTACTGTCATGGCGTGAAT-TTTGGTTTG-ACACCGATAATCAGGCATACAACAATACAC 2277
consensus_9938#1      TTACTGTCATGGCGTGAAT-TTTGGTTTG-ACACCGATAATCAGGCATACAACAATACAC 464
consensus_9938#3      ---------CCGTGTGCATATTTGATTTGTACATCTTAATTTGGGCTTACTGC---GTAG 48
consensus_9938#2      TCGCGGATTTAGGGGGTTTTAGTGGGTTTTGTGTGATTGTTAGTGCTTCAAGGTGGATAC 184
                                 * * *  *   **  **            *   ** *          * 

consensus_9938#0      CTGTGCTTCTTCTTGTGATGTTA---CTGTTGTAAAGCATTACTACAGACTTGACTGTGG 2334
consensus_9938#1      CTGTGCTTCTTCTTGTGATGTTA---CTGTTGTAAAGCATTACTACAGACTTGACTGTGG 521
consensus_9938#3      AGATGAATAANCTTGCT-CCTTA---ATGAAGTGCTG-GTCAATCCAAACCTG--TGTG- 100
consensus_9938#2      AATTGTTTAATAATAATAAATTACGTGCCAGTTATAGATTAAATTCTCGTTTTCGTATTA 244
                         **  *     *      ***         *   *  * * * *     *   * *  

consensus_9938#0      AGTTGTTGTGCATATTTGAT-TTGTACATCTTAATTTGTGCTTACTGCGTAGAGATGAAT 2393
consensus_9938#1      AGTTGTTGTGCATATTTGAT-TTGTACATCTTAATTTGTGCTTACTGCGTAGAGATGAAT 580
consensus_9938#3      ----GTTGTAC-TTCTAGAT-ANGCCAATCACCNTTATTGGTTCCCTCCAAATTTTGGGT 154
consensus_9938#2      GGAGGATGAATCTCTTGGATTGTTTTAATGAGGTTGAGTATTTTGTTTATGCTAGTGGCT 304
                          * **    *  * ***       **     *   *  **            **  *

consensus_9938#0      AATGCATTGCTCC---TTAATGAAGTGCTGTCAATGCAAACCTGTGTGGGTTGTACTTCT 2450
consensus_9938#1      AATGCATTGCTCC---TTAAAAAAAAAAAAAAA--------------------------- 610
consensus_9938#3      ATATGGATGTTCT---TTGGCTTCAAAAAA------------------------------ 181
consensus_9938#2      ATTGAGATGTTCAGAGTATGCTTCACTGCACAGTTTTAGCTTAGGATTGCTCAGTTTGGT 364
                      *      ** **    *                                           

consensus_9938#0      AGATATGTCAAATCACCTTTATTTGTTCCCTTCAAATTTTGTGTATATGGATGTTCTTTT 2510
consensus_9938#1      ------------------------------------------------------------
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      GAGCACTTTGATGGTTTTCTTTTCCTGGCCACTAGTCTATTTATAAAGCATGATTTGTTT 424
                                                                                  

consensus_9938#0      GCTTCAACCTATTCAGTAATGAGATTATTTGGCAGTTGGAATGATGTGATATTAGTACTG 2570
consensus_9938#1      ------------------------------------------------------------
consensus_9938#3      ------------------------------------------------------------
consensus_9938#2      TTCTCAAAAAAAA----------------------------------------------- 437
                                                                                  

consensus_9938#0      ATACATTATTATCAGTT 2587
consensus_9938#1      -----------------
consensus_9938#3      -----------------
consensus_9938#2      -----------------
                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)