cluster # 9940

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Oryza sativa
cluster # 9940 cluster # 9940 Sequences # 7 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9940#0 length = 1571 sequences # 1
consensus_9940#1 length = 1380 sequences # 2

consensus_9940#2 length = 1358 sequences # 3
consensus_9940#3 length = 282 sequences # 1

consensusID : consensus_9940#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1571
fasta sequence

                              [CCGCCGCCGCCTTCGATTCGATTCCGATCGAGTTGGAGAAGGCCGCCGCTGCCCAATGGCTCCGCTACCCTCGCCACCGCTGCTGGCCGAATCGCTCGCGACGCTGCGCACAGCCTCGCCGTCGCCGCCCATCCCCTGCTCTCCTCGCCGCACCCGGCCGTTGGTTTCAGCTAGGTTCGCAAGAACGGCCGGCCGCCGGAGCCGGAGCACGGGGGGAAGGAGAGACCTTAGGAGCTGTGCCTATGCGGCGGAAGCTGAGTACGGCAGCGCGGAGGATGAGGTCGCCGACGACTTCTACTCCGTTCTTGGCGTCATGCCAGATGCAACCCCTGAGGAAATCAAGAAAGCATACTACAGTTGCATGAAAGCGTGCCATCCCGACCTCAGTGGGGACAACCCCGAAGTAACAAACTTCTGCATGTTCATCAACGAGGTTTACACGGTGCTGAGTGATCCGGTGCAGCGTGCAGTGTATGATGAAATCCATGGGTATACAGCAACCGCGACCAACCCTTTCTTCGATGACAGTGCACCCAAGGATCAGGTGTTCGTTGATGAGTTTACCTGCATAGGATGCAAATATTGTGCCAATGTGTGCCCCAATGTATTTAGAATCGAGGAGGATTATGGGAGGTCAAGAGTATATTCCCAATCGGGTAGCACAGAGCTAATTCAGGAGGCCATTGATAGTTGCCCAGTCAACTGTATTCACTGGACTTCTGCTGCACAGCTTTCTCTCCTTGAGAATGAAATGCGGAGAATAGAGCGGGTGAATGTTGGGCTGATGAGTGCTGGGATGGGAGTTTCAGTTGATGTATTCCGATTGGCTAGCGTGCGTTGGGAAAAGAGACAGTCAAAAGTTTTGGAAAAAATTAGGACACGGATGACAAACAAAAAGTATTCAGATATAAGTAGTTCTTGGACTGATATCTGGGGATCCCCAACTCGATACCAAGGAAATGAAGAAGAAGGAACAGAGAGAGCGAAGAGAGCAGCTGCTGCTGCTAGGAGATGGCGAGAATACTCGAGAAAAGGCGCAGACAGGCCACCGGAGTACAAACTTCCAGAGGCAGCGGGCAATAAAGAATGAATTCCGGGGCAAATTTCCTTTGGCAGTAGTCTGGTAACCCCCAGGCATCGATGATGAACTGCAACATCTGCCAAAGGACAACTTGCCCAGCAATGCAGCTGCACATCTCATGGTCTCAACCTATTTCTATCCGTGTGCCACATTTAGTTTCATGTGTAGAGCGCACAGTTCACTGATCATTGTGCAGTGATATTTATACTCGCTCCTGCATGGTGAAAGGCAGCAAGGCTTTTTGCAGCTACACGGCCTTTCTCTGCTCCTCCTGCAAAGGCACACGGAGGCTGATAGGATATACTGTAGGACAATGCCTGCTCTCTAGATTGTGCCCACTTACAGGAACAAAGTCTGAAATGGAGAGATCATTGTAGTGCATATATCTCCAATCTTTTTAGGTCATGGGGCTACTTCCCCGTTTATTCTTAGCCTAGCTTCTTGCTGTCCAGACCATGTAAAGTTAAGTAGCATCAAATATCTGCTGAGA]

[+] EMBL AK108715             [CCGCCGCCGCCTTCGATTCGATTCCGATCGAGTTGGAGAAGGCCGCCGCTGCCCAATGGCTCCGCTACCCTCGCCACCGCTGCTGGCCGAATCGCTCGCGACGCTGCGCACAGCCTCGCCGTCGCCGCCCATCCCCTGCTCTCCTCGCCGCACCCGGCCGTTGGTTTCAGCTAGGTTCGCAAGAACGGCCGGCCGCCGGAGCCGGAGCACGGGGGGAAGGAGAGACCTTAGGAGCTGTGCCTATGCGGCGGAAGCTGAGTACGGCAGCGCGGAGGATGAGGTCGCCGACGACTTCTACTCCGTTCTTGGCGTCATGCCAGATGCAACCCCTGAGGAAATCAAGAAAGCATACTACAGTTGCATGAAAGCGTGCCATCCCGACCTCAGTGGGGACAACCCCGAAGTAACAAACTTCTGCATGTTCATCAACGAGGTTTACACGGTGCTGAGTGATCCGGTGCAGCGTGCAGTGTATGATGAAATCCATGGGTATACAGCAACCGCGACCAACCCTTTCTTCGATGACAGTGCACCCAAGGATCAGGTGTTCGTTGATGAGTTTACCTGCATAGGATGCAAATATTGTGCCAATGTGTGCCCCAATGTATTTAGAATCGAGGAGGATTATGGGAGGTCAAGAGTATATTCCCAATCGGGTAGCACAGAGCTAATTCAGGAGGCCATTGATAGTTGCCCAGTCAACTGTATTCACTGGACTTCTGCTGCACAGCTTTCTCTCCTTGAGAATGAAATGCGGAGAATAGAGCGGGTGAATGTTGGGCTGATGAGTGCTGGGATGGGAGTTTCAGTTGATGTATTCCGATTGGCTAGCGTGCGTTGGGAAAAGAGACAGTCAAAAGTTTTGGAAAAAATTAGGACACGGATGACAAACAAAAAGTATTCAGATATAAGTAGTTCTTGGACTGATATCTGGGGATCCCCAACTCGATACCAAGGAAATGAAGAAGAAGGAACAGAGAGAGCGAAGAGAGCAGCTGCTGCTGCTAGGAGATGGCGAGAATACTCGAGAAAAGGCGCAGACAGGCCACCGGAGTACAAACTTCCAGAGGCAGCGGGCAATAAAGAATGAATTCCGGGGCAAATTTCCTTTGGCAGTAGTCTGGTAACCCCCAGGCATCGATGATGAACTGCAACATCTGCCAAAGGACAACTTGCCCAGCAATGCAGCTGCACATCTCATGGTCTCAACCTATTTCTATCCGTGTGCCACATTTAGTTTCATGTGTAGAGCGCACAGTTCACTGATCATTGTGCAGTGATATTTATACTCGCTCCTGCATGGTGAAAGGCAGCAAGGCTTTTTGCAGCTACACGGCCTTTCTCTGCTCCTCCTGCAAAGGCACACGGAGGCTGATAGGATATACTGTAGGACAATGCCTGCTCTCTAGATTGTGCCCACTTACAGGAACAAAGTCTGAAATGGAGAGATCATTGTAGTGCATATATCTCCAATCTTTTTAGGTCATGGGGCTACTTCCCCGTTTATTCTTAGCCTAGCTTCTTGCTGTCCAGACCATGTAAAGTTAAGTAGCATCAAATATCTGCTGAGA]




