These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9960#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 886 fasta sequence [AGNACAAGGGGAAAAAGATTTAGGATAATAAACGGAATTGCTCGAGGATTACAATATCTTCAAGAAGATTCTCAGCTGAGAATAATTCACCGGGACCTCAAAGCAAGCAATGTTCTATTGGACTCCGACTATACTCCTAAGATTTCGGATTTTGGTTTGGCAAGGCTATTTGGGGGTGATCAAACAAGGGAGATCACGCGCCGTGTTGTCGGAACATACGGATATATGGCGCCAGAATATGCAATGCGTGGGCACTATTCTGTAAAGTCAGATGTCTTTAGCTTTGGCATATTGATAATAGAAATTGTGACAGGAAGGAGAAGCAGTGGTTCACTCAGCTTTGATCAATCAAACGATCTCCTAAGTCTTGTATGGGAGCACTGGACCATGGGAACAATTTTGGAGATGATGGATCCATCTCTTACAAGCCATGCTCCTCGAGACCGGATGCTGAAGTGTATTCACATTGGGCTACTGTGTGTTCAAGATAACCCAGCGGATAGACCTATGATGTCAACAGTGAATGTCATGCTTAGCAGCAGCACAGTGTCTCTTCAATCTCCATCCAAGCCATCATTTTTCATTCCCAAGAGTGACACAGACTCAAATATATACTCGGAATCACACCCACTAACTTCCCAATCGACTGCCTCGACCGGTAGGTCGGGAGGGATGTCAGNTAATGACGTGTCAATTACAGAGCTTGNACCAAGATAAGGNAACCAATTCCTTTGAATTTAAGATAAGAAAATCAATGNCAACGGTAATCGATTTGGTACCTTTCANAACAAACTTCANGGAGAAGGCATAACTTGGAGGAAAAGCATTGAATTCTGAGNGCATTCTNCATTGGCTGAGTCANANTTGGGTGGTTTTGTTGGTCGAC] [+] EMBL CA764186 [AGNACAAGGGGAAAAAGATTTAGGATAATAAACGGAATTGCTCGAGGATTACAATATCTTCAAGAAGATTCTCAGCTGAGAATAATTCACCGGGACCTCAAAGCAAGCAATGTTCTATTGGACTCCGACTATACTCCTAAGATTTCGGATTTTGGTTTGGCAAGGCTATTTGGGGGTGATCAAACAAGGGAGATCACGCGCCGTGTTGTCGGAACATACGGATATATGGCGCCAGAATATGCAATGCGTGGGCACTATTCTGTAAAGTCAGATGTCTTTAGCTTTGGCATATTGATAATAGAAATTGTGACAGGAAGGAGAAGCAGTGGTTCACTCAGCTTTGATCAATCAAACGATCTCCTAAGTCTTGTATGGGAGCACTGGACCATGGGAACAATTTTGGAGATGATGGATCCATCTCTTACAAGCCATGCTCCTCGAGACCGGATGCTGAAGTGTATTCACATTGGGCTACTGTGTGTTCAAGATAACCCAGCGGATAGACCTATGATGTCAACAGTGAATGTCATGCTTAGCAGCAGCACAGTGTCTCTTCAATCTCCATCCAAGCCATCATTTTTCATTCCCAAGAGTGACACAGACTCAAATATATACTCGGAATCACACCCACTAACTTCCCAATCGACTGCCTCGACCGGTAGGTCGGGAGGGATGTCAGNTAATGACGTGTCAATTACAGAGCTTGNACCAAGATAAGGNAACCAATTCCTTTGAATTTAAGATAAGAAAATCAATGNCAACGGTAATCGATTTGGTACCTTTCANAACAAACTTCANGGAGAAGGCATAACTTGGAGGAAAAGCATTGAATTCTGAGNGCATTCTNCATTGGCTGAGTCANANTTGGGTGGTTTTGTTGGTCGAC] consensusID : consensus_9960#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 798 fasta sequence [AAGTCACAAGCCGTGTGGTAGGAACATATGGATATATGGCACCAGAGTACGCGATGCGTGGCCACTATTCTGTAAAATCAGACGTCTTTAGCTTTGGCATATTGATGATAGAAATTGTGACAGGAAGAAGAAGCAGTGGTTCATATAGCTTTGATCAATCATATGATCTCCTAAGCCGTATGGGAGCACTGGACCATGGGAACAATTTTGGAGATGATGGATCCCTCTCTTACAAGCCATGCTCCTCGAGACCAGATGCTCAAGTGTATTCACATTGGGCTACTGTGTGTTCAA-GATAACCCAGCAGATAGA-CCTATGATGTCAACAGTGAATGTCATGCTTAGCAGCAGCAC-AGTGTCTC-TTCAATCTCCATCCAAGCCATCATTTTTCATTCCCAAAAGTGACACAGACTCAAATATATACTCGGAATCACACCCACTAACTTCCCAATCGACTGCCTCGACCGGTAGGTCGGGAGGGATGTCAGTTAATGATGTGTCAATTACAGAGCTTGAACCAAGATAAGGAAACCAAATCCTTCGAATTTAAGATAAGAAAATCAGTGACAACGGTAATTGAATTGTTACTTTTAAGAAACAAACTTCAGGGAGAAGGCCATAAACTTGTAGGAGAAGCATTGAATTCTGAGTGCATTTCTCCATTGGCTGAGTCAATATTTTGGTT-GGTTTTGTTTGTTCGTACAA-AAAAAAAAAGTTTATTTTATAGGTTTGAAAATTGGGTTGGTTGCACATCCGGTTACAAAAATTTTTGTAGAAGCTATACACNCAAAAAAAAAAA] [+] EMBL OSSS25828 [AAGTCACAAGCCGTGTGGTAGGAACATATGGATATATGGCACCAGAGTACGCGATGCGTGGCCACTATTCTGTAAAATCAGACGTCTTTAGCTTTGGCATATTGATGATAGAAATTGTGACAGGAAGAAGAAGCAGTGGTTCATATAGCTTTGATCAATCATATGATCTCCTAAGCCGTATGGGAGCACTGGACCATGGGAACAATTTTGGAGATGATGGATCCCTCTCTTACAAGCCATGCTCCTCGAGACCAGATGCTCAAGTGTATTCACATTGGGCTACTGTGTGTTCAAGGATAACCCAGCAGATCGANCCTATGGTGTCAACAGTGAATATCATGCTTAGCAGCANCACAAGTGTCTCTTTCAATCCCCATCCAAGgc ] [+] EMBL CB000259 [ CCATGGGAACAATTTTGGAGATGATGGATCCCTCTCTTACAAGCCATGCTCCTCGAGACCAGATGCTCAAGTGTATTCACATTGGGCTACTGTGTGTTCAA GATAACCCAGCAGATAGA CCTATGATGTCAACAGTGAATGTCATGCTTAGCAGCAGCAC AGTGTCTC TTCAATCTCCATCCAAGCCATCATTTTTCATTCCCAAAAGTGACACAGACTCAAATATATACTCGGAATCACACCCACTAACTTCCCAATCGACTGCCTCGACCGGTAGGTCGGGAGGGATGTCAGTTAATGATGTGTCAATTACAGAGCTTGAACCAAGATAAGGAAACCAAATCCTTCGAATTTAAGATAAGAAAATCAGTGACAACGGTAATTGAATTGTTACTTTTAAGAAACAAACTTCAGGGAGAAGGCCATAAACTTGTAGGAGAAGCATTGAATTCTGAGTGCATTTCTCCATTGGCTGAGTCAATATTTTGGTT GGTTTTGTTTGTTCGTACAA AAAAAAAAA ] [+] EMBL CB000072 [ CCATGGGAACAATTTTGGAGATGATGGATCCCCCTTTTACAAGCCATGCTCCTCGAGACCAGATGCTCAAGTGTATTCACATTGGGCTACTGTGTGTTCAA GATAACCCAGCAGATAGA CCTATGATGTCAACAGTGAATGTCATGCTTAGCAGCAGCAC AGTGTCTC TTCAATCTCCATCCAAGCCATCATTTTTCATTCCCAAAAGTGACACAGACTCAAATATATACTCGGAATCACACCCACTAACTTCCCAATCGACTGCCTCGACCGGTAGGTCGGGAGGGATGTCAGTTAATGATGTGTCAATTACAGAGCTTGAACCAAGATAAGGAAACCAAATCCTTCGAATTTAAGATAAGAAAATCAGTGACAACGGTAATTGAATTGTTACTTTTAAGAAACAAACTTCAGGGAGAAGGCCATAAACTTGTAGGAGAAGCATTGAATTCTGAGTGCATTTCTCCATTGGCTGAGTCAATATTTTGGTT GGTTTTGTTTGTTCGTACAA AAAAAAAAA ] [+] EMBL OSR3365A [ TCATTCCCAAAAGTGACACAGACTCAAATATATACTCGGAATCACACCCACTAACTTCCCAATCGACTGCCTCGACCGGTAGG GGNGAGGGATGTCAGTTAATGATGTGTCAATTACAGAGCTTGAACCAAGATAAGGAAACCAAATCCTTCGAATTTAAGATAAGAAAATCAGTGACAACGGTAATTGAATTGTTACTTTTAAGAAACAAACTTCAGGGAGAAGGCCATAAACTTGTAGGAGAAGCATTGAATTCTGAGTGCATTTCTCCATTGGCTGAGTCAATATTTTGGTTGGGTTTTGTTTGTTCGGACAA GCCACCCTTGTTTATTTTATAGGTTTGAAAATTGGGTTGGTTGCACATCCGGTTACAAAAATTTTT ] [+] EMBL AU173497 [ CATTCCCAAAAGTGACACAGACTCAAATATATACTCGGAATCACACCCACTAACTTCCCAATCGACTGCCTCGACCGGTAGGTCGGGAGGGATGTCAGTTAATGATGTGTCAATTACAGAGCTTGAACCAAGATAAGGAAACCAAATCCTTCGAATTTAAGATAAGAAAATCAGTGACAACGGTAATTGAATTGTTACTTTTAAGAAACAAACTTCAGGGAGAAGGCCATAAACTTGTAGGAGAAGCATTGAATTCTGAGTGCATTTCTCCATTGGCTGAGTCAATATTTTGGTT GGTTTTGTTTGTTCGTACAAGCCCACCCTTGTTTATTTTATA GTTTGAAAATT GGTTGGTTGCACATCCAGTGACAAAAATTTATGTAGAAGCTATACACNCAAAAAAAAAAA] consensusID : consensus_9960#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence [TTGGCCAGGGCTATTTGGGGTGATCAAACAAGGGAGATCACGCGCCGTGTTGTCGGAACATACGGATATATGGCGCAGGAATATGCAATGCGTGGGCACTTTTCTGTAAAGTCAGATGTCCTTAGCTTTGGCATATTGATAATAGAAATTGTGACAGGAAGGAGAAGCAGTGGTTCACTCAGCTTTGATCAATCAAACGATCTCCTAAGTCTTGTATGGGAGCACTGGACCATGGGAACAATTTTGGAGATGATGGATCCATCTTTTACAAGCCATGCTCCTCGAGACCAGATGGTGAAGTGTATTCACATTGGGGTACTGTGTGTTCAAGATAACCCAGCGGATAGACCTATGATGTCAACAGTGAATGTCATGCTTAGCAGCAGCACAGTGTCTTTTCAATTTCCATCCAAGCCATCATTTTTCATTCCCAAGAGTGACACAGACTCAAATATATACTTGGAATCACACCCCCTAACTTTCCAATTGACTGCCTCGACCGGTAGGTCGGGAGGGATGTCGGTTAATGATGTGTCAATTACAGAGCTTGAACCAAGATAAGGAAACCTATTCCTTTGAATTTAAGATAAGAAAATCAATGGCAACGGTTATCGATTTGTTACCTTTTAGAAACAAACTTCAGGGAGAAGGCCATAAACTTGTAGGAGAAGCCTTGAAAAAAAAAAAAA] [-] EMBL CA763088 [TTGGCCAGGGCTATTTGGGGTGATCAAACAAGGGAGATCACGCGCCGTGTTGTCGGAACATACGGATATATGGCGCAGGAATATGCAATGCGTGGGCACTTTTCTGTAAAGTCAGATGTCCTTAGCTTTGGCATATTGATAATAGAAATTGTGACAGGAAGGAGAAGCAGTGGTTCACTCAGCTTTGATCAATCAAACGATCTCCTAAGTCTTGTATGGGAGCACTGGACCATGGGAACAATTTTGGAGATGATGGATCCATCTTTTACAAGCCATGCTCCTCGAGACCAGATGGTGAAGTGTATTCACATTGGGGTACTGTGTGTTCAAGATAACCCAGCGGATAGACCTATGATGTCAACAGTGAATGTCATGCTTAGCAGCAGCACAGTGTCTTTTCAATTTCCATCCAAGCCATCATTTTTCATTCCCAAGAGTGACACAGACTCAAATATATACTTGGAATCACACCCCCTAACTTTCCAATTGACTGCCTCGACCGGTAGGTCGGGAGGGATGTCGGTTAATGATGTGTCAATTACAGAGCTTGAACCAAGATAAGGAAACCTATTCCTTTGAATTTAAGATAAGAAAATCAATGGCAACGGTTATCGATTTGTTACCTTTTAGAAACAAACTTCAGGGAGAAGGCCATAAACTTGTAGGAGAAGCCTTGAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9960#0 AGNACAAGGGGAAAAAGATTTAGGATAATAAACGGAATTGCTCGAGGATTACAATATCTT 60 consensus_9960#2 ------------------------------------------------------------ consensus_9960#1 ------------------------------------------------------------ consensus_9960#0 CAAGAAGATTCTCAGCTGAGAATAATTCACCGGGACCTCAAAGCAAGCAATGTTCTATTG 120 consensus_9960#2 ------------------------------------------------------------ consensus_9960#1 ------------------------------------------------------------ consensus_9960#0 GACTCCGACTATACTCCTAAGATTTCGGATTTTGGTTTGGCAAGGCTATTTGGGGGTGAT 180 consensus_9960#2 -----------------------------------TTGGCCAGGGCTATTTGGGG-TGAT 24 consensus_9960#1 ------------------------------------------------------------ consensus_9960#0 CAAACAAGGGAGATCACGCGCCGTGTTGTCGGAACATACGGATATATGGCGCCAGAATAT 240 consensus_9960#2 CAAACAAGGGAGATCACGCGCCGTGTTGTCGGAACATACGGATATATGGCGCAGGAATAT 84 consensus_9960#1 ----------AAGTCACAAGCCGTGTGGTAGGAACATATGGATATATGGCACCAGAGTAC 50 * **** ******* ** ******** *********** * ** ** consensus_9960#0 GCAATGCGTGGGCACTATTCTGTAAAGTCAGATGTCTTTAGCTTTGGCATATTGATAATA 300 consensus_9960#2 GCAATGCGTGGGCACTTTTCTGTAAAGTCAGATGTCCTTAGCTTTGGCATATTGATAATA 144 consensus_9960#1 GCGATGCGTGGCCACTATTCTGTAAAATCAGACGTCTTTAGCTTTGGCATATTGATGATA 110 ** ******** **** ********* ***** *** ******************* *** consensus_9960#0 GAAATTGTGACAGGAAGGAGAAGCAGTGGTTCACTCAGCTTTGATCAATCAAACGATCTC 360 consensus_9960#2 GAAATTGTGACAGGAAGGAGAAGCAGTGGTTCACTCAGCTTTGATCAATCAAACGATCTC 204 consensus_9960#1 GAAATTGTGACAGGAAGAAGAAGCAGTGGTTCATATAGCTTTGATCAATCATATGATCTC 170 ***************** *************** *************** * ****** consensus_9960#0 CTAAGTCTTGTATGGGAGCACTGGACCATGGGