Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9957 cluster # 9957       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9957#0 length = 2111 sequences # 6  
consensus_9957#1 length = 800 sequences # 1  

consensusID : consensus_9957#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 2111
fasta sequence
                              [CACAGGGTAAAATCTCCTCCCTTCCGTCTGCATTCCTTCCTCCATTATTTCTCCATCCCTTTCCCCTCTCCTCCTCTCCTCTACCTTCTCTCTAAAAGACTGGATACAGAACAAAAAAAAGGGAAAAAACAGAAAGAAAGGAATGATAGAAGAACACCTACCAAGCAAGTCTTGGTCTTTGAGTTCATGGGCTGTGGAATTGTTCCCAGGAATCCCCTCTGGCTCTGAAAAGATTCACACCGAGCAACAGTTCTTTGATTTTTTTCCCCCTTTGTTTTGCTGAAGAATTGCTTGTACAGAACTGCTTCTTTCCTGTTTCCGCTTGGTTTTCCGGTGTTTATTTTGTTGGAATTTTCTTGGGCCCTTTCTTCTTCGCTTGTGGAGGCGAGGGGAGAAGAGAGGCATGGGAAAGCAAGGACCTTGCCGTCATTGCGGAGTCACCAGTACTCCTCTCTGGAGAAATGGGCCACCAGATAAGCCAGTGCTCTGCAATGCATGTGGCTCAAGATGGAGAACTAAGGGTTCGCTGACGAATTACACACCAATGCATGCTCGGGATGATATTGATGCTGAGGAACCTAGAGCTAGCAAGCTGAAACCTCCAACATTGAAGCTGAAGGAACAGAAGCAACTGAAGAAAAATCCAAGCCACATCACAATGGAGAATGGACCATTTTCTGATCAAAACTTCCGTAAGATGGGAGATCCTGACCTAAGTAATCGATCTGGTTCTGGATCAGCACTATCATACTCAGAGAGTTGTGCCCCCTATGGCACTGCTGATGCAAGTGAAATGACTGCTTCAGCACAATCACATGCTTGGGAATCACTTGTGCCATCAAAGAGAAGGAGTTGTGTCACTCGGCCTAAGCCTTCACAAATGGAAAAACTTGCAAAGGATCTTAATTCCATAATGCATGAAGAGCAGCTACTTTACCTTTCAGGATCCTCAGAGGAGGATCTAATTTACCATAGTGCAACTCCTGTGGATTCCTTTGAGATGGGATATGGAAGTATGCTTCTCAGACCAAATTCAAAATCACTGGAGGAAGAATCAGAAGCAAGCTCTATTCCTGCTGATAATAAGTCATATATTACTAGTGAATCTTACTCAGGGTCGGTCTCATTTGTATATAGTGAAAGCAAGGCAACAAGCAACCAAAATGTTATAACTGAACAGCCAAAGAAGTTTCTGGTGCAAACATCAGATAATGCTAGAAGGGCTAATCTCCATACTGAAAATCAGGATACTCTGGAGAATGCAAACTCACCTTTAGTTTCCCTACATATGGAGGGAAAAGACAGTGAAGAAACAAGAGTAAAGACCAGTGCTTCAAATCGCCTTACAAAGTCCACCATGAATCCTCTGAAAAGGCCGCATGACACCCACTTCCAAAGCTCCGTAGAACTAAGAGGAACCATGAGGAGTCCTAAAAGAGTTTCTAAATATGGTGATGCTATGGGTCTAAAGTGCCAAGCGTCGTTTATGCCGAAACCAGGCAATGGCAAAGATTTAGCCTGCAGTGACAGAGCACTTAACTTATTCATGTTACCCCCGGATAAACTATCCATGCTGGTTCCTCCTCAGTATGCCAACACTGATTCTGATCAAGACCTGTTGCTGGATGTTCCTCTTAATGCTCGGCACCCAGAGGCCGAGCTTCTTTGCCAGCCATCTCAACTGAGCTCAGTAGCCCACAGCTCCACCTCAGAGGCTGGGAATGCCGGAGGAGAGGGGCGCCTTAAGCAGCCCTAGTTCCAGTTCCAGTTAACAAGCAACTTAGGAACAGGAAGTAGCTGTAGTTTACTTTAGTTTCCCTGGATCATGGTTCCCTTTATTTACCGGCCACTGATGGGGCGTTCTGCGGTTTGTTCATGCTCTTATCGTCGTCGCCCTGGTTTACTAGGCAATGTGCGTCTGCCAAGTTGGCAAAAATTGTGTGTTCAGCTAACACTTCTAGCTGTGCTTTTGGAGTAGACTTGTGCTTGTTTGTAGCATATGGCTTTTGGAGAAGGTATATAACTCAACATGGCTGTATGGAAAAGAGGTAATCTCCTTATGGGTAAAATGAAAAAGGAAAGAAAGATGGAAGTTATTAGGAGTTCAAAAA]

[+] EMBL CF306186             [CACAGGGTAAAATCTCCTCCCTTCCGTCTGCATTCCTTCCTCCATTATTTCTCCATCCCTTTCCCCTCTCCTCCTCTCCTCTACCTTCTCTCTAAAAGACTGGATACAGAACAAAAAAAAGGGAAAAAACAGAAAGAAAGGAATGATAGAAGAACACCTACCAAGCAAGTCTTGGTCTTTGAGTTCATGGGCTGTGGAATTGTTCCCAGGAATCCCCTCTGGCTCTGAAAAGATTCACACCGAGCAACAGTTCTTTGATTTTTTTCCCCCTTTGTTTTGCTGAAGAATTGCTTGTACAGAACTGCTTCTTTCCTGTTTCCGCTTGGTTTTCCGGTGTTTATTTTGTTGGAATTTTCTTGGGCCCTTTCTTCTTCGCTTGTGGAGGCGAGGGGAGAAGAGAGGCATGGGAAAGCAAGGACCTTGCCGTCATTGCGGAGTCACCAGTACTCCTCTCTGGAGAAATGGGCCACCAGATAAGCCAGTGCTCTGCAATGCATGTGGCTCAAGATGGAGAACTAAGGGTTCGCTGACGAATTACACACCAATGCATGCTCGGGATGATATTGATGCTGAGGAACCTAGAGCTAGCAAGCTGAAACCTCCAACATTGAAGCTGAAGGAACAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AK070729             [                                     TCCTCCATTATTTCTCCATCCCTTTCCCCTCTCCTCCTCTCCTCTACCTTCTCTCTAAAAGACTGGATACAGAACAAAAAAAAGGGAAAAAACAGAAAGAAAGGAAAGAAAGAAGAACACCTACCAAGCAAGTCTTGGTCTTTGAGTTCATGGGCTGTGGAATTGTTCCCAGGAATCCCCTCTGGCTCTGAAAAGATTCACACCGAGCAACAGTTCTTTGATTTTTTTCCCCCTTTGTTTTGCTGAAGAATTGCTTGTACAGAACTGCTTCTTTCCTGTTTCCGCTTGGTTTTCCGGTGTTTATTTTGTTGGAATTTTCTTGGGCCCTTTCTTCTTCGCTTGTGGAGGCGAGGGGAGAAGAGAGGCATGGGAAAGCAAGGACCTTGCCGTCATTGCGGAGTCACCAGTACTCCTCTCTGGAGAAATGGGCCACCAGATAAGCCAGTGCTCTGCAATGCATGTGGCTCAAGATGGAGAACTAAGGGTTCGCTGACGAATTACACACCAATGCATGCTCGGGATGATATTGATGCTGAGGAACCTAGAGCTAGCAAGCTGAAACCTCCAACATTGAAGCTGAAGGAACAGAAGCAACTGAAGAAAAATCCAAGCCACATCACAATGGAGAATGGACCATTTTCTGATCAAAACTTCCGTAAGATGGGAGATCCTGACCTAAGTAATCGATCTGGTTCTGGATCAGCACTATCATACTCAGAGAGTTGTGCCCCCTATGGCACTGCTGATGCAAGTGAAATGACTGCTTCAGCACAATCACATGCTTGGGAATCACTTGTGCCATCAAAGAGAAGGAGTTGTGTCACTCGGCCTAAGCCTTCACAAATGGAAAAACTTGCAAAGGATCTTAATTCCATAATGCATGAAGAGCAGCTACTTTACCTTTCAGGATCCTCAGAGGAGGATCTAATTTACCATAGTGCAACTCCTGTGGATTCCTTTGAGATGGGATATGGAAGTATGCTTCTCAGACCAAATTCAAAATCACTGGAGGAAGAATCAGAAGCAAGCTCTATTCCTGCTGATAATAAGTCATATATTACTAGTGAATCTTACTCAGGGTCGGTCTCATTTGTATATAGTGAAAGCAAGGCAACAAGCAACCAAAATGTTATAACTGAACAGCCAAAGAAGTTTCTGGTGCAAACATCAGATAATGCTAGAAGGGCTAATCTCCATACTGAAAATCAGGATACTCTGGAGAATGCAAACTCACCTTTAGTTTCCCTACATATGGAGGGAAAAGACAGTGAAGAAACAAGAGTAAAGACCAGTGCTTCAAATCGCCTTACAAAGTCCACCATGAATCCTCTGAAAAGGCCGCATGACACCCACTTCCAAAGCTCCGTAGAACTAAGAGGAACCATGAGGAGTCCTAAAAGAGTTTCTAAATATGGTGATGCTATGGGTCTAAAGTGCCAAGCGTCGTTTATGCCGAAACCAGGCAATGGCAAAGATTTAGCCTGCAGTGACAGAGCACTTAACTTATTCATGTTACCCCCGGATAAACTATCCATGCTGGTTCCTCCTCAGTATGCCAACACTGATTCTGATCAAGACCTGTTGCTGGATGTTCCTCTTAATGCTCGGCACCCAGAGGCCGAGCTTCTTTGCCAGCCATCTCAACTGAGCTCAGTAGCCCACAGCTCCACCTCAGAGGCTGGGAATGCCGGAGGAGAGGGGCGCCTTAAGCAGCCCTAGTTCCAGTTCCAGTTAACAAGCAACTTAGGAACAGGAAGTAGCTGTAGTTTACTTTAGTTTCCCTGGATCATGGTTCCCTTTATTTACCGGCCACTGATGGGGCGTTCTGCGGTTTGTTCATGCTCTTATCGTCGTCGCCCTGGTTTACTAGGCAATGTGCGTCTGCCAAGTTGGCAAAAATTGTGTGTTCAGCTAACACTTCTAGCTGTGCTTTTGGAGTAGACTTGTGCTTGTTTGTAGCATATGGCTTTTGGAGAAGGTATATAACTCAACATGGCTGTATGGAAAAGAGGTAATCTCCTTATGGGTAAAATGAAAAAGGAAAGAAAGATGGAAGTT                ]
[+] EMBL BP184757             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ACTCAGAGAGTTGTGCCCCCTATGGCACTGCTGATGCAAGTGAAATGACTGCTTCAGCACAATCACATGCTTGGGAATCACTTGTGCCATCAAAGAGAAGGAGTTGTGTCACTCGGCCTAAGCCTTCACAAATGGAAAAACTTGCAAAGGATCTTAATTCCATAATGCATGAAGAGCAGCTACTTTACCTTTCAGGATCCTCAGAGGAGGATCTAATTTACCATAGTGCAACTCCTGTGGATTCCTTTGAGATGGGATATGGAAGTATGCTTCTCAGACCAAATTCAAAATCACTGGAGGAAGAATCAGAAGCAAGCTCTATTCCTGCTGATAATAAGTCATATATTACTAGTGAATCTTACTCAGGGTCGGTCTCATTTGTATATAGTGAAAGCAAGGCAACAAGCAACCAAAATGTTATAACTGAACAGCCAAAGAAGTTTCTGGTGCAAACATCAGATAATGCTAGAAGGGCTAATCTCCATACTGAAAATCAGGATACTCTGGAGAATGCAAACTCACCTTTAGTTTCCCTACATATGGAGGGAAAAGACAGTGAAGAAACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BI806527             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CATGTAACCCCCGGATAAACTATCCATGCTGGTTCCTCCTCAGTATGCCAACACTGATTCTGATCAAGACCTGTTGCTGGATGTTCCTCTTAATGCTCGGCACCCAGA GCCGAGCTTCTTTGCCAGCCATCTCAACTGAGCTCAGTAGCCCACAGCTCCACCTCAGAGGCTGGGAATGCCGGAGGAGAGGGGCGCCTTAAGCAGCCCTAGTTCCAGTTCCAGTTAACAAGCAACTTAGGAACAGGAAGTAGCTGTAGTTTACTTTAGTTTCCCTGGATCATGGTTCCCTTTATTTACCGGCCACTGATGGGGCGTTCTGCGGTTTGTTCATGCTCTTATCGTCGTCGCCCTGGTTTACTAGGCAATGTGCGTCTGCCAAGTTGGCAAAAATTGTGTGTTCAGCTAACACTTCTAGCTGTGCTTTTGGAGTAGACTTGTGCTTGTTTGTAGCATATGGCTTTTGGAGAAGGTATATAACTCAACATGGCTGTATGGAAAAGAGGTAATCTCCTTATGGGTAAAATGAAAAAGGAAAGAAAGATGGAAGTTATTAGGAGTTCAAAAA]
[+] EMBL OSC28851             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CAGTAGCCCACAGCTCCACCTCAGAGGCTGGGAATGCCGGAGGAGAGGGGCGCCTTAAGCAGCCCTAGTTCCAGTTCCAGTTAACAAGCAACTTAGGAACAGGAAGTAGCTGTAGTTTACTTTAGTTTCCCTGGATCATGGTTCCCTTTATTTACCGGCCACTGATGGGGCGTTCTGCGGTTTGTTCATGCTCTTATCGTCGTCGNCCTGGTTTACTAGGCAATGTGCGTNTGCCAAGTTGGCAAAAATTGTGTGTTCAGCTAACACTTCTAGCTGTNCTTTTGGAGTAGACTTG                                                                                                                                ]
[+] EMBL BI812862             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TAGTTTACTTTAGTTTCCCTGGATCATGGTTCCC TTATTTACCGGCCACTGATGGGGC TTCT CGGTTTGTTCATGCTCTTATCGTCGTCGCCCTGGTTTACTA GCCATGTGCGTCTGCCCAGTTGGCCAAAATTGTGTGTTCAGCTAACACTTCTAGCTGTGCTTTTGGAGTAGACTTGTGCTTGTTTGTAGCATATGGCTTTTGGAGAAGGTATATAACTC ACATGGCTGTATGGAAAAGAGGTACTCTCCTTATGGGTAAAATGAAAAAGGAAAGAAAGATGGAAGTTATTAGGAAAAAAAAAA]


>consensus_9957#0 CACAGGGTAAAATCTCCTCCCTTCCGTCTGCATTCCTTCCTCCATTATTTCTCCATCCCT TTCCCCTCTCCTCCTCTCCTCTACCTTCTCTCTAAAAGACTGGATACAGAACAAAAAAAA GGGAAAAAACAGAAAGAAAGGAATGATAGAAGAACACCTACCAAGCAAGTCTTGGTCTTT GAGTTCATGGGCTGTGGAATTGTTCCCAGGAATCCCCTCTGGCTCTGAAAAGATTCACAC CGAGCAACAGTTCTTTGATTTTTTTCCCCCTTTGTTTTGCTGAAGAATTGCTTGTACAGA ACTGCTTCTTTCCTGTTTCCGCTTGGTTTTCCGGTGTTTATTTTGTTGGAATTTTCTTGG GCCCTTTCTTCTTCGCTTGTGGAGGCGAGGGGAGAAGAGAGGCATGGGAAAGCAAGGACC TTGCCGTCATTGCGGAGTCACCAGTACTCCTCTCTGGAGAAATGGGCCACCAGATAAGCC AGTGCTCTGCAATGCATGTGGCTCAAGATGGAGAACTAAGGGTTCGCTGACGAATTACAC ACCAATGCATGCTCGGGATGATATTGATGCTGAGGAACCTAGAGCTAGCAAGCTGAAACC TCCAACATTGAAGCTGAAGGAACAGAAGCAACTGAAGAAAAATCCAAGCCACATCACAAT GGAGAATGGACCATTTTCTGATCAAAACTTCCGTAAGATGGGAGATCCTGACCTAAGTAA TCGATCTGGTTCTGGATCAGCACTATCATACTCAGAGAGTTGTGCCCCCTATGGCACTGC TGATGCAAGTGAAATGACTGCTTCAGCACAATCACATGCTTGGGAATCACTTGTGCCATC AAAGAGAAGGAGTTGTGTCACTCGGCCTAAGCCTTCACAAATGGAAAAACTTGCAAAGGA TCTTAATTCCATAATGCATGAAGAGCAGCTACTTTACCTTTCAGGATCCTCAGAGGAGGA TCTAATTTACCATAGTGCAACTCCTGTGGATTCCTTTGAGATGGGATATGGAAGTATGCT TCTCAGACCAAATTCAAAATCACTGGAGGAAGAATCAGAAGCAAGCTCTATTCCTGCTGA TAATAAGTCATATATTACTAGTGAATCTTACTCAGGGTCGGTCTCATTTGTATATAGTGA AAGCAAGGCAACAAGCAACCAAAATGTTATAACTGAACAGCCAAAGAAGTTTCTGGTGCA AACATCAGATAATGCTAGAAGGGCTAATCTCCATACTGAAAATCAGGATACTCTGGAGAA TGCAAACTCACCTTTAGTTTCCCTACATATGGAGGGAAAAGACAGTGAAGAAACAAGAGT AAAGACCAGTGCTTCAAATCGCCTTACAAAGTCCACCATGAATCCTCTGAAAAGGCCGCA TGACACCCACTTCCAAAGCTCCGTAGAACTAAGAGGAACCATGAGGAGTCCTAAAAGAGT TTCTAAATATGGTGATGCTATGGGTCTAAAGTGCCAAGCGTCGTTTATGCCGAAACCAGG CAATGGCAAAGATTTAGCCTGCAGTGACAGAGCACTTAACTTATTCATGTTACCCCCGGA TAAACTATCCATGCTGGTTCCTCCTCAGTATGCCAACACTGATTCTGATCAAGACCTGTT GCTGGATGTTCCTCTTAATGCTCGGCACCCAGAGGCCGAGCTTCTTTGCCAGCCATCTCA ACTGAGCTCAGTAGCCCACAGCTCCACCTCAGAGGCTGGGAATGCCGGAGGAGAGGGGCG CCTTAAGCAGCCCTAGTTCCAGTTCCAGTTAACAAGCAACTTAGGAACAGGAAGTAGCTG TAGTTTACTTTAGTTTCCCTGGATCATGGTTCCCTTTATTTACCGGCCACTGATGGGGCG TTCTGCGGTTTGTTCATGCTCTTATCGTCGTCGCCCTGGTTTACTAGGCAATGTGCGTCT GCCAAGTTGGCAAAAATTGTGTGTTCAGCTAACACTTCTAGCTGTGCTTTTGGAGTAGAC TTGTGCTTGTTTGTAGCATATGGCTTTTGGAGAAGGTATATAACTCAACATGGCTGTATG GAAAAGAGGTAATCTCCTTATGGGTAAAATGAAAAAGGAAAGAAAGATGGAAGTTATTAG GAGTTCAAAAA



consensusID : consensus_9957#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 800
fasta sequence
                              [ACAAGAGTAAAGACCAGTGCTTCAAATCGCCTTACAAAGTCCACCATGAATCCTCTGAAAAGGCCTCATGACACGCACTTCCAAAGCTCCGTAGGTCAGCAGTTTCTGACCTGCATATACTGTTACTTATATTTGGAAAAAAAACAAATCCTATATATTCATTTCCTATTTCGTCCTTAGCTTAATGTAAGTGAAACGGAGAAACCTTCTAACTTTATTATTTTTATCTATTCTTTCTTTTTGTGCATACAGAACTAAGAGGAACCATGAGGAGTCCTAAAAGAGTTTCTAAATATGGTGATGCTATGGGTCTAAAGTGCCAAGCATCGTTTATGCCGAAACCAGGCAATGGCAAAGATTTAGCCTGCAGTGACAGAGCACTTAACTTATTCATGTTACCCCCGGATAAACTATCCATGCTGGTTCCTCCTCAGTATGCCAACAATGATTCTGATCAAGACCTGTTGCTGGATGTTCCTCTTAATGCTCGGCACCCAGAGGCCGAGCTTCTTTGCCAGCCATCTCAACTGAGCTCAGTAGCCCACAGCTCCACCTCAGAGGGTGGGAATGCCGGAGGAGAGGGGCGCCTTAAGCAGCCCTAGTTNCAGGTTCCAGTTAACAAGCAACTTAGGAACAGGAAGTAGCTGTAGNTTACTTTTAGTTTCCCTGGATCATGGGTCCCTTTACTTACCGGCCACTGATGGGGGCGTTCTGCGGGTTTGNTCATGCTCTTATCGTCGTCGCCCTGGGTTACTAGGCAATGNGCGTCTGGCCAAGGTGGCAAAAATTGGGNGGTCAGC]

[+] EMBL CA765687             [ACAAGAGTAAAGACCAGTGCTTCAAATCGCCTTACAAAGTCCACCATGAATCCTCTGAAAAGGCCTCATGACACGCACTTCCAAAGCTCCGTAGGTCAGCAGTTTCTGACCTGCATATACTGTTACTTATATTTGGAAAAAAAACAAATCCTATATATTCATTTCCTATTTCGTCCTTAGCTTAATGTAAGTGAAACGGAGAAACCTTCTAACTTTATTATTTTTATCTATTCTTTCTTTTTGTGCATACAGAACTAAGAGGAACCATGAGGAGTCCTAAAAGAGTTTCTAAATATGGTGATGCTATGGGTCTAAAGTGCCAAGCATCGTTTATGCCGAAACCAGGCAATGGCAAAGATTTAGCCTGCAGTGACAGAGCACTTAACTTATTCATGTTACCCCCGGATAAACTATCCATGCTGGTTCCTCCTCAGTATGCCAACAATGATTCTGATCAAGACCTGTTGCTGGATGTTCCTCTTAATGCTCGGCACCCAGAGGCCGAGCTTCTTTGCCAGCCATCTCAACTGAGCTCAGTAGCCCACAGCTCCACCTCAGAGGGTGGGAATGCCGGAGGAGAGGGGCGCCTTAAGCAGCCCTAGTTNCAGGTTCCAGTTAACAAGCAACTTAGGAACAGGAAGTAGCTGTAGNTTACTTTTAGTTTCCCTGGATCATGGGTCCCTTTACTTACCGGCCACTGATGGGGGCGTTCTGCGGGTTTGNTCATGCTCTTATCGTCGTCGCCCTGGGTTACTAGGCAATGNGCGTCTGGCCAAGGTGGCAAAAATTGGGNGGTCAGC]


>consensus_9957#1 ACAAGAGTAAAGACCAGTGCTTCAAATCGCCTTACAAAGTCCACCATGAATCCTCTGAAA AGGCCTCATGACACGCACTTCCAAAGCTCCGTAGGTCAGCAGTTTCTGACCTGCATATAC TGTTACTTATATTTGGAAAAAAAACAAATCCTATATATTCATTTCCTATTTCGTCCTTAG CTTAATGTAAGTGAAACGGAGAAACCTTCTAACTTTATTATTTTTATCTATTCTTTCTTT TTGTGCATACAGAACTAAGAGGAACCATGAGGAGTCCTAAAAGAGTTTCTAAATATGGTG ATGCTATGGGTCTAAAGTGCCAAGCATCGTTTATGCCGAAACCAGGCAATGGCAAAGATT TAGCCTGCAGTGACAGAGCACTTAACTTATTCATGTTACCCCCGGATAAACTATCCATGC TGGTTCCTCCTCAGTATGCCAACAATGATTCTGATCAAGACCTGTTGCTGGATGTTCCTC TTAATGCTCGGCACCCAGAGGCCGAGCTTCTTTGCCAGCCATCTCAACTGAGCTCAGTAG CCCACAGCTCCACCTCAGAGGGTGGGAATGCCGGAGGAGAGGGGCGCCTTAAGCAGCCCT AGTTNCAGGTTCCAGTTAACAAGCAACTTAGGAACAGGAAGTAGCTGTAGNTTACTTTTA GTTTCCCTGGATCATGGGTCCCTTTACTTACCGGCCACTGATGGGGGCGTTCTGCGGGTT TGNTCATGCTCTTATCGTCGTCGCCCTGGGTTACTAGGCAATGNGCGTCTGGCCAAGGTG GCAAAAATTGGGNGGTCAGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9957#0      CACAGGGTAAAATCTCCTCCCTTCCGTCTGCATTCCTTCCTCCATTATTTCTCCATCCCT 60
consensus_9957#1      ------------------------------------------------------------
                                                                                  

consensus_9957#0      TTCCCCTCTCCTCCTCTCCTCTACCTTCTCTCTAAAAGACTGGATACAGAACAAAAAAAA 120
consensus_9957#1      ------------------------------------------------------------
                                                                                  

consensus_9957#0      GGGAAAAAACAGAAAGAAAGGAATGATAGAAGAACACCTACCAAGCAAGTCTTGGTCTTT 180
consensus_9957#1      ------------------------------------------------------------
                                                                                  

consensus_9957#0      GAGTTCATGGGCTGTGGAATTGTTCCCAGGAATCCCCTCTGGCTCTGAAAAGATTCACAC 240
consensus_9957#1      ------------------------------------------------------------
                                                                                  

consensus_9957#0      CGAGCAACAGTTCTTTGATTTTTTTCCCCCTTTGTTTTGCTGAAGAATTGCTTGTACAGA 300
consensus_9957#1      ------------------------------------------------------------
                                                                                  

consensus_9957#0      ACTGCTTCTTTCCTGTTTCCGCTTGGTTTTCCGGTGTTTATTTTGTTGGAATTTTCTTGG 360
consensus_9957#1      ------------------------------------------------------------
                                                                                  

consensus_9957#0      GCCCTTTCTTCTTCGCTTGTGGAGGCGAGGGGAGAAGAGAGGCATGGGAAAGCAAGGACC 420
consensus_9957#1      ------------------------------------------------------------
                                                                                  

consensus_9957#0      TTGCCGTCATTGCGGAGTCACCAGTACTCCTCTCTGGAGAAATGGGCCACCAGATAAGCC 480
consensus_9957#1      ------------------------------------------------------------
                                                                                  

consensus_9957#0      AGTGCTCTGCAATGCATGTGGCTCAAGATGGAGAACTAAGGGTTCGCTGACGAATTACAC 540
consensus_9957#1      ------------------------------------------------------------
                                                                                  

consensus_9957#0      ACCAATGCATGCTCGGGATGATATTGATGCTGAGGAACCTAGAGCTAGCAAGCTGAAACC 600
consensus_9957#1      ------------------------------------------------------------
                                                                                  

consensus_9957#0      TCCAACATTGAAGCTGAAGGAACAGAAGCAACTGAAGAAAAATCCAAGCCACATCACAAT 660
consensus_9957#1      ------------------------------------------------------------
                                                                                  

consensus_9957#0      GGAGAATGGACCATTTTCTGATCAAAACTTCCGTAAGATGGGAGATCCTGACCTAAGTAA 720
consensus_9957#1      ------------------------------------------------------------
                                                                                  

consensus_9957#0      TCGATCTGGTTCTGGATCAGCACTATCATACTCAGAGAGTTGTGCCCCCTATGGCACTGC 780
consensus_9957#1      ------------------------------------------------------------
                                                                                  

consensus_9957#0      TGATGCAAGTGAAATGACTGCTTCAGCACAATCACATGCTTGGGAATCACTTGTGCCATC 840
consensus_9957#1      ------------------------------------------------------------
                                                                                  

consensus_9957#0      AAAGAGAAGGAGTTGTGTCACTCGGCCTAAGCCTTCACAAATGGAAAAACTTGCAAAGGA 900
consensus_9957#1      ------------------------------------------------------------
                                                                                  

consensus_9957#0      TCTTAATTCCATAATGCATGAAGAGCAGCTACTTTACCTTTCAGGATCCTCAGAGGAGGA 960
consensus_9957#1      ------------------------------------------------------------
                                                                                  

consensus_9957#0      TCTAATTTACCATAGTGCAACTCCTGTGGATTCCTTTGAGATGGGATATGGAAGTATGCT 1020
consensus_9957#1      ------------------------------------------------------------
                                                                                  

consensus_9957#0      TCTCAGACCAAATTCAAAATCACTGGAGGAAGAATCAGAAGCAAGCTCTATTCCTGCTGA 1080
consensus_9957#1      ------------------------------------------------------------
                                                                                  

consensus_9957#0      TAATAAGTCATATATTACTAGTGAATCTTACTCAGGGTCGGTCTCATTTGTATATAGTGA 1140
consensus_9957#1      --------------------------------------------------------ACAA 4
                                                                                 *

consensus_9957#0      AAGCAAGGCAACAAGCAACCAAAATGTTATAACTGAACAGCCAAAGAAGTTTCTGGTGCA 1200
consensus_9957#1      GAGTAAAG--ACCAGTGCTTCAAATCGCCTTACAAAGTCCACCATGAATCCTCTGA---A 59
                       ** ** *  ** **      ****    * **  *     * * ***   ****    *

consensus_9957#0      AACATCAGATAATGCTAGAAGGGCTAATCTCCATACTGAAAATCAGGATACTCTGGAGAA 1260
consensus_9957#1      AAGGCCTCATGACAC-GCACTTCCAAAGCTCCGTA-----GGTCAGCAGTTTCTGACCTG 113
                      **   *  ** *  *   *    * ** **** **       **** *   ****     

consensus_9957#0      TGCAAACTCACCTTTAGTTTCCCTACATATGGAGGGAAAAGACAGTGAAGAAACAAGAGT 1320
consensus_9957#1      CATATACTG---------TTACTTATATTTGGAAAAAAAACAAATCCTATATATTCATTT 164
                         * ***          ** * ** ** ****   **** * *    * * *      *

consensus_9957#0      AAAGACCAGTGCTTCAAATCGCCTTACAAAGTCCACCATGAATCCTCTGAAAAGGCCGCA 1380
consensus_9957#1      CCTATTTCGTCCTTAGCTTAATGTAAGTGAAACGG--AGAAACCTTCTAACTTTATTATT 222
                              ** ***    *    * *   *  *    *  ** * *** *          

consensus_9957#0      TG-----ACACCCACTTCCAAAGCTCCGTAGAACTAAGAGGAACCATGAGGAGTCCTAAA 1435
consensus_9957#1      TTTATCTATTCTTTCTTTTTGTGCAT-ACAGAACTAAGAGGAACCATGAGGAGTCCTAAA 281
                      *      *  *   ***     **     *******************************

consensus_9957#0      AGAGTTTCTAAATATGGTGATGCTATGGGTCTAAAGTGCCAAGCGTCGTTTATGCCGAAA 1495
consensus_9957#1      AGAGTTTCTAAATATGGTGATGCTATGGGTCTAAAGTGCCAAGCATCGTTTATGCCGAAA 341
                      ******************************************** ***************

consensus_9957#0      CCAGGCAATGGCAAAGATTTAGCCTGCAGTGACAGAGCACTTAACTTATTCATGTTACCC 1555
consensus_9957#1      CCAGGCAATGGCAAAGATTTAGCCTGCAGTGACAGAGCACTTAACTTATTCATGTTACCC 401
                      ************************************************************

consensus_9957#0      CCGGATAAACTATCCATGCTGGTTCCTCCTCAGTATGCCAACACTGATTCTGATCAAGAC 1615
consensus_9957#1      CCGGATAAACTATCCATGCTGGTTCCTCCTCAGTATGCCAACAATGATTCTGATCAAGAC 461
                      ******************************************* ****************

consensus_9957#0      CTGTTGCTGGATGTTCCTCTTAATGCTCGGCACCCAGAGGCCGAGCTTCTTTGCCAGCCA 1675
consensus_9957#1      CTGTTGCTGGATGTTCCTCTTAATGCTCGGCACCCAGAGGCCGAGCTTCTTTGCCAGCCA 521
                      ************************************************************

consensus_9957#0      TCTCAACTGAGCTCAGTAGCCCACAGCTCCACCTCAGAGGCTGGGAATGCCGGAGGAGAG 1735
consensus_9957#1      TCTCAACTGAGCTCAGTAGCCCACAGCTCCACCTCAGAGGGTGGGAATGCCGGAGGAGAG 581
                      **************************************** *******************

consensus_9957#0      GGGCGCCTTAAGCAGCCCTAGTTCCAG-TTCCAGTTAACAAGCAACTTAGGAACAGGAAG 1794
consensus_9957#1      GGGCGCCTTAAGCAGCCCTAGTTNCAGGTTCCAGTTAACAAGCAACTTAGGAACAGGAAG 641
                      *********************** *** ********************************

consensus_9957#0      TAGCTGTAGTTTACTTT-AGTTTCCCTGGATCATGGTTCCCTTTATTTACCGGCCACTGA 1853
consensus_9957#1      TAGCTGTAGNTTACTTTTAGTTTCCCTGGATCATGGGTCCCTTTACTTACCGGCCACTGA 701
                      ********* ******* ****************** ******** **************

consensus_9957#0      TGGGG-CGTTCTGCGG-TTTGTTCATGCTCTTATCGTCGTCGCCCTGGTTTACTAGGCAA 1911
consensus_9957#1      TGGGGGCGTTCTGCGGGTTTGNTCATGCTCTTATCGTCGTCGCCCTGGGTTACTAGGCAA 761
                      ***** ********** **** ************************** ***********

consensus_9957#0      TGTGCGTCTG-CCAAGTTGGCAAAAATTGTGTGTTCAGCTAACACTTCTAGCTGTGCTTT 1970
consensus_9957#1      TGNGCGTCTGGCCAAGGTGGCAAAAATTGGGNGGTCAGC--------------------- 800
                      ** ******* ***** ************ * * *****                     

consensus_9957#0      TGGAGTAGACTTGTGCTTGTTTGTAGCATATGGCTTTTGGAGAAGGTATATAACTCAACA 2030
consensus_9957#1      ------------------------------------------------------------
                                                                                  

consensus_9957#0      TGGCTGTATGGAAAAGAGGTAATCTCCTTATGGGTAAAATGAAAAAGGAAAGAAAGATGG 2090
consensus_9957#1      ------------------------------------------------------------
                                                                                  

consensus_9957#0      AAGTTATTAGGAGTTCAAAAA 2111
consensus_9957#1      ---------------------
                                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)