>consensus_9940#0
CCGCCGCCGCCTTCGATTCGATTCCGATCGAGTTGGAGAAGGCCGCCGCTGCCCAATGGC
TCCGCTACCCTCGCCACCGCTGCTGGCCGAATCGCTCGCGACGCTGCGCACAGCCTCGCC
GTCGCCGCCCATCCCCTGCTCTCCTCGCCGCACCCGGCCGTTGGTTTCAGCTAGGTTCGC
AAGAACGGCCGGCCGCCGGAGCCGGAGCACGGGGGGAAGGAGAGACCTTAGGAGCTGTGC
CTATGCGGCGGAAGCTGAGTACGGCAGCGCGGAGGATGAGGTCGCCGACGACTTCTACTC
CGTTCTTGGCGTCATGCCAGATGCAACCCCTGAGGAAATCAAGAAAGCATACTACAGTTG
CATGAAAGCGTGCCATCCCGACCTCAGTGGGGACAACCCCGAAGTAACAAACTTCTGCAT
GTTCATCAACGAGGTTTACACGGTGCTGAGTGATCCGGTGCAGCGTGCAGTGTATGATGA
AATCCATGGGTATACAGCAACCGCGACCAACCCTTTCTTCGATGACAGTGCACCCAAGGA
TCAGGTGTTCGTTGATGAGTTTACCTGCATAGGATGCAAATATTGTGCCAATGTGTGCCC
CAATGTATTTAGAATCGAGGAGGATTATGGGAGGTCAAGAGTATATTCCCAATCGGGTAG
CACAGAGCTAATTCAGGAGGCCATTGATAGTTGCCCAGTCAACTGTATTCACTGGACTTC
TGCTGCACAGCTTTCTCTCCTTGAGAATGAAATGCGGAGAATAGAGCGGGTGAATGTTGG
GCTGATGAGTGCTGGGATGGGAGTTTCAGTTGATGTATTCCGATTGGCTAGCGTGCGTTG
GGAAAAGAGACAGTCAAAAGTTTTGGAAAAAATTAGGACACGGATGACAAACAAAAAGTA
TTCAGATATAAGTAGTTCTTGGACTGATATCTGGGGATCCCCAACTCGATACCAAGGAAA
TGAAGAAGAAGGAACAGAGAGAGCGAAGAGAGCAGCTGCTGCTGCTAGGAGATGGCGAGA
ATACTCGAGAAAAGGCGCAGACAGGCCACCGGAGTACAAACTTCCAGAGGCAGCGGGCAA
TAAAGAATGAATTCCGGGGCAAATTTCCTTTGGCAGTAGTCTGGTAACCCCCAGGCATCG
ATGATGAACTGCAACATCTGCCAAAGGACAACTTGCCCAGCAATGCAGCTGCACATCTCA
TGGTCTCAACCTATTTCTATCCGTGTGCCACATTTAGTTTCATGTGTAGAGCGCACAGTT
CACTGATCATTGTGCAGTGATATTTATACTCGCTCCTGCATGGTGAAAGGCAGCAAGGCT
TTTTGCAGCTACACGGCCTTTCTCTGCTCCTCCTGCAAAGGCACACGGAGGCTGATAGGA
TATACTGTAGGACAATGCCTGCTCTCTAGATTGTGCCCACTTACAGGAACAAAGTCTGAA
ATGGAGAGATCATTGTAGTGCATATATCTCCAATCTTTTTAGGTCATGGGGCTACTTCCC
CGTTTATTCTTAGCCTAGCTTCTTGCTGTCCAGACCATGTAAAGTTAAGTAGCATCAAAT
ATCTGCTGAGA

consensusID : consensus_9940#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1380
fasta sequence

                              [CGCCGCCGCCGCCGCCTTCGATTCGATTCCGATCGAGTTGGAGAAGGCCGCCGCTGCCCAATGGCTCCGCTACCCTCGCCACCGCTGCTGGCCGAATCGCTCGCGACGCTGCGCACAGCCTCGCCGTCGCCGCCCATCCCCTGCTCTCCTCGCCGCACCCGGCCGTTGGTTTCAGCTAGGTTCGCAAGAACGGCCGGCCGCCGGAGCCGGAGCACGGGGGGAAGGAGAGACCTTAGGAGCTGTGCCTATGCGGCGGAAGCTGAGTACGGCAGCGCGGAGGATGAGGTCGCCGACGACTTCTACTCCGTTCTTGGCGTCATGCCAGATGCAACCCCTGAGGAAATCAAGAAAGCATACTACAGTTGCATGAAAGCGTGCCATCCCGACCTCAGTGGGGACAACCCCGAAGTAACAAACTTCTGCATGTTCATCAACGAGGTTTACACGGTGCTGAGTGATCCGGTGCAGCGTGCAGTGTATGATGAAATCCATGGGTATACAGCAACCGCGACCAACCCTTTCTTCGATGACAGTGCACCCAAGGATCAGGTGTTCGTTGATGAGTTTACCTGCATAGGATGCAAATATTGTGCCAATGTGTGCCCCAATGTATTTAGAATCGAGGAGGATTATGGGAGGTCAAGAGTATATTCCCAATCGGGTAGCACAGAGCTAATTCAGGAGGCCATTGATAGTTGCCCAGTCAACTGTATTCACTGGACTCCTGCTGCACAGCTTTCTCTCCTTGAGAATGAAATGCGGAGAATAGAGCGGGTGAATGTTGGGCTGATGAGTGCTGGGATGGGAGTTTCAGTTGATGTATTCCGATTGGCTAGCGTGCGTTGGGAAAAGAGACAGTCAAAAGTTTTGGAAAAAATTAGGACACGGATGACAAACAAAAAGTATTCAGATATAAGTAGTTCTTGGACTGATATCTGGGGATCCCCAACTCGATACCAAGGAAATGATTTGCTGATGATATCAGAAGAAGAAGGAACAGAGAGAGCGAAGAGAGCAGCTGCTGCTGCTAGGAGATGGCGAGAATACTCGAGAAAAGGCGCAGACAGGCCACCGGAGTACAAACTTCCAGAGGCAGCGGGCAATAAAGAGTAATAGCAGAACAAAGAAATATTTCTATCCTGCTTACGTTATCTGATAGCATTTCGTCACCCGTACATATAGCCTTATTGTTTGAAGAGAGCTGACATGTAGATTGCTCTCTCCCAATTCCTCATTTTTCATTTGTAATATATAGCTGATAACAATAACCTGTAGAATACAAACGTCAATAGTTAAACATTCGGAATGTAAAAGATGAATATGTGCACATTCTCCTTCAACAATGGTATACATCCTGAAGATCAAAAAAAAAAAAAAAAA]

[+] EMBL AK064168             [CGCCGCCGCCGCCGCCTTCGATTCGATTCCGATCGAGTTGGAGAAGGCCGCCGCTGCCCAATGGCTCCGCTACCCTCGCCACCGCTGCTGGCCGAATCGCTCGCGACGCTGCGCACAGCCTCGCCGTCGCCGCCCATCCCCTGCTCTCCTCGCCGCACCCGGCCGTTGGTTTCAGCTAGGTTCGCAAGAACGGCCGGCCGCCGGAGCCGGAGCACGGGGGGAAGGAGAGACCTTAGGAGCTGTGCCTATGCGGCGGAAGCTGAGTACGGCAGCGCGGAGGATGAGGTCGCCGACGACTTCTACTCCGTTCTTGGCGTCATGCCAGATGCAACCCCTGAGGAAATCAAGAAAGCATACTACAGTTGCATGAAAGCGTGCCATCCCGACCTCAGTGGGGACAACCCCGAAGTAACAAACTTCTGCATGTTCATCAACGAGGTTTACACGGTGCTGAGTGATCCGGTGCAGCGTGCAGTGTATGATGAAATCCATGGGTATACAGCAACCGCGACCAACCCTTTCTTCGATGACAGTGCACCCAAGGATCAGGTGTTCGTTGATGAGTTTACCTGCATAGGATGCAAATATTGTGCCAATGTGTGCCCCAATGTATTTAGAATCGAGGAGGATTATGGGAGGTCAAGAGTATATTCCCAATCGGGTAGCACAGAGCTAATTCAGGAGGCCATTGATAGTTGCCCAGTCAACTGTATTCACTGGACTCCTGCTGCACAGCTTTCTCTCCTTGAGAATGAAATGCGGAGAATAGAGCGGGTGAATGTTGGGCTGATGAGTGCTGGGATGGGAGTTTCAGTTGATGTATTCCGATTGGCTAGCGTGCGTTGGGAAAAGAGACAGTCAAAAGTTTTGGAAAAAATTAGGACACGGATGACAAACAAAAAGTATTCAGATATAAGTAGTTCTTGGACTGATATCTGGGGATCCCCAACTCGATACCAAGGAAATGATTTGCTGATGATATCAGAAGAAGAAGGAACAGAGAGAGCGAAGAGAGCAGCTGCTGCTGCTAGGAGATGGCGAGAATACTCGAGAAAAGGCGCAGACAGGCCACCGGAGTACAAACTTCCAGAGGCAGCGGGCAATAAAGAGTAATAGCAGAACAAAGAAATATTTCTATCCTGCTTACGTTATCTGATAGCATTTCGTCACCCGTACATATAGCCTTATTGTTTGAAGAGAGCTGACATGTAGATTGCTCTCTCCCAATTCCTCATTTTTCATTTGTAATATATAGCTGATAACAATAACCTGTAGAATACAAACGTCAATAGTTAAACATTCGGAATGTAAAAGATGAATATGTGCACATTCTCCTTCAACAATGGTATACAT                           ]
[+] EMBL AW069968             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ggcagGTACATATAGCCTTATTGTTTGAAGAGAGCTGACATGTAGATTGCTCTCTCCCAATTCCTCATTTTTCATTTGTAATATATAGCTGATAACAATAACCTGTAGAATACAAACGTCAATAGTTAAACATTCGGAATGTAAAAGATGAATATGTGCACATTCTCCTTCAACAATGGTATACATCCTGAAGATCAAAAAAAAAAAAAAAAA]




