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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9942#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1455 fasta sequence
[GGAGGCAACGTCGATTGTTCTAAGAGGAGTCCAATCGAGAACGAATCAGACGTTCACCATCTTCCGCGTCCCCGCCTTTCTTCGCGAGAGCAGCCGGACCTCCTACGAGCCGCGCTTGGTGTCCATCGGCCCCTACTACCACGGCGCCGCCGCGCTCCGCGCCATGGAGGACCACAAGTGGCGCTACCTCCACGACCTGCTGTCTCCGCAAGGACCGCCGGAACCCAACCATCGCGTTCCACTTCCACCCCTTGTCTCCGGACTCTCCGCATCCGCCTTGGTTGAGAAGATGCGGTCTCTCGAGGCCGAGGCGCGCGCCTGCTACAGCGAGCAACCCGTCGACCTCAGCTCCGACGACTTCGTCCAGATGCTCCTCCTGGACGGATGCTTCATCCTCGAGTTCTTCCGTAAGTGGCGCAGAAATCAGCCCGATGTGCTATGCGACGTTGGTTGGGGCCTCACGTTCGTCATCTCCGATTTGCTCCTTATGGAGAATCAGCTCCCGTTCTTCGTCCTCAAGAAGTTATATGTTACCGCCTTTGGCGAACAGGATGGCCAGGCCGGAAATAACCTCCTCCAGCTTCTCCTTCAGTACATCGCCGGCCGTCAAGTTCCAATCAGATGGCCGAACGGGCAGGTCAATCACATCCTACACCTGTACTACGAGAGCTTCGTGCCCCAGAGCCAGCGGACGGCGCAGCAAGAACAGAGTACCACGGCGCCGCGAGTGCTACCGTGCGCCGTCGAGATGAGCGAAGCCGGGATGACTTTCGCCGTGCGGCGGAACTCAGACAACGGCTACGACGTGGTGTTCGACTCCCTTAGGGGCGTCATGGAGATACCCACCATATTGATCGACGACGCGAAGACGCCGCTGCTCGCGAACCTGATCGCGTTCGAGCAGAGCCTGGGCAACGACGAGGCCATCCTCCTCAGCAGCTACGTGGCGCTGATGGGCCAGCTCATCGTCACGGCGCGCGACGTCGCGCTGCTCCGCCGGCGCGGCGTGCTGGAGAACATGCTGGCCAACGACGACGATGCCGCCCGGTTCTTCAACCACC-TCGGCGACT-GT-GGCG--CCGTC-AACCACGACA-GCCACGCCTTC-GTC-GGGCTCTACAAGGACGTGGACCGCTACTGCGGGACATGGT-GGCGGAGGAAGACGGCGGCGCTCCGGCGCGACTACTTCGCCAGCCCGTGGTCGGCCATCTCCTTCGTCGCCGCCGCAGTCGCCGTCGTGCTCGCAGTTATGCAGACCTACTTCACCATGTTTCCATTGAAAAAA-GGGTGAATTTGGT-AATTAA-GCACAATCACACAGTTGAGAGTTGTAAAATCTCT-ACTCCCATTGTTTCAGGGTATAAGACATTTTGACTATGGTTAAAGTCAAACTGCTTTAATTTTGAAAAAATTCGTAGAGAAAAGTATTACTACATCCGTCCTCTAATATAAGATATTTTGATA]
[+] EMBL CB670172 [GGAGGCAACGTCGATTGTTCTAAGAGGAGTCCAATCGAGAACGAATCAGACGTTCACCATCTTCCGCGTCCCCGCCTTTCTTCGCGAGAGCAGCCGGACCTCCTACGAGCCGCGCTTGGTGTCCATCGGCCCCTACTACCACGGCGCCGCCGCGCTCCGCGCCATGGAGGACCACAAGTGGCGCTACCTCCACGACCTGCTGTCTCCGCAAGGACCGCCGGAACCCAACCATCGCGTTCCACTTCCACCCCTTGTCTCCGGACTCTCCGCATCCGCCTTGGTTGAGAAGATGCGGTCTCTCGAGGCCGAGGCGCGCGCCTGCTACAGCGAGCAACCCGTCGACCTCAGCTCCGACGACTTCGTCCAGATGCTCCTCCTGGACGGATGCTTCATCCTCGAGTTCTTCCGTAAGTGGCGCAGAAATCAGCCCGATGTGCTATGCGACGTTGGTTGGGGCCTCACGTTCGTCATCTCCGATTTGCTCCTTATGGAGAATCAGCTCCCGTTCTTCGTCCTCAAGAAGTTATATGTTACCGCCTTTGGCGAACAGGATGGCCAGGCCGGAAATAACCTCCTCCAGCTTCTCCTTCAGTACATCGCCGGCCGTCAAGTTCCAATCAGATGGCCGAACGGGCAGGTCAATCACATCCTACACCTGTACTACGAGAGCTTCGTGCCCCAGAGCCAGCGGACGGCGCAGCAAGAACAGAGTACCACGGCGCCGCGAGTGCTACCG ]
[+] EMBL AK061217 [ TCACCATCTTCCGCGTCCCCGCCTTTCTTCGCGAGAGCAGCCGGACCTCCTACGAGCCGCGCTTGGTGTCCATCGGCCCCTACTACCACGGCGCCGCCGCGCTCCGCGCCATGGAGGACCACAAGTGGCGCTACCTCCACGACCTGCTGTCTCCGCAAGGACCGCCGGAACCCAACCATCGCGTTCCACTTCCACCCCTTGTCTCCGGACTCTCCGCATCCGCCTTGGTTGAGAAGATGCGGTCTCTCGAGGCCGAGGCGCGCGCCTGCTACAGCGAGCAACCCGTCGACCTCAGCTCCGACGACTTCGTCCAGATGCTCCTCCTGGACGGATGCTTCATCCTCGAGTTCTTCCGTAAGTGGCGCAGAAATCAGCCCGATGTGCTATGCGACGTTGGTTGGGGCCTCACGTTCGTCATCTCCGATTTGCTCCTTATGGAGAATCAGCTCCCGTTCTTCGTCCTCAAGAAGTTATATGTTACCGCCTTTGGCGAACAGGATGGCCAGGCCGGAAATAACCTCCTCCAGCTTCTCCTTCAGTACATCGCCGGCCGTCAAGTTCCAATCAGATGGCCGAACGGGCAGGTCAATCACATCCTACACCTGTACTACGAGAGCTTCGTGCCCCAGAGCCAGCGGACGCCGCAGCAAGAACAGAGTACCACGGCGCCGCGAGTGCTACCGTGCGCCGTCGAGATGAGCGAAGCCGGGATGACTTTCGCCGTGCGGCGGAACTCAGACAACGGCTACGACGTGGTGTTCGACTCCCTTAGGGGCGTCATGGAGATACCCACCATATTGATCGACGACGCGAAGACGCCGCTGCTCGCGAACCTGATCGCGTTCGAGCAGAGCCTGGGCAACGACGAGGCCATCCTCCTCAGCAGCTACGTGGCGCTGATGGGCCAGCTCATCGTCACGGCGCGCGACGTCGCGCTGCTCCGCCGGCGCGGCGTGCTGGAGAACATGCTGGCCAACGACGACGATGCCGCCCGGTTCTTCAACCACC TCGGCGACT GT GGCG CCGTC AACCACGACA GCCACGCCTTC GTC GGGCTCTACAAGGACGTGGACCGCTACTGCGGGACATGGT GGCGGAGGAAGACGGCGGCGCTCCGGCGCGACTACTTCGCCAGCCCGTGGTCGGCCATCTCCTTCGTCGCCGCCGCAGTCGCCGTCGTGCTCGCAGTTATGCAGACCTACTTCACCATGTTTCCATTGAAAAAA GGGTGAATTTGGT AATTAA GCACAATCACACAGTTGAGAGTTGTAAAATCTCT ACTCCCATTGTTTCAGGGTATAAGACATTTTGACTATGGTTAAAGTCAAACTGCTTTAATTTTGATTAAGTTCGTAGAGAAAAGTATTACTACATCCGTCCTCTAATATAAGATATTTTGATA]
[-] EMBL CB670173 [ CAACGGCTACGACGTGGTGTTCGACTCCCTTAGGGGCGTCATGGAGATACCCACCATATTGATTGTCGACGCGAAGACGCCGCTGCTCGCGAACCTGATCGCGTTCGAGCAGAGCCTGGGCAACGTCGAGGCCATCCTCCTCAGCAGCTACGTGGCGCTGATGGGCCAGCTCATCGTCACGGCGCGCGATGTCGCGCTGCTCCTCCGGCGCGGCGTGCTGGAGAACATGCTGGCCAAAGACGACGATGCCGCCCGGTTCTTCAACCACC TCGGCGACT GT GGCG CGGTC AACCACGACA GCCACGCCTTC GTC GGGCTGTACAAGGACGTGGACCGCTACTGCGGGACATGGT GGCGGAGGAAGACGGCGGCGCTCCGGCGCGATTACTTCGCCAGCCCGTGGTCGGCCATCTCCTTGGTAGCCGCGGCAGTCGCCGTCGTGCTGGCAGTTATGCAGACCTACTTCACCATGTTTCCATTGAAAAAAGGGGTGAATTTGGT AATTAA GCACAATCACACAGTTGAGA ]
[+] EMBL OSS0765A [ TGGCCAACGACGACGATGCCGCCCGGTTCTTCAACCACC TCGGCGACT GT GGCG CGTC AACCACGACA GCCACGCCTTC GTC GGGCTCTACAAGGACGTGGACCGCTACTGCGGGACATGGT GGCGGAGGAAGACGGCGGCGCTCCGGCGCGACTACTTCGCCAGCCCGTGGTCGGCCATCTCCTTCGTCGCCGCCGCAGTCGCCGTCGTGCTCGCAGTTATGCAGACCTACTTCACCATGTTTCCATTGAAAAAA GGGTGAATTTGGT AATTAA GCACAATCACACAGTTGAGAGTTGTAAAATCTCT ACTCCCATTGTTTCAGGGTATAAGACATTTTGACTATGGTTAAA ]
[+] EMBL AU078161 [ CCACCTTCGGCGACTAGTGGGCGGCCCGTCAAACCACGACAGGCNACGCCTTCAGTCAGGGCTCTACAAGGACGTGGA CGCTACTGCGGGACATGGTNGGCGGAGGAAGACGGCG NCTCCGGCGCGACTACTTCGCCAGCCCGTGGTCGGCCATCTCCTTCGTCGCCGCCGCAGTCGCCGTCGTGCTCGCAGTTATGCAGACCTACTTCACCATGTTTCCATTGAAAAAA GGGTGAATTTGGT AATTAA GCACAATCACACAGTTGAGAGTTGTAAAATCTCT ACTCCCATTGTTTCAGGGTATAAGACATTTTGACTATGGTTAAAGTCAAACTGCTTTAATTTTGAAAAAA ]
[+] EMBL AU081026 [ AAA GGGTGAATTTGGTGAATTAAGGCACAATCACACAGTTGAGAGTTGTAAAATCTCTNACTCCCATTGTTTCAGGGTATAAGACATTTTGACTATGGTTAAAGTCAAACTGCTTTAATTTTGAAAAAAaaa ]
consensusID : consensus_9942#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 186 fasta sequence
[TGGCCAACGACGACGNTGCCGNCCGGTTCTTCAACCACCTCGGCGACTGTTGGNGCGTNCAACCACGTCAGNCACGTCTTCGTCGGGCTCTACAAGGANGTGGACCGCTACTGNGGGACATGGTGGCGGAGGAAGACGGCGGNGCTCCGGCGNGACTACTTCGCCAGNCCGTGGTCGGCCATCTCC]
[+] EMBL OSS1004A [TGGCCAACGACGACGNTGCCGNCCGGTTCTTCAACCACCTCGGCGACTGTTGGNGCGTNCAACCACGTCAGNCACGTCTTCGTCGGGCTCTACAAGGANGTGGACCGCTACTGNGGGACATGGTGGCGGAGGAAGACGGCGGNGCTCCGGCGNGACTACTTCGCCAGNCCGTGGTCGGCCATCTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9942#0 GGAGGCAACGTCGATTGTTCTAAGAGGAGTCCAATCGAGAACGAATCAGACGTTCACCAT 60
consensus_9942#1 ------------------------------------------------------------
consensus_9942#0 CTTCCGCGTCCCCGCCTTTCTTCGCGAGAGCAGCCGGACCTCCTACGAGCCGCGCTTGGT 120
consensus_9942#1 ------------------------------------------------------------
consensus_9942#0 GTCCATCGGCCCCTACTACCACGGCGCCGCCGCGCTCCGCGCCATGGAGGACCACAAGTG 180
consensus_9942#1 ------------------------------------------------------------
consensus_9942#0 GCGCTACCTCCACGACCTGCTGTCTCCGCAAGGACCGCCGGAACCCAACCATCGCGTTCC 240
consensus_9942#1 ------------------------------------------------------------
consensus_9942#0 ACTTCCACCCCTTGTCTCCGGACTCTCCGCATCCGCCTTGGTTGAGAAGATGCGGTCTCT 300
consensus_9942#1 ------------------------------------------------------------
consensus_9942#0 CGAGGCCGAGGCGCGCGCCTGCTACAGCGAGCAACCCGTCGACCTCAGCTCCGACGACTT 360
consensus_9942#1 ------------------------------------------------------------
consensus_9942#0 CGTCCAGATGCTCCTCCTGGACGGATGCTTCATCCTCGAGTTCTTCCGTAAGTGGCGCAG 420
consensus_9942#1 ------------------------------------------------------------
consensus_9942#0 AAATCAGCCCGATGTGCTATGCGACGTTGGTTGGGGCCTCACGTTCGTCATCTCCGATTT 480
consensus_9942#1 ------------------------------------------------------------
consensus_9942#0 GCTCCTTATGGAGAATCAGCTCCCGTTCTTCGTCCTCAAGAAGTTATATGTTACCGCCTT 540
consensus_9942#1 ------------------------------------------------------------
consensus_9942#0 TGGCGAACAGGATGGCCAGGCCGGAAATAACCTCCTCCAGCTTCTCCTTCAGTACATCGC 600
consensus_9942#1 ------------------------------------------------------------
consensus_9942#0 CGGCCGTCAAGTTCCAATCAGATGGCCGAACGGGCAGGTCAATCACATCCTACACCTGTA 660
