cluster # 9947

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Oryza sativa
cluster # 9947 cluster # 9947 Sequences # 7 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9947#0 length = 2040 sequences # 7
consensusID : consensus_9947#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 2040
fasta sequence
                              [CAGAGTCAACCACGCCCGCACAACGCGAAAACACCGCGTTTCCCCCACCATTTCCGCCCGAAATCAACCGGGCCAAGAAAAAAAAAAAAAAACAGCACACCGCCGACGAGATGCGCCTCCACCTCGCCCTCCTCGCCGCGCTCCTCACCCTCGCCGCCGCCGCCCAGCCGCCATTCCGCGGCTACTACTACCTGCTCGACTGCGGCGCCGCGGCGTCCACCACCGACAGCCGCGGCCTCGAGTGGCTCCCCGATGGCGGCTACGTCACCGGCGGCGAGCCCCACCAGCTCCCCGACCAGGGCCTCCTCGACCCGGCGCTCGCCACCCGCCGTGACTTCCCGCACGAGCCCGGGAAGAAGTTCTGCTACGAGCTCCCCGTCGACCGCAACCGCCGCTACCTGCTCCGCCCCACCTTCTTCTACGGGGCCTCCTCGCCGCCGCCGCCCGTCTTCGACCTCATCGTGGACGGCACCTTCTGGACCGCCGTCAACACCACCGACGACGTCCTCGCCGGCAGCGCCTCCTACTACGAGGCCGTCTTCGGCGCGAGCGGCAGGAACATGAGTTTCTGCCTCGGCGTGAACCCGGACTACACCAGCGCTGGCCCTTTCATCAACGCGCTGCAGGTGATCCAGCTTCACGATTCGGTGTACAACGCCACGAACTTCACTACCAGCGCCATGGGGCTCATTGCGCGTACCAAGTTTGGCTCCACCGACGGTGTTGAGAGGTACCCTAATGACACCTTCAATCGGTATTGGCAGCCATTCCCAGACAGTAAACATGCAGTCAGTAGTACCCACAATGTCACATCGGCTGATTTTTGGAATCTTCCACCTCCTGGGGTGTTTAATACAGCTTTGGTGGCAGAACAAGATGCACCCTTGGTGCTGCAATGGCCTCCAATACCTCTCCAGAATGATAGCTATTATGTTGCTCTTTATTTTGCTGATACAGTCTCTGAGAGTTCAAGGACCTTTAATGTATATATAAATGATTACAGCTTCTATGAAGGCCTAACAGTAACATCAGCTGGTCTTTCTGTCTTTGCAACACAATGGATTCTCTCAGGCTTGACCAGAGTTATTTTGGCTCCTATTTCTGGCCTTCCTCCACTTATCAATGCTGGTGAAGTCTTTGGACTTTTCCCACTAGGAGGATACACATTTCCTCGGGATGCACATGCCCTGGAAGCTATTAAGAGAAGCCTTCAAAATATACCTGATGATTGGAATGGAGATCCATGTATGCCTCATGGATATGCTTGGACTGGAGTTACATGTGATAAAGGCCAAATACCACGTGTCATCTCACTGAACTTTTCAAGTATGGGCCTCTCTGGATATCTTTCATCTGATATTGCAAGGCTCACCGCTCTGACTGATATATCTTTTGCAAACAATAGCTTGTCTGGACCTATTCCAAATCTCAGCAACCTGAGGAATCTCACAAGACTGCACCTGCAGGACAACAAATTAAATGGAACAGTACCGCAGACACTGGGGATAATCACATCTTTGCGTGAACTATTCTTGCAGAACA-ATGAACTGGATGGAGCAGTTCCA-CTGAACTTGCTGTTGAATCAAGGTTTGACTTACCAGTTTCTTCCGGGGAACAACTTTTTTCCAAGACCA-CCTCGCTGACAATCAGGCATTTTATTTGCAACCAATTGCTCCCAACTGTACTCAACAGAATTCAAAACTAGGAGGACAGTTTGTCGATTCTTTGGGTGGCTACACCAAGATTTTGTTGCCGTTCTGTACATGAAAGCAAGTTTACAGTGTCAGATGATTTGGACCTAGTCAAAGCCGTTAGCAACGGCAGTGAATAGTAGAACTGATTGTACAGTTTGTTGTAGGTTACATTGTCAATATATTCAGGAGGAAGGGTTGTGATACCCAAGAAGTGTTTGATGATCTTTCGGGACATTGCCCTTGAAACTAGAACCGGATACTGTACTGTGAGGCTGTGAAAGGGGACA-CAATATATATGGTCTACGTCTTTTTTTTTCTTTAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK073507             [CAGAGTCAACCACGCCCGCACAACGCGAAAACACCGCGTTTCCCCCACCATTTCCGCCCGAAATCAACCGGGCCAAGAAAAAAAAAAAAAAACAGCACACCGCCGACGAGATGCGCCTCCACCTCGCCCTCCTCGCCGCGCTCCTCACCCTCGCCGCCGCCGCCCAGCCGCCATTCCGCGGCTACTACTACCTGCTCGACTGCGGCGCCGCGGCGTCCACCACCGACAGCCGCGGCCTCGAGTGGCTCCCCGATGGCGGCTACGTCACCGGCGGCGAGCCCCACCAGCTCCCCGACCAGGGCCTCCTCGACCCGGCGCTCGCCACCCGCCGTGACTTCCCGCACGAGCCCGGGAAGAAGTTCTGCTACGAGCTCCCCGTCGACCGCAACCGCCGCTACCTGCTCCGCCCCACCTTCTTCTACGGGGCCTCCTCGCCGCCGCCGCCCGTCTTCGACCTCATCGTGGACGGCACCTTCTGGACCGCCGTCAACACCACCGACGACGTCCTCGCCGGCAGCGCCTCCTACTACGAGGCCGTCTTCGGCGCGAGCGGCAGGAACATGAGTTTCTGCCTCGGCGTGAACCCGGACTACACCAGCGCTGGCCCTTTCATCAACGCGCTGCAGGTGATCCAGCTTCACGATTCGGTGTACAACGCCACGAACTTCACTACCAGCGCCATGGGGCTCATTGCGCGTACCAAGTTTGGCTCCACCGACGGTGTTGAGAGGTACCCTAATGACACCTTCAATCGGTATTGGCAGCCATTCCCAGACAGTAAACATGCAGTCAGTAGTACCCACAATGTCACATCGGCTGATTTTTGGAATCTTCCACCTCCTGGGGTGTTTAATACAGCTTTGGTGGCAGAACAAGATGCACCCTTGGTGCTGCAATGGCCTCCAATACCTCTCCAGAATGATAGCTATTATGTTGCTCTTTATTTTGCTGATACAGTCTCTGAGAGTTCAAGGACCTTTAATGTATATATAAATGATTACAGCTTCTATGAAGGCCTAACAGTAACATCAGCTGGTCTTTCTGTCTTTGCAACACAATGGATTCTCTCAGGCTTGACCAGAGTTATTTTGGCTCCTATTTCTGGCCTTCCTCCACTTATCAATGCTGGTGAAGTCTTTGGACTTTTCCCACTAGGAGGATACACATTTCCTCGGGATGCACATGCCCTGGAAGCTATTAAGAGAAGCCTTCAAAATATACCTGATGATTGGAATGGAGATCCATGTATGCCTCATGGATATGCTTGGACTGGAGTTACATGTGATAAAGGCCAAATACCACGTGTCATCTCACTGAACTTTTCAAGTATGGGCCTCTCTGGATATCTTTCATCTGATATTGCAAGGCTCACCGCTCTGACTGATATATCTTTTGCAAACAATAGCTTGTCTGGACCTATTCCAAATCTCAGCAACCTGAGGAATCTCACAAGACTGCACCTGCAGGACAACAAATTAAATGGAACAGTACCGCAGACACTGGGGATAATCACATCTTTGCGTGAACTATTCTTGCAGAACA ATGAACTGGATGGAGCAGTTCCA CTGAACTTGCTGTTGAATCAAGGTTTGACTTACCAGTTTCTTCCGGGGAACAACTTTTTTCCAAGACCA CCTCGCTGACAATCAGGCATTTTATTTGCAACCAATTGCTCCCAACTGTACTCAACAGAATTCAAAACTAGGAGGACAATTTGTCGATTCTTTGGGTGGCTACACCAAGATTTTGTTGCCGTTCTGTACATGAAAGCAAGTTTACAGTGTCAGATGATTTGGACCTAGTCAAAGCCGTTAGCAACGGTAGTGAATAGTAGAACTGATTGTACAGTTTGTTGTAGGTTACATTGTCAATATATTCAGGAGGAAGGGTTGTGATACCCAAGAAGTGTTTGATGATCTTTCGGGACATTGCCCTTGAAACTAGAACCGGATACTGTACTGTGAGGCTGTGAAAGGGGACA CAATATATATGGTCTACGTCTTTTTTTTTCTTT                          ]
[+] EMBL AU173865             [                                                                                    AAAAAAAACAGCACACCGCCGACGAGATGCGCCTCCACCTCGCCCTCCTCGCCGCGCTCCTCACCCTCGCCGCCGCCGCCCAGCCGCCATTCCGCGGNTACTACTACCTGCTCGACTGCGGCGCCGCGGCGTCCACCACCGACAGCCGGGGCCTCGAGTGGCTCCCCGATGGCGGCTACGTCACCGGCGGCGAGCCCCACCAGCTCCCCGACCAGGGCCTCCTCGACCCGGCGCTCGCCACCCGCCGTGACTTCCCGCACGAGCCCGGGAAGAAGTTCTGCTACGAGCTCCCCGTCGACCGCAACCGCCGNTACCTGCTCCGCCCCACCTTCTTCTACGGGGCCTCCTCGCCGCCGCCGCCCGTNTTCGACCTTATCGNGGACGGCACCTTCTGGACCGCCGTCAACACCACCGACGACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CA762211             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    cTCATCTGATATTGCAAGGCTCACCGCTCTGCATGATATATCTTTTGCAAACAATAGCTTGTCTGGACCTATTCCAAATCTCAGCAACCTTAGGAATCTCACAAGACTGCACCTGCAGGACAACAAATTAAATGGACCAGTACCGCAGACACTGGGGATAATCACATCTTTGCGTGAACTATTCTTGCAGAACA ATGAACTGGATGGAGCAGTTCCA CTGAACTTGCTGTTGAATCAAGGTTTGACTTACCAGTTTCTTCCGGGGAACAACTTTTTTCCAAGACCA CCTCGCTGACAATCAGGCATTTTATTTGCAACCAATTGCTCCCAACTGTACTCAACAGAATTCAAAACTAGGAGGACAGTTTGTCGATTCTTTGGGTGGCTACACCAAGATTTTGTTGCCGTTCTGTACATGAAAGCAAGTTTACAGTGTCAGATGATTTGGACCTAGTCAAAGCCG  AGCAACGGCAGTGAATAGTAGAACTGATTGTACAGTTTGTTGTAGGTTACATTGTCAATATATTCAGGAGGAAGGGTTGTGATACCCAAGAAGTGTTTGATGATCTTTCGGGACATTGCCCTTGAAACTAGAACCGGATACTGTACTGTGAGGCTGTGAAAGGGGACA CAATATATATGGTCTACGTCTTTTTT    TTTAAAAAAAAAAA               ]
[+] EMBL CB634012             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AAATGGAACAGTACCGCAGACACTGGGGATAATCACATCTTTGCGTGAACTATTCTTGCAGAACA ATGAACTGGATGGAGCAGTTCCA CTGAACTTGCTGTTGAATCAAGGTTTGACTTACCAGTTTCTTCCGGGGAACAACTTTTTTCCAAGACCA CCTCGCTGACAATCAGGCATTTTATTTGCAACCAATTGCTCCCAACTGTACTCAACAGAATTCAAAACTAGGAGGACAGTTTGTCGATTCTTGGTGTAGCCACCCAAAGATTTTGTTGCCGTTCTGTACATGAAAGCAAGTTTACAGTGTCAGATGATTTGGACCTAGTCAAAGCCG  AGCAACGGCAGTGAATAGTAGAACTGATTGTACAGTTTGTTGTAGGTTACATTGTCAATATATTCAGGAGGAAGGGTTGTGATACCCAAGAAGTGTTTGATGATCTTTCGGGACATTGCCCTTGAAACTAGAACCGGATACTGTACTGTGAGGCTGTGAAAGGGGACA CAATATATATGGTCTACGTC                                       ]