>consensus_9940#1
CGCCGCCGCCGCCGCCTTCGATTCGATTCCGATCGAGTTGGAGAAGGCCGCCGCTGCCCA
ATGGCTCCGCTACCCTCGCCACCGCTGCTGGCCGAATCGCTCGCGACGCTGCGCACAGCC
TCGCCGTCGCCGCCCATCCCCTGCTCTCCTCGCCGCACCCGGCCGTTGGTTTCAGCTAGG
TTCGCAAGAACGGCCGGCCGCCGGAGCCGGAGCACGGGGGGAAGGAGAGACCTTAGGAGC
TGTGCCTATGCGGCGGAAGCTGAGTACGGCAGCGCGGAGGATGAGGTCGCCGACGACTTC
TACTCCGTTCTTGGCGTCATGCCAGATGCAACCCCTGAGGAAATCAAGAAAGCATACTAC
AGTTGCATGAAAGCGTGCCATCCCGACCTCAGTGGGGACAACCCCGAAGTAACAAACTTC
TGCATGTTCATCAACGAGGTTTACACGGTGCTGAGTGATCCGGTGCAGCGTGCAGTGTAT
GATGAAATCCATGGGTATACAGCAACCGCGACCAACCCTTTCTTCGATGACAGTGCACCC
AAGGATCAGGTGTTCGTTGATGAGTTTACCTGCATAGGATGCAAATATTGTGCCAATGTG
TGCCCCAATGTATTTAGAATCGAGGAGGATTATGGGAGGTCAAGAGTATATTCCCAATCG
GGTAGCACAGAGCTAATTCAGGAGGCCATTGATAGTTGCCCAGTCAACTGTATTCACTGG
ACTCCTGCTGCACAGCTTTCTCTCCTTGAGAATGAAATGCGGAGAATAGAGCGGGTGAAT
GTTGGGCTGATGAGTGCTGGGATGGGAGTTTCAGTTGATGTATTCCGATTGGCTAGCGTG
CGTTGGGAAAAGAGACAGTCAAAAGTTTTGGAAAAAATTAGGACACGGATGACAAACAAA
AAGTATTCAGATATAAGTAGTTCTTGGACTGATATCTGGGGATCCCCAACTCGATACCAA
GGAAATGATTTGCTGATGATATCAGAAGAAGAAGGAACAGAGAGAGCGAAGAGAGCAGCT
GCTGCTGCTAGGAGATGGCGAGAATACTCGAGAAAAGGCGCAGACAGGCCACCGGAGTAC
AAACTTCCAGAGGCAGCGGGCAATAAAGAGTAATAGCAGAACAAAGAAATATTTCTATCC
TGCTTACGTTATCTGATAGCATTTCGTCACCCGTACATATAGCCTTATTGTTTGAAGAGA
GCTGACATGTAGATTGCTCTCTCCCAATTCCTCATTTTTCATTTGTAATATATAGCTGAT
AACAATAACCTGTAGAATACAAACGTCAATAGTTAAACATTCGGAATGTAAAAGATGAAT
ATGTGCACATTCTCCTTCAACAATGGTATACATCCTGAAGATCAAAAAAAAAAAAAAAAA

consensusID : consensus_9940#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1358
fasta sequence

                              [CCGCCGCCGCCGCCGCCTTCGATTCGATTCCGATCGAGTTGGAGAAGGCCGCCGCTGCCCAATGGCTCCGCTACCCTCGCCACCGCTGCTGGCCGAATCGCTCGCGACGCTGCGCACAGCCTCGCCGTCGCCGCCCATCCCCTGCTCTCCTCGCCGCACCCGGCCGTTGGTTTCAGCTAGGTTCGCAAGAACGGCCGGCCGCCGGAGCCGGAGCACGGGGGGAAGGAGAGACCTTAGGAGCTGTGCCTATGCGGCGGAAGCTGAGTACGGCAGCGCGGAGGATGAGGTCGCCGACGACTTCTACTCCGTTCTTGGCGTCATGCCAGATGCAACCCCTGAGGAAATCAAGAAAGCATACTACAGTTGCATGAAAGCGTGCCATCCCGACCTCAGTGGGGACAACCCCGAAGTAACAAACTTCTGCATGTTCATCAACGAGGTTTACACGGTGCTGAGTGATCCGGTGCAGCGTGCAGTGTATGATGAAATCCATGGGTATACAGCAACCGCGACCAACCCTTTCTTCGATGACAGTGCACCCAAGGATCAGGTGTTCGTTGATGAGTTTACCTGCATAGGATGCAAATATTGTGCCAATGTGTGCCCCAATGTATTTAGAATCGAGGAGGATTATGGGAGGTCAAGAGTATATTCCCAATCGGGTAGCACAGAGCTAATTCAGGAGGCCATTGATAGTTGCCCAGTCAACTGTACTCACTGGACTTCTGCTGCACAGCTTTCTCTCCTTGAGAATGAAATGCGGAGAATAGAGCGGGTGAATGTTGGGCTGATGAGTGCTGGGATGGGAGTTTCAGTTGATGTATTCCGATTGGTAAATTTGCTAGCGTGCGTTGGGAAAAGAGACAGTCAAAAGTTTTGGAAAAAATTAGGACACGGATGACAAACAAAAAGTATTCAGATATAAGTAGTTCTTGGACTGATATCTGGGGATCCCCAACTCGATACCA-AGGAAATGAAGAAGAAGGAACAGAGAGAGCGAAGAGAGCAGCTGCTGCTGCTAGGAGATGGCGAGAATACTCGAGAAAAGGCGCAGACAGGCCACCGGAGTACAAACTTCCAGAGGCAGCGGGCAATAAAGAGTAATAGCAGAACAAAGAAATATTTCTATCCTGCTTACGTTATCTGATAGCA-TTTCGTCACCTGTACATATAGCCTTATTGTTTGAAGAGAGCTGACATGTAGATTGCTCTCTCCCAATTCCTCA-TTTTTCATTTGTAATATATAGCTGATAACAATAACCTGTAGAATACAAACGTCAATAGTTAAACATTCGGAATGTAAAAGATGAATATGTGCACA-TTCTCCTTCAACAATGGTATACATCCTGAAAAAAAAAA]