consensus_9942#1 ------------------------------------------------------------
consensus_9942#0 CTACGAGAGCTTCGTGCCCCAGAGCCAGCGGACGGCGCAGCAAGAACAGAGTACCACGGC 720
consensus_9942#1 ------------------------------------------------------------
consensus_9942#0 GCCGCGAGTGCTACCGTGCGCCGTCGAGATGAGCGAAGCCGGGATGACTTTCGCCGTGCG 780
consensus_9942#1 ------------------------------------------------------------
consensus_9942#0 GCGGAACTCAGACAACGGCTACGACGTGGTGTTCGACTCCCTTAGGGGCGTCATGGAGAT 840
consensus_9942#1 ------------------------------------------------------------
consensus_9942#0 ACCCACCATATTGATCGACGACGCGAAGACGCCGCTGCTCGCGAACCTGATCGCGTTCGA 900
consensus_9942#1 ------------------------------------------------------------
consensus_9942#0 GCAGAGCCTGGGCAACGACGAGGCCATCCTCCTCAGCAGCTACGTGGCGCTGATGGGCCA 960
consensus_9942#1 ------------------------------------------------------------
consensus_9942#0 GCTCATCGTCACGGCGCGCGACGTCGCGCTGCTCCGCCGGCGCGGCGTGCTGGAGAACAT 1020
consensus_9942#1 ------------------------------------------------------------
consensus_9942#0 GCTGGCCAACGACGACGATGCCGCCCGGTTCTTCAACCACCTCGGCGACTGT-GGCGCCG 1079
consensus_9942#1 --TGGCCAACGACGACGNTGCCGNCCGGTTCTTCAACCACCTCGGCGACTGTTGGNGCGT 58
*************** ***** **************************** ** **
consensus_9942#0 TCAACCACGACAGCCACGCCTTCGTCGGGCTCTACAAGGACGTGGACCGCTACTGCGGGA 1139
consensus_9942#1 NCAACCACGTCAGNCACGTCTTCGTCGGGCTCTACAAGGANGTGGACCGCTACTGNGGGA 118
******** *** **** ********************* ************** ****
consensus_9942#0 CATGGTGGCGGAGGAAGACGGCGGCGCTCCGGCGCGACTACTTCGCCAGCCCGTGGTCGG 1199
consensus_9942#1 CATGGTGGCGGAGGAAGACGGCGGNGCTCCGGCGNGACTACTTCGCCAGNCCGTGGTCGG 178
************************ ********* ************** **********
consensus_9942#0 CCATCTCCTTCGTCGCCGCCGCAGTCGCCGTCGTGCTCGCAGTTATGCAGACCTACTTCA 1259
consensus_9942#1 CCATCTCC---------------------------------------------------- 186
********
consensus_9942#0 CCATGTTTCCATTGAAAAAAGGGTGAATTTGGTAATTAAGCACAATCACACAGTTGAGAG 1319
consensus_9942#1 ------------------------------------------------------------
consensus_9942#0 TTGTAAAATCTCTACTCCCATTGTTTCAGGGTATAAGACATTTTGACTATGGTTAAAGTC 1379
consensus_9942#1 ------------------------------------------------------------
consensus_9942#0 AAACTGCTTTAATTTTGAAAAAATTCGTAGAGAAAAGTATTACTACATCCGTCCTCTAAT 1439
consensus_9942#1 ------------------------------------------------------------
consensus_9942#0 ATAAGATATTTTGATA 1455
consensus_9942#1 ----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||