[+] EMBL CA766316             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ATCTTTGCGTGAACNCTTCTTGCAGAACA ATGGACTGGATGGAGCAGTTCCA CTGAACTTGCTGTTGAAT AAGGTTTGACTTACCAGTTTCTTCCGGGGAACAACTTTTTTCCAAGACCA CCTCGCTGACAATCAGGCATTTTATTTGCAACCAATTGCTCCCAACTGTACTCAACAGAATTCAAAACTAGGAGGACAGTTTGTCGATTCTTTGGGTGGCTACACCAAGATTTTGTTGCCGTTCTGTACATGAAAGCAAGTTTACAGTGTCAGATGATTTGGACCTAGTCAAAGCCG  AGCAACGGCAGTGAATAGTAGAACTGATTGTACAGTTTGTTGTAGGTTGCATTGTCAATATATTCAGGAGGAAGGGTTGTGATACCCAAGAAGTGTTTGATGATCCTTCGGGACATTGCCCTTGAAACTAGAACCGGATACTGTACTGTGAGGCTGTGAAAGGGGACA CAATATATATGGTCTACGTCT                                      ]
[+] EMBL BQ908961             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TCTTTGCGTGAACTATTCTTGCAGAACACATGAACTGGATGGAGCAGTTCCACCTGAACTTGCTGTTGAATCAAGGTTTGACTTACCAGTTTCTTCCGGGGAACAACTTTTTTCCAAGACCACCCTCGCTGACAATCAGGCATTTTATTTGCAACCCATTGCTCCCAACTGTACTCAACAGAATTCAAAACTAGGAGGACAGTTTGTCGATTCTTTGGGTGGCTACACCAAGATTTTGTTGCCGTTCTGTACATGAAAGCAAGTTTACAGTGTCAGATGATTTGGACCTAGTCAAAGCCGTTAGCAACGGCAGTGAATAGTAGAACTGATTGTACAGTTTGTTGTAGGTTACATTGTCAATATATTCAGGAGGAAGGGTTGTGATACCCAAGAAGTGTTTGATGATCTTTCGGGACATTGCCCTTGAAACTAGAACCGGATACTGTACTGTGAGGCTGTGAAAGGGGACACCAATATATATGGTCTACGTCTTTTTCTTTTTTCAAAAAAAAAA                ]
[+] EMBL AU173866             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TTCCGGGGAACAACTTTTTTCCAAGACCA CCTCGCTGACAATCAGGCATTTTATTTGCAACCAATTGCTCCCAACTGTACTCAACAGAATTCAAAACTAGGAGGNCAATTTGTCGATTCTTTGGGTGGCTACACCAAGATTTTGTTGCCGTTCTGTACATGAAAGCAAGTTTACAGTGTCAGATGATTTGGACCTAGTCAAAGCCGTTAGCANCGGTAGTGAATAGTAGAACTGATTGTACAGTTTGTTGTAGGTTACATTGTCAATATATTCAGGAGGAAGGGTTGTGATNCCCAANAAGTGTTTGATGATCTTTCGGGACATTGCCCTTGAAACTAGAACCGGATACTGTACTGTGAGGCTGTGAAAGGGGACN CAATATATATGGTCTACGTCTTTTTTTTTCTTTTTGGTGCTAAAAAAAAAAAAAAAAAA]




>consensus_9947#0
CAGAGTCAACCACGCCCGCACAACGCGAAAACACCGCGTTTCCCCCACCATTTCCGCCCG
AAATCAACCGGGCCAAGAAAAAAAAAAAAAAACAGCACACCGCCGACGAGATGCGCCTCC
ACCTCGCCCTCCTCGCCGCGCTCCTCACCCTCGCCGCCGCCGCCCAGCCGCCATTCCGCG
GCTACTACTACCTGCTCGACTGCGGCGCCGCGGCGTCCACCACCGACAGCCGCGGCCTCG
AGTGGCTCCCCGATGGCGGCTACGTCACCGGCGGCGAGCCCCACCAGCTCCCCGACCAGG
GCCTCCTCGACCCGGCGCTCGCCACCCGCCGTGACTTCCCGCACGAGCCCGGGAAGAAGT
TCTGCTACGAGCTCCCCGTCGACCGCAACCGCCGCTACCTGCTCCGCCCCACCTTCTTCT
ACGGGGCCTCCTCGCCGCCGCCGCCCGTCTTCGACCTCATCGTGGACGGCACCTTCTGGA
CCGCCGTCAACACCACCGACGACGTCCTCGCCGGCAGCGCCTCCTACTACGAGGCCGTCT
TCGGCGCGAGCGGCAGGAACATGAGTTTCTGCCTCGGCGTGAACCCGGACTACACCAGCG
CTGGCCCTTTCATCAACGCGCTGCAGGTGATCCAGCTTCACGATTCGGTGTACAACGCCA
CGAACTTCACTACCAGCGCCATGGGGCTCATTGCGCGTACCAAGTTTGGCTCCACCGACG
GTGTTGAGAGGTACCCTAATGACACCTTCAATCGGTATTGGCAGCCATTCCCAGACAGTA
AACATGCAGTCAGTAGTACCCACAATGTCACATCGGCTGATTTTTGGAATCTTCCACCTC
CTGGGGTGTTTAATACAGCTTTGGTGGCAGAACAAGATGCACCCTTGGTGCTGCAATGGC
CTCCAATACCTCTCCAGAATGATAGCTATTATGTTGCTCTTTATTTTGCTGATACAGTCT
CTGAGAGTTCAAGGACCTTTAATGTATATATAAATGATTACAGCTTCTATGAAGGCCTAA
CAGTAACATCAGCTGGTCTTTCTGTCTTTGCAACACAATGGATTCTCTCAGGCTTGACCA
GAGTTATTTTGGCTCCTATTTCTGGCCTTCCTCCACTTATCAATGCTGGTGAAGTCTTTG
GACTTTTCCCACTAGGAGGATACACATTTCCTCGGGATGCACATGCCCTGGAAGCTATTA
AGAGAAGCCTTCAAAATATACCTGATGATTGGAATGGAGATCCATGTATGCCTCATGGAT
ATGCTTGGACTGGAGTTACATGTGATAAAGGCCAAATACCACGTGTCATCTCACTGAACT
TTTCAAGTATGGGCCTCTCTGGATATCTTTCATCTGATATTGCAAGGCTCACCGCTCTGA
CTGATATATCTTTTGCAAACAATAGCTTGTCTGGACCTATTCCAAATCTCAGCAACCTGA
GGAATCTCACAAGACTGCACCTGCAGGACAACAAATTAAATGGAACAGTACCGCAGACAC
TGGGGATAATCACATCTTTGCGTGAACTATTCTTGCAGAACAATGAACTGGATGGAGCAG
TTCCACTGAACTTGCTGTTGAATCAAGGTTTGACTTACCAGTTTCTTCCGGGGAACAACT
TTTTTCCAAGACCACCTCGCTGACAATCAGGCATTTTATTTGCAACCAATTGCTCCCAAC
TGTACTCAACAGAATTCAAAACTAGGAGGACAGTTTGTCGATTCTTTGGGTGGCTACACC
AAGATTTTGTTGCCGTTCTGTACATGAAAGCAAGTTTACAGTGTCAGATGATTTGGACCT
AGTCAAAGCCGTTAGCAACGGCAGTGAATAGTAGAACTGATTGTACAGTTTGTTGTAGGT
TACATTGTCAATATATTCAGGAGGAAGGGTTGTGATACCCAAGAAGTGTTTGATGATCTT
TCGGGACATTGCCCTTGAAACTAGAACCGGATACTGTACTGTGAGGCTGTGAAAGGGGAC
ACAATATATATGGTCTACGTCTTTTTTTTTCTTTAAAAAAAAAAAAAAAAAAAAAAAAAA
clustalw multiple alignements is not computed in this case