[+] EMBL AK062298             [CCGCCGCCGCCGCCGCCTTCGATTCGATTCCGATCGAGTTGGAGAAGGCCGCCGCTGCCCAATGGCTCCGCTACCCTCGCCACCGCTGCTGGCCGAATCGCTCGCGACGCTGCGCACAGCCTCGCCGTCGCCGCCCATCCCCTGCTCTCCTCGCCGCACCCGGCCGTTGGTTTCAGCTAGGTTCGCAAGAACGGCCGGCCGCCGGAGCCGGAGCACGGGGGGAAGGAGAGACCTTAGGAGCTGTGCCTATGCGGCGGAAGCTGAGTACGGCAGCGCGGAGGATGAGGTCGCCGACGACTTCTACTCCGTTCTTGGCGTCATGCCAGATGCAACCCCTGAGGAAATCAAGAAAGCATACTACAGTTGCATGAAAGCGTGCCATCCCGACCTCAGTGGGGACAACCCCGAAGTAACAAACTTCTGCATGTTCATCAACGAGGTTTACACGGTGCTGAGTGATCCGGTGCAGCGTGCAGTGTATGATGAAATCCATGGGTATACAGCAACCGCGACCAACCCTTTCTTCGATGACAGTGCACCCAAGGATCAGGTGTTCGTTGATGAGTTTACCTGCATAGGATGCAAATATTGTGCCAATGTGTGCCCCAATGTATTTAGAATCGAGGAGGATTATGGGAGGTCAAGAGTATATTCCCAATCGGGTAGCACAGAGCTAATTCAGGAGGCCATTGATAGTTGCCCAGTCAACTGTACTCACTGGACTTCTGCTGCACAGCTTTCTCTCCTTGAGAATGAAATGCGGAGAATAGAGCGGGTGAATGTTGGGCTGATGAGTGCTGGGATGGGAGTTTCAGTTGATGTATTCCGATTGGTAAATTTGCTAGCGTGCGTTGGGAAAAGAGACAGTCAAAAGTTTTGGAAAAAATTAGGACACGGATGACAAACAAAAAGTATTCAGATATAAGTAGTTCTTGGACTGATATCTGGGGATCCCCAACTCGATACCA AGGAAATGAAGAAGAAGGAACAGAGAGAGCGAAGAGAGCAGCTGCTGCTGCTAGGAGATGGCGAGAATACTCGAGAAAAGGCGCAGACAGGCCACCGGAGTACAAACTTCCAGAGGCAGCGGGCAATAAAGAGTAATAGCAGAACAAAGAAATATTTCTATCCTGCTTACGTTATCTGATAGCA TTTCGTCACCTGTACATATAGCCTTATTGTTTGAAGAGAGCTGACATGTAGATTGCTCTCTCCCAATTCCTCA TTTTTCATTTGTAATATATAGCTGATAACAATAACCTGTAGAATACAAACGTCAATAGTTAAACATTCGGAATGTAAAAGATGAATATGTGCACA TTCTCCTTCAACAATGGT                    ]
[+] EMBL BI810807             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CTGATATCTGGGGATCCCCCACTCGATACCACAGGAAATGAAGAAGAAGGAACCGAGAGAGCGAAGAGACCAGCTGCT CTGCTAGGAGATGGCGAGAATACTCGAGAAAAGGC CCGACAGGCCCCCGGAGTACCAACTTCCAGA GCA CGGCCCATAAAGAGTAATAGCAGAACCAAGAAATATTTCTATCCTGCTTACGTTATCTGATAGCACTTTCGTCACCTGTACATATA CCTTATTGTTTGAAGAGAGCTGACATGTAGATTGCTCTCTCCCCATTCCTCACTTTTTCATTTGTAATATATAGCTGAT ACCAT ACCTGTAGAATAC AACGTCAATAGTTAAACATTCGGAATGTAAAAGATGAATATGTGCACACTTCTCCTTCAACCATGGTATACATCCTGAAAAAAAAAA]
[+] EMBL BE228881             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GAG GCAGCTGCTGCTGCTAGGAGATGGCGAGAATACTCNAGAAAAGGCGCAGACAGGCCACCGGAGTACAAACTTCCAGAGGCAGCGGGCAATAAANAGTNTTANCAGAACAAANAAATATTTCTATCCTGCTTACGTTATCTGATAGCA TTTCGTCACCTGTACATATAGCCTTATTGTTTGAANANAACTGACATGTNNATTGCTCTCTCCCAATTCCTCA TTTTTCATTTGTAATATATAGCTGATAACAATAACCTGTNGAATACAAACGTCAATAGTTAAACAT                                                                    ]




>consensus_9940#2
CCGCCGCCGCCGCCGCCTTCGATTCGATTCCGATCGAGTTGGAGAAGGCCGCCGCTGCCC
AATGGCTCCGCTACCCTCGCCACCGCTGCTGGCCGAATCGCTCGCGACGCTGCGCACAGC
CTCGCCGTCGCCGCCCATCCCCTGCTCTCCTCGCCGCACCCGGCCGTTGGTTTCAGCTAG
GTTCGCAAGAACGGCCGGCCGCCGGAGCCGGAGCACGGGGGGAAGGAGAGACCTTAGGAG
CTGTGCCTATGCGGCGGAAGCTGAGTACGGCAGCGCGGAGGATGAGGTCGCCGACGACTT
CTACTCCGTTCTTGGCGTCATGCCAGATGCAACCCCTGAGGAAATCAAGAAAGCATACTA
CAGTTGCATGAAAGCGTGCCATCCCGACCTCAGTGGGGACAACCCCGAAGTAACAAACTT
CTGCATGTTCATCAACGAGGTTTACACGGTGCTGAGTGATCCGGTGCAGCGTGCAGTGTA
TGATGAAATCCATGGGTATACAGCAACCGCGACCAACCCTTTCTTCGATGACAGTGCACC
CAAGGATCAGGTGTTCGTTGATGAGTTTACCTGCATAGGATGCAAATATTGTGCCAATGT
GTGCCCCAATGTATTTAGAATCGAGGAGGATTATGGGAGGTCAAGAGTATATTCCCAATC
GGGTAGCACAGAGCTAATTCAGGAGGCCATTGATAGTTGCCCAGTCAACTGTACTCACTG
GACTTCTGCTGCACAGCTTTCTCTCCTTGAGAATGAAATGCGGAGAATAGAGCGGGTGAA
TGTTGGGCTGATGAGTGCTGGGATGGGAGTTTCAGTTGATGTATTCCGATTGGTAAATTT
GCTAGCGTGCGTTGGGAAAAGAGACAGTCAAAAGTTTTGGAAAAAATTAGGACACGGATG
ACAAACAAAAAGTATTCAGATATAAGTAGTTCTTGGACTGATATCTGGGGATCCCCAACT
CGATACCAAGGAAATGAAGAAGAAGGAACAGAGAGAGCGAAGAGAGCAGCTGCTGCTGCT
AGGAGATGGCGAGAATACTCGAGAAAAGGCGCAGACAGGCCACCGGAGTACAAACTTCCA
GAGGCAGCGGGCAATAAAGAGTAATAGCAGAACAAAGAAATATTTCTATCCTGCTTACGT
TATCTGATAGCATTTCGTCACCTGTACATATAGCCTTATTGTTTGAAGAGAGCTGACATG
TAGATTGCTCTCTCCCAATTCCTCATTTTTCATTTGTAATATATAGCTGATAACAATAAC
CTGTAGAATACAAACGTCAATAGTTAAACATTCGGAATGTAAAAGATGAATATGTGCACA
TTCTCCTTCAACAATGGTATACATCCTGAAAAAAAAAA

consensusID : consensus_9940#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 282
fasta sequence

                              [TNNNGCAAAAAAAANGGCGCNCACCNGCCACCGNAGTACAATCTTCCAAAAGGCAGCGGGGCAATAAAAAAGTATNTACCCCAACAAANAAATATTTCTATCCTGCTTACNTTATCTGATANCATTTCGTCACCTGTACATATANCCTTATTGTTTGAAAAAAGCTGACATNTAAATTGCTCTCTCCCAATNCCCCATTTTNCATTTGTAATATATANCTGATAACAATAACCTGTAAAATACAAACNTCAATANTTAAACATTCGGAATGTANAAAATAAA]

[+] EMBL AA751977             [TNNNGCAAAAAAAANGGCGCNCACCNGCCACCGNAGTACAATCTTCCAAAAGGCAGCGGGGCAATAAAAAAGTATNTACCCCAACAAANAAATATTTCTATCCTGCTTACNTTATCTGATANCATTTCGTCACCTGTACATATANCCTTATTGTTTGAAAAAAGCTGACATNTAAATTGCTCTCTCCCAATNCCCCATTTTNCATTTGTAATATATANCTGATAACAATAACCTGTAAAATACAAACNTCAATANTTAAACATTCGGAATGTANAAAATAAA]




>consensus_9940#3
TNNNGCAAAAAAAANGGCGCNCACCNGCCACCGNAGTACAATCTTCCAAAAGGCAGCGGG
GCAATAAAAAAGTATNTACCCCAACAAANAAATATTTCTATCCTGCTTACNTTATCTGAT
ANCATTTCGTCACCTGTACATATANCCTTATTGTTTGAAAAAAGCTGACATNTAAATTGC
TCTCTCCCAATNCCCCATTTTNCATTTGTAATATATANCTGATAACAATAACCTGTAAAA
TACAAACNTCAATANTTAAACATTCGGAATGTANAAAATAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9940#1      CGCCGCCGCCGCCGCCTTCGATTCGATTCCGATCGAGTTGGAGAAGGCCGCCGCTGCCCA 60
consensus_9940#3      ------------------------------------------------------------
consensus_9940#2      ---------CCGCCGCCGCCGCCGCCTTCGATTCGATTCCGATCGAGTTGGAGAAGGCCG 51
consensus_9940#0      -----------------------CCGCCGCCGCCTTCGATTCGATTCCGATCGAGTTGGA 37
                                                                                  

consensus_9940#1      ATGGCTCCGCTACCCTCGCCACCGCTGCTGGCCGAATCGCTCGCGACGCTGCGCACAGCC 120
consensus_9940#3      ------------------------------------------------------------
consensus_9940#2      CCGCTGCCCAATGGCTCCGCTACCCTCGCCACCGCTGCTGGCCGAATCGCTCGCGACGCT 111
consensus_9940#0      GAAGGCCGCCGCTGCCCAATGGCTCCGCTACCCTCGCCACCGCTGCTGGCCGAATCGCTC 97
                                                                                  

consensus_9940#1      TCGCCGTCGCCGCCCATCCCCTGCTCTCCTCGCCGCACCCGGCCGTTGGTTTCAGCTAGG 180
consensus_9940#3      ------------------------------------------------------------
consensus_9940#2      GCGCACAGCCTCGCCGTCGCCGCCCATCCCCTGCTCTCCTCGCCGCACCCGGCCGTTGGT 171
consensus_9940#0      GCGACGCTGCGCACAGCCTCGCCGTCGCCGCCCATCCCCTGCTCTCCTCGCCGCACCCGG 157
                                                                                  

consensus_9940#1      TTCGCAAGAACGGCCGGCCGCCGGAGCCGGAGCACGGGGGGAAGGAGAGACCTTAGGAGC 240
consensus_9940#3      ------------------------------------------------------------
consensus_9940#2      TTCAGCTAGGTTCGCAAGAACGGCCGGCCGCCGGAGCCGGAGCACGGGGGGAAGGAGAGA 231
consensus_9940#0      CCGTTGGTTTCAGCTAGGTTCGCAAGAACGGCCGGCCGCCGGAGCCGGAGCACGGGGGGA 217
                                                                                  

consensus_9940#1      TGTGCCTATGCGGCGGAAGCTGAGTACGGCAGCGCGGAGGATGAGGTCGCCGACGACTTC 300
consensus_9940#3      ------------------------------------------------------------
consensus_9940#2      CCTTAGGAGCTGTGCCTATGCGGCGGAAGCTGAGTACGGCAGCGCGGAGGATGAGGTCGC 291
consensus_9940#0      AGGAGAGACCTTAGGAGCTGTGCCTATGCGGCGGAAGCTGAGTACGGCAGCGCGGAGGAT 277
                                                                                  

consensus_9940#1      TACTCCGTTCTTGGCGTCATGCCAGATGCAACCCCTGAGGAAATCAAGAAAGCATACTAC 360
consensus_9940#3      ------------------------------------------------------------
consensus_9940#2      CGACGACTTCTACTCCGTTCTTGGCGTCATGCCAGATGCAACCCCTGAGGAAATCAAGAA 351
consensus_9940#0      GAGGTCGCCGACGACTTCTACTCCGTTCTTGGCGTCATGCCAGATGCAACCCCTGAGGAA 337
                                                                                  

consensus_9940#1      AGTTGCATGAAAGCGTGCCATCCCGACCTCAGTGGGGACAACCCCGAAGTAACAAACTTC 420
consensus_9940#3      ------------------------------------------------------------
consensus_9940#2      AGCATACTACAGTTGCATGAAAGCGTGCCATCCCGACCTCAGTGGGGACAACCCCGAAGT 411
consensus_9940#0      ATCAAGAAAGCATACTACAGTTGCATGAAAGCGTGCCATCCCGACCTCAGTGGGGACAAC 397
                                                                                  

consensus_9940#1      TGCATGTTCATCAACGAGGTTTACACGGTGCTGAGTGATCCGGTGCAGCGTGCAGTGTAT 480
consensus_9940#3      ------------------------------------------------------------
consensus_9940#2      AACAAACTTCTGCATGTTCATCAACGAGGTTTACACGGTGCTGAGTGATCCGGTGCAGCG 471
consensus_9940#0      CCCGAAGTAACAAACTTCTGCATGTTCATCAACGAGGTTTACACGGTGCTGAGTGATCCG 457
                                                                                  

consensus_9940#1      GATGAAATCCATGGGTATACAGCAACCGCGACCAACCCTTTCTTCGATGACAGTGCACCC 540
consensus_9940#3      ------------------------------------------------------------
consensus_9940#2      TGCAGTGTATGATGAAATCCATGGGTATACAGCAACCGCGACCAACCCTTTCTTCGATGA 531
consensus_9940#0      GTGCAGCGTGCAGTGTATGATGAAATCCATGGGTATACAGCAACCGCGACCAACCCTTTC 517
                                                                                  

consensus_9940#1      AAGGATCAGGTGTTCGTTGATGAGTTTACCTGCATAGGATGCAAATATTGTGCCAATGTG 600
consensus_9940#3      ------------------------------------------------------------
consensus_9940#2      CAGTGCACCCAAGGATCAGGTGTTCGTTGATGAGTTTACCTGCATAGGATGCAAATATTG 591
consensus_9940#0      TTCGATGACAGTGCACCCAAGGATCAGGTGTTCGTTGATGAGTTTACCTGCATAGGATGC 577
                                                                                  

consensus_9940#1      TGCCCCAATGTATTTAGAATCGAGGAGGATTATGGGAGGTCAAGAGTATATTCCCAATCG 660
consensus_9940#3      ------------------------------------------------------------
consensus_9940#2      TGCCAATGTGTGCCCCAATGTATTTAGAATCGAGGAGGATTATGGGAGGTCAAGAGTATA 651
consensus_9940#0      AAATATTGTGCCAATGTGTGCCCCAATGTATTTAGAATCGAGGAGGATTATGGGAGGTCA 637
                                                                                  

consensus_9940#1      GGTAGCACAGAGCTAATTCAGGAGGCCATTGATAGTTGCCCAGTCAACTGTATTCACTGG 720
consensus_9940#3      ------------------------------------------------------------
consensus_9940#2      TTCCCAATCGGGTAGCACAGAGCTAATTCAGGAGGCCATTGATAGTTGCCCAGTCAACTG 711
consensus_9940#0      AGAGTATATTCCCAATCGGGTAGCACAGAGCTAATTCAGGAGGCCATTGATAGTTGCCCA 697
                                                                                  

consensus_9940#1      ACTCCTGCTGCACAGCTTTCTCTCCTTGAGAATGAAATGCGGAGAATAGAGCGGGTGAAT 780
consensus_9940#3      ------------------------------------------------------------
consensus_9940#2      TACTCACTGGACTTCTGCTGCACAGCTTTCTCTCCTTGAGAATGAAATGCGGAGAATAGA 771
consensus_9940#0      GTCAACTGTATTCACTGGACTTCTGCTGCACAGCTTTCTCTCCTTGAGAATGAAATGCGG 757
                                                                                  

consensus_9940#1      GTTGGGCTGATGAGTGCTGGGATGGGAGTTTCAGTTGATGTATTCCGATTGGCTAGCGTG 840
consensus_9940#3      ------------------------------------------------------------
consensus_9940#2      GCGGGTGAATGTTGGGCTGATGAGTGCTGGGATGGGAGTTTCAGTTGATGTATTCCGATT 831
consensus_9940#0      AGAATAGAGCGGGTGAATGTTGGGCTGATGAGTGCTGGGATGGGAGTTTCAGTTGATGTA 817
                                                                                  

consensus_9940#1      CGTTGGGAAAAGAGACAGTCAAAAGTTTTGGAAAAAATTAGGACACGGATGACAAACAAA 900
consensus_9940#3      ------------------------------------------------------------
consensus_9940#2      GGTAAATTTGCTAGCGTGCGTTGGGAAAAGAGACAGTCAAAAGTTTTGGAAAAAATTAGG 891
consensus_9940#0      TTCCGATTGGCTAGCGTGCGTTGGGAAAAGAGACAGTCAAAAGTTTTGGAAAAAATTAGG 877
                                                                                  

consensus_9940#1      AAGTATTCAGATATAAGTAGTTCTTGGACTGATATCTGGGGATCCCCAACTCGATACCAA 960
consensus_9940#3      ------------------------------------------------------------
consensus_9940#2      ACACGGATGACAAACAAAAAGTATTCAGATATAAGTAGTTCTTGGACTGATATCTGGGGA 951
consensus_9940#0      ACACGGATGACAAACAAAAAGTATTCAGATATAAGTAGTTCTTGGACTGATATCTGGGGA 937
                                                                                  

consensus_9940#1      GGAAATGATTTGCTGATGATATCAGAAGAAGAAGGAACAGAGAGAGCGAAGAGAGCAGCT 1020
consensus_9940#3      ------------------------------------------------------------
consensus_9940#2      TCCCCAACTCGATACCAAGGAAATGAAGAAGAAGGAACAGAGAGAGCGAAGAGAGCAGCT 1011
consensus_9940#0      TCCCCAACTCGATACCAAGGAAATGAAGAAGAAGGAACAGAGAGAGCGAAGAGAGCAGCT 997
                                                                                  

consensus_9940#1      GCTGCTGCTAGGAGATGGCGAGAATACTCGAGAAAAGGCGCAGACAGGCCACCGGAGTAC 1080
consensus_9940#3      ---------------------TNNNGCAAAAAAAANGGCGCNCACCNGCCACCGNAGTAC 39
consensus_9940#2      GCTGCTGCTAGGAGATGGCGAGAATACTCGAGAAAAGGCGCAGACAGGCCACCGGAGTAC 1071
consensus_9940#0      GCTGCTGCTAGGAGATGGCGAGAATACTCGAGAAAAGGCGCAGACAGGCCACCGGAGTAC 1057
                                                *   * *** *****  **  ******* *****

consensus_9940#1      AAACTTCCAGA-GGCAGCGGG-CAATAAAGA-GTA-ATAGCAGAACAAAGAAATATTTC- 1135
consensus_9940#3      AATCTTCCAAAAGGCAGCGGGGCAATAAAAAAGTATNTACCCCAACAAANAAATATTTC- 98
consensus_9940#2      AAACTTCCAGA-GGCAGCGGG-CAATAAAGA-GTA-ATAGCAGAACAAAGAAATATTTC- 1126
consensus_9940#0      AAACTTCCAGA-GGCAGCGGG-CAATAAAGA-ATGAATTCCGGGGCAAATTTCCTTTGGC 1114
                      ** ****** * ********* ******* *  *   *  *    ****      **   

consensus_9940#1      --TATCCTGCTTACGTTAT----CTGATAGCATTTCGTCACCCGTACATATAGCCTTATT 1189
consensus_9940#3      --TATCCTGCTTACNTTAT----CTGATANCATTTCGTCACCTGTACATATANCCTTATT 152
consensus_9940#2      --TATCCTGCTTACGTTAT----CTGATAGCATTTCGTCACCTGTACATATAGCCTTATT 1180
consensus_9940#0      AGTAGTCTGGTAACCCCCAGGCATCGATGATGAACTGCAACATCTGCCAAAGGACAACTT 1174
                        **  *** * **           ***        *  **   * *  *    *   **

consensus_9940#1      GTTTG--AAGAGAGCTG-ACATGTAG--------ATTGCTCTCTCCCAATTCCTCATTTT 1238
consensus_9940#3      GTTTG--AAAAAAGCTG-ACATNTAA--------ATTGCTCTCTCCCAATNCCCCATTTT 201
consensus_9940#2      GTTTG--AAGAGAGCTG-ACATGTAG--------ATTGCTCTCTCCCAATTCCTCATTTT 1229
consensus_9940#0      GCCCAGCAATGCAGCTGCACATCTCATGGTCTCAACCTATTTCTATCCGTGTGCCACATT 1234
                      *      **   ***** **** *          *    * ***  *  *    **  **

consensus_9940#1      TCATTTGTAATATATAGCTGATAA--CAATAACCTGTAGAATACAAACGTCAATAGTTAA 1296
consensus_9940#3      NCATTTGTAATATATANCTGATAA--CAATAACCTGTAAAATACAAACNTCAATANTTAA 259
consensus_9940#2      TCATTTGTAATATATAGCTGATAA--CAATAACCTGTAGAATACAAACGTCAATAGTTAA 1287
consensus_9940#0      TAGTTTCATGTGTAGAGCGCACAGTTCACTGATC-ATTGTGCAGTGATATTTATACTCGC 1293
                         ***    * ** * *  * *   ** * * *  *     *   *  *  *** *   

consensus_9940#1      ACATTCGGAATGTAAAAGATGAATATGTGCACATTCTCCTTCAACAATGGTATACATCCT 1356
consensus_9940#3      ACATTCGGAATGTANAAAATAAA------------------------------------- 282
consensus_9940#2      ACATTCGGAATGTAAAAGATGAATATGTGCACATTCTCCTTCAACAATGGTATACATCCT 1347
consensus_9940#0      TCCTGCATGGTGAAAGGCAGCAAGGCTTTTTGCAGCTACACGGCCTTTCTCTGCTCCTCC 1353
                       * * *    ** *    *  **                                     

consensus_9940#1      GAAGATCAAAAAAAAAAAAAAAAA------------------------------------ 1380
consensus_9940#3      ------------------------------------------------------------
consensus_9940#2      GAAAAAAAAAA------------------------------------------------- 1358
consensus_9940#0      TGCAAAGGCACACGGAGGCTGATAGGATATACTGTAGGACAATGCCTGCTCTCTAGATTG 1413
                                                                                  

consensus_9940#1      ------------------------------------------------------------
consensus_9940#3      ------------------------------------------------------------
consensus_9940#2      ------------------------------------------------------------
consensus_9940#0      TGCCCACTTACAGGAACAAAGTCTGAAATGGAGAGATCATTGTAGTGCATATATCTCCAA 1473
                                                                                  

consensus_9940#1      ------------------------------------------------------------
consensus_9940#3      ------------------------------------------------------------
consensus_9940#2      ------------------------------------------------------------
consensus_9940#0      TCTTTTTAGGTCATGGGGCTACTTCCCCGTTTATTCTTAGCCTAGCTTCTTGCTGTCCAG 1533
                                                                                  

consensus_9940#1      --------------------------------------
consensus_9940#3      --------------------------------------
consensus_9940#2      --------------------------------------
consensus_9940#0      ACCATGTAAAGTTAAGTAGCATCAAATATCTGCTGAGA 1571