These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9943#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1309 fasta sequence [GCCGCCTTCTCACTCCTCACCTGCTCCTGTCTCCGGAGCACCAGCCCGACCAGGCTCCCCTCCTCCTCGCTCCGCCTCCCGCTCCGCCGCGGCCCGCTCGCCGCGATGGCCACGGCCGCCTCCTTCCGCCCGGAGGCCGCGCGGTCGCCTCCCGCCGTCCAGCCCCCGGCGCCGCCGCTCTCCAAGTTCAAGGTGGCGCTGTGCCAGCTGTCGGTCACGGCGGACAAGGCTCGCAACATCGCGCGGGCGCGCGAGGCCATCGAGGCTGCCGCGGCGGGCGGCGCCAAGCTCGTGCTTCTCCCGGAGATATGGAATGGTCCATATTCAAATGACAGCTTTCCAGAATATGCCGAAGACATCGAAGCCGGTGGTGATGCAGCTCCTTCATTTTCAATGATGTCAGAGGTTGCTCGCAGCTTGCAAATTACTCTTGTTGGTGGATCCATATCAGAACGTTCTGGTAACAAGTTGTACAATACATGCTGTGTCTTTGGTTCAGATGGCGAGCTTAAGGGCAAGCACAGAAAGATCCATCTTTTTGACATTGACATTCCTGGAAAGATTACATTCAAGGAATCGAAGACTCTTACTGCTGGGCAGGATCTTACTGTTGTAGACACAGATGTAGGCCGGATTGGTATAGGTATTTGTTATGACATTCGTTTCCAGGAATTGGCAATGTTGTATGCTGCGAGAGGTGCTCATTTGTTATGCTATCCCGGTGCATTTAACATGACTACAGGGCCATTGCACTGGGAGTTGCTGCAAAGGGCAAGGGCTGCA-GACAATCAGCTGT-TTGTGGCAACCTGTGCACCAGCTCGAGACACCA-GTGCAGGTTATATTGCTTGGGGACATTCCACTCTTGTTGGACCTTTTGGGGAAGTGATTGCTACCGCTGAGCATGAGGAGACCACTATAATGGCAGAAATTGATTATTCATTGATTGATCAGAGGAGGCAATTTCTTCCTCTGCAATATCAACGCCGGGGCGATCTCTATCAGTTGGTAGATGTCCAGAGATCCGGCTCTGATGAGTAGCCAGCCTGGATGCATTGCGCCACTA-GGCGTGATCCGTGAAAATATTATTCGTCCGCGAGATGCATGTGCCCACCCTTATCCGCAGCAGTTCACCCAGGAACATTGAC-TTCGTGTGT-GAAGAGGTGACCTGTAACACGTACCTTGCCAAATTGATTTACTATAAACATTATCATGGT-AATAAT-AAAAAGTCGAAATTAAATGCTCTAAAAAAAAAAAAAAAAAAACTCGAACTTNTTTGCGGGGGGGGCCCNGTACCCCAATCCCCTAAAGG] [+] EMBL AK059981 [GCCGCCTTCTCACTCCTCACCTGCTCCTGTCTCCGGAGCACCAGCCCGACCAGGCTCCCCTCCTCCTCGCTCCGCCTCCCGCTCCGCCGCGGCCCGCTCGCCGCGATGGCCACGGCCGCCTCCTTCCGCCCGGAGGCCGCGCGGTCGCCTCCCGCCGTCCAGCCCCCGGCGCCGCCGCTCTCCAAGTTCAAGGTGGCGCTGTGCCAGCTGTCGGTCACGGCGGACAAGGCTCGCAACATCGCGCGGGCGCGCGAGGCCATCGAGGCTGCCGCGGCGGGCGGCGCCAAGCTCGTGCTTCTCCCGGAGATATGGAATGGTCCATATTCAAATGACAGCTTTCCAGAATATGCCGAAGACATCGAAGCCGGTGGTGATGCAGCTCCTTCATTTTCAATGATGTCAGAGGTTGCTCGCAGCTTGCAAATTACTCTTGTTGGTGGATCCATATCAGAACGTTCTGGTAACAAGTTGTACAATACATGCTGTGTCTTTGGTTCAGATGGCGAGCTTAAGGGCAAGCACAGAAAGATCCATCTTTTTGACATTGACATTCCTGGAAAGATTACATTCAAGGAATCGAAGACTCTTACTGCTGGGCAGGATCTTACTGTTGTAGACACAGATGTAGGCCGGATTGGTATAGGTATTTGTTATGACATTCGTTTCCAGGAATTGGCAATGTTGTATGCTGCGAGAGGTGCTCATTTGTTATGCTATCCCGGTGCATTTAACATGACTACAGGGCCATTGCACTGGGAGTTGCTGCAAAGGGCAAGGGCTGCA GACAATCAGCTGT TTGTGGCAACCTGTGCACCAGCTCGAGACACCA GTGCAGGTTATATTGCTTGGGGACATTCCACTCTTGTTGGACCTTTTGGGGAAGTGATTGCTACCGCTGAGCATGAGGAGACCACTATAATGGCAGAAATTGATTATTCATTGATTGATCAGAGGAGGCAATTTCTTCCTCTGCAATATCAACGCCGGGGCGATCTCTATCAGTTGGTAGATGTCCAGAGATCCGGCTCTGATGAGTAGCCAGCCTGGATGCATTGCGCCACTA GGCGTGATCCGTGAAAATATTATTCGTCCGCGAGATGCATGTGCCCACCCTTATCCGCAGCAGTTCACCCAGGAACATTGAC TTCGTGTGT GAAGAGGTGACCTGTAACACGTACCTTGCCAAATTGATTTACTATAAACATTATCATGGT AATAAT AAAAGGTCGAA ] [+] EMBL BP184696 [ GCGCGGTCGCCTCCCGCCGTCCAGCCCCCGGCGCCGCCGCTCTCCAAGTTCAAGGTGGCGCTGTGCCAGCTGTCGGTCACGGCGGACAAGGCTCGCAACATCGCGCGGGCGCGCGAGGCCATCGAGGCTGCCGCGGCGGGCGGCGCCAAGCTCGTGCTTCTCCCGGAGATATGGAATGGTCCATATTCAAATGACAGCTTTCCAGAATATGCCGAAGACATCGAAGCCGGTGGTGATGCAGCTCCTTCATTTTCAATGATGTCAGAGGTTGCTCGCAGCTTGCAAATTACTCTTGTTGGTGGATCCATATCAGAACGTTCTGGTAACAAGTTGTACAATACATGCTGTGTCTTTGGTTCAGATGGCGAGCTTAAGGGCAAGCACAGAAAGATCCATCTTTTTGACATTGACATTCCTGGAAAGATTACATTCAAGGAATCGAAGACTCTTACTGCTGGGCAGGATCTTACTGTTGTAGACACAGATGTAGGCCGGATTGGTATAGGTATTTGTTATGACATTCGTTTCCAGGAATTGGCAATGTTGTATGCTGCGAGAGGTGCTCATTTGTTATGCTATCCCGGTGCATTTAACATGACTACAGGGCCATTGCACTGGGAGTTGCTGC AAGGGCAAGG ] [+] EMBL BP184420 [ CGCGGTCGCCTCCCGCCGTCCAGCCCCCGGCGCCGCCGCTCTCCAAGTTCAAGGTGGCGCTGTGCCAGCTGTCGGTCACGGCGGACAAGGCTCGCAACATCGCGCGGGCGCGCGAGGCCATCGAGGCTGCCGCGGCGGGCGGCGCCAAGCTCGTGCTTCTCCCGGAGATATGGAATGGTCCATATTCAAATGACAGCTTTCCAGAATATGCCGAAGACATCGAAGCCGGTGGTGATGCAGCTCCTTCATTTTCAATGATGTCAGAGGTTGCTCGCAGCTTGCAAATTACTCTTGTTGGTGGATCCATATCAGAACGTTCTGGTAACAAGTTGTACAATACATGCTGTGTCTTTGGTTCAGATGGCGAGCTTAAGGGCAAGCACAGAAAGATCCATCTTTTTGACATTGACATTCCTGGAAAGATTACATTCAAGGAATCGAAGACTCTTACTGCTGGGCAGGATCTTACTGTTGTAGACACAGATGTAGGCCGGATTGGTATAGGTATTTGTTATGACATTCGTTTCCAGGAATTGGCAATGTTGTATGCTGCGAGAGGTGCTCATTTGTTATGCTATCCCGGTGCATTTAACATGACTA ] [+] EMBL CA757915 [ TACAATACATGCTGTGTCTTTGGTTCAGATGGCGAGCTTAAGGGCAAGCACAGAAAGATCCATCTTTTTGACATTGACATTCCTGGAAAGATTACATTCAAGGAATCGAAGACTCTTACTGCTGGGCAGGATCTTACTGTTGTAGACACAGATGTAGGCCGGATTGGTATAGGTATTTGTTATGACATTCGTTTCCAGGAATTGGCAATGTTGTATGCTGCGAGAGGTGCTCATTTGTTATGCTATCCCGGTGCATTTAACATGACTACAGGGCCATTGCACTGGGAGTTGCTGCAAAGGGCAAGGGCTGCA GACAATCAGCTGT TTGTGGCAACCTGTGCACCAGCTCGAGACACCA GTGCAGGTTATATTGCTTGGGGACATTCCACTCTTGTTGGACCTTTTGGGGAAGTGATTGCTACCGCTGAGCATGAGGAGACCACTATAATGGCAGAAATTGATTATTCATTGATTGATCAGAGGAGGCAATTTCTTCCTCTGCAATATCAACGCCGGGGCGATCTCTATCAGTTGGTAGATGTCCAGAGATCCGGCTCTGATGAGTAGCCAGCCTGGATGCATTGCGCCACTAGGGCGTGATCCGTGAAAATATTATTCGTCCGCGAGATGCATGTGCCCACCCTTATCGGCAGCAGTTCACCCAGGAACATTGACTTTCGTGTGTGGAAGAGGTGACCTGTAACACGTACCTTGCCAANATGATTTACTATAAACATTATCATGGTNANTAATNAAAAAGTCGAAATTAAATGCTCTAAAAAAAAAAAAAAAAAAACTCGAACTTNTTTGCGGGGGGGGCCCNGTACCCCAATCCCCTAAAGG] [+] EMBL BM420408 [ ATTGCACTGGGAGTTGCTGCAAAGGGCAA GGCTGCATGACAATCANCTGTGTTGTGGCAACCTGTGCACCAGCTCGAGACACCACGTGCAGGTTATATTGCTTGGGGACATTCCACTCTTGTTGGACCTTTTGGGGAAGTGATTGCTACCGCTGAGCATGAGGAGACCACTATAATGGCAGAAATTGATTATTCATTGATTGATCAGAGGAGGCAATTTCTTCCTCTGCAATATCAACGCCGGGGCGATCTCTATCAGTTGGTAGATGTCCAGAGATCCGGCTCTGATGAGTAGCCAGCCTGGATGC TTGCGCCACTA GGCGTGATCCGTGAAAATATTATTCGTCCGCGAGATGCATGTGCCCACCCTTATCCGCAGCAGTTCACCCAGGAAC TTGAC TTCGTGTGT GAAGAGGTGACCTGTAACACGTACCTTGCC AATTGATTTACTATAAACATTATCATGGT AATAAT AAAAAGTCGAAATTAAATGCTCTAAAAAAAAAA ] [-] EMBL AW070121 [ ACTCTTGTTGGACCTTTTGGGGAAGTGATTGCTACCGCTGAGCATGAGGAGACCACTATAATGGCAGAAATTGATTATTCATTGATTGATCAGAGGAGGCAATTTCTTCCTCTGCAATATCAACGCCGGGGCGATCTCTATCA ] consensusID : consensus_9943#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence [CACCTGCTCCTGTCTCCGGAGCACCAGCCCGACCAGGCTCCCCTCCTCCTCGCTCCGCCTCCCGCTCCGCCGCGGCCCGCTCGCCGCGATGGCCACGGCCGCCTCCTTCCGCCCGGAGGCCGCGCGGTCGCCTCCCGCCGTCCAGCCCCCGGCGCCGCCGCTCTCCAAGTTCAAGGTGGCGCTGTGCCAGCTGTCGGTCACGGCGGACAAGGCTCGCAACATCGCGCGGGCGCGCGAGGCCATCGAGGCTGCCGCGGCGGGCGGCGCCAAGCTCGTGCTTCTCCCGGTGAGCGCTCGGTTGATCATAACGACCTCTCGTTTTGTCTGCTCGTCCGATTTAAATGGGAGGCGGAGAGGTGAGGATTGAGTGTGATGGAGTCATAGCTCGGCAAGGGTTCGCGGATAGGATCATAGGACCACACGATCTTAGCGTGGTTACGTACATTGAACTGTGAATAGCACTAGCACTGTTATGCACAGTGACAGAAGACACCTCTCACTTCACATCTTAAAACCATGAATGTGCCTCTTGGATTGTGTTTCCGCATGATTTGGTGACCAGATGGAATAGTTTGTACTGTTGCTTGATCGGGTTATCTCCTACCTGTGACAATTTGGTCTTGC] [+] EMBL CB639881 [CACCTGCTCCTGTCTCCGGAGCACCAGCCCGACCAGGCTCCCCTCCTCCTCGCTCCGCCTCCCGCTCCGCCGCGGCCCGCTCGCCGCGATGGCCACGGCCGCCTCCTTCCGCCCGGAGGCCGCGCGGTCGCCTCCCGCCGTCCAGCCCCCGGCGCCGCCGCTCTCCAAGTTCAAGGTGGCGCTGTGCCAGCTGTCGGTCACGGCGGACAAGGCTCGCAACATCGCGCGGGCGCGCGAGGCCATCGAGGCTGCCGCGGCGGGCGGCGCCAAGCTCGTGCTTCTCCCGGTGAGCGCTCGGTTGATCATAACGACCTCTCGTTTTGTCTGCTCGTCCGATTTAAATGGGAGGCGGAGAGGTGAGGATTGAGTGTGATGGAGTCATAGCTCGGCAAGGGTTCGCGGATAGGATCATAGGACCACACGATCTTAGCGTGGTTACGTACATTGAACTGTGAATAGCACTAGCACTGTTATGCACAGTGACAGAAGACACCTCTCACTTCACATCTTAAAACCATGAATGTGCCTCTTGGATTGTGTTTCCGCATGATTTGGTGACCAGATGGAATAGTTTGTACTGTTGCTTGATCGGGTTATCTCCTACCTGTGACAATTTGGTCTTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9943#0 GCCGCCTTCTCACTCCTCACCTGCTCCTGTCTCCGGAGCACCAGCCCGACCAGGCTCCCC 60 consensus_9943#1 -----------------CACCTGCTCCTGTCTCCGGAGCACCAGCCCGACCAGGCTCCCC 43 ******************************************* consensus_9943#0 TCCTCCTCGCTCCGCCTCCCGCTCCGCCGCGGCCCGCTCGCCGCGATGGCCACGGCCGCC 120 consensus_9943#1 TCCTCCTCGCTCCGCCTCCCGCTCCGCCGCGGCCCGCTCGCCGCGATGGCCACGGCCGCC 103 ************************************************************ consensus_9943#0 TCCTTCCGCCCGGAGGCCGCGCGGTCGCCTCCCGCCGTCCAGCCCCCGGCGCCGCCGCTC 180 consensus_9943#1 TCCTTCCGCCCGGAGGCCGCGCGGTCGCCTCCCGCCGTCCAGCCCCCGGCGCCGCCGCTC 163 ************************************************************ consensus_9943#0 TCCAAGTTCAAGGTGGCGCTGTGCCAGCTGTCGGTCACGGCGGACAAGGCTCGCAACATC 240 consensus_9943#1 TCCAAGTTCAAGGTGGCGCTGTGCCAGCTGTCGGTCACGGCGGACAAGGCTCGCAACATC 223 ************************************************************ consensus_9943#0 GCGCGGGCGCGCGAGGCCATCGAGGCTGCCGCGGCGGGCGGCGCCAAGCTCGTGCTTCTC 300 consensus_9943#1 GCGCGGGCGCGCGAGGCCATCGAGGCTGCCGCGGCGGGCGGCGCCAAGCTCGTGCTTCTC 283 ************************************************************ consensus_9943#0 CCGGAGA-TATGGAATGGTCCATATTCAAATGACAGCTTTCCAGAATATGCCGAAGACAT 359 consensus_9943#1 CCGGTGAGCGCTCGGTTGATCATAACGACCTCTCGTTTTGTCTGCTCGTCCGATTTAAAT 343 **** ** * * **** * * * ** * * * * * ** consensus_9943#0 CGAAGCCGGTGGTGATGCAGCTCCTTCATTTTCAATGATGTCAGAGGTTGCTCGCAGCTT 419 consensus_9943#1 GGGAGGCGG-AGAGGTGAGGATT----GAGTGTGATGGAGTCATAGCTCGGCAAGGGTTC 398 * ** *** * * ** * * * *** **** ** * * * * consensus_9943#0 GCAAATTACTCTTGTTGGTGGATCCATATCAGAACGTTCTGGTAACAAGTTGTACAATAC 479 consensus_9943#1 GCGGATAG-----GATCATAGGACCACACGATCTTAGCGTGGTTAC-----GTACATTGA 448 ** ** * * * * *** * * **** ** ***** * consensus_9943#0 ATGCTGTGTCTTTGGTTCAGATGGCGAGCTTAAGGGCAAGCACAGAAAGATCCATCTTTT 539 consensus_9943#1 AC----TGTGAATAGCAC---TAGCACTGTTATGCACAGTGACAGAAGACACCTCTCACT 501 * *** * * * * ** *** * ** ****** ** * consensus_9943#0 TGACATTGACATTCCTGGAAAGATTACATTCAAGGAATCGAAGACTCTTACTGCTGGGCA 599 consensus_9943#1 TCACATCTTAAAACC----ATGAATGTGCCTCTTGGATTGTGTTTCCGCATGATTTGGTG 557 * **** * ** * ** * * ** * * * * ** consensus_9943#0 GGATCTTACTGTTGTAGACACAGATGTAGGCCGGATTGGTATAGGTATTTGTTATGACAT 659 consensus_9943#1 ACCAGATGGAATAGTTTGTACTGTT----GCTTGATCGGGTTATCTCCTACCTGTGACAA 613 * * ** ** * * ** *** ** ** * * * ***** consensus_9943#0 TCGTTTCCAGGAATTGGCAATGTTGTATGCTGCGAGAGGTGCTCATTTGTTATGCTATCC 719 consensus_9943#1 TTTGGTCTTGC------------------------------------------------- 624 * ** * consensus_9943#0 CGGTGCATTTAACATGACTACAGGGCCATTGCACTGGGAGTTGCTGCAAAGGGCAAGGGC 779 consensus_9943#1 ------------------------------------------------------------ consensus_9943#0 TGCAGACAATCAGCTGTTTGTGGCAACCTGTGCACCAGCTCGAGACACCAGTGCAGGTTA 839 consensus_9943#1 ------------------------------------------------------------ consensus_9943#0 TATTGCTTGGGGACATTCCACTCTTGTTGGACCTTTTGGGGAAGTGATTGCTACCGCTGA 899 consensus_9943#1 ------------------------------------------------------------ consensus_9943#0 GCATGAGGAGACCACTATAATGGCAGAAATTGATTATTCATTGATTGATCAGAGGAGGCA 959 consensus_9943#1 ------------------------------------------------------------ consensus_9943#0 ATTTCTTCCTCTGCAATATCAACGCCGGGGCGATCTCTATCAGTTGGTAGATGTCCAGAG 1019 consensus_9943#1 ------------------------------------------------------------ consensus_9943#0 ATCCGGCTCTGATGAGTAGCCAGCCTGGATGCATTGCGCCACTAGGCGTGATCCGTGAAA 1079 consensus_9943#1 ------------------------------------------------------------ consensus_9943#0 ATATTATTCGTCCGCGAGATGCATGTGCCCACCCTTATCCGCAGCAGTTCACCCAGGAAC 1139 consensus_9943#1 ------------------------------------------------------------ consensus_9943#0 ATTGACTTCGTGTGTGAAGAGGTGACCTGTAACACGTACCTTGCCAAATTGATTTACTAT 1199 consensus_9943#1 ------------------------------------------------------------ consensus_9943#0 AAACATTATCATGGTAATAATAAAAAGTCGAAATTAAATGCTCTAAAAAAAAAAAAAAAA 1259 consensus_9943#1 ------------------------------------------------------------ consensus_9943#0 AAACTCGAACTTNTTTGCGGGGGGGGCCCNGTACCCCAATCCCCTAAAGG 1309 consensus_9943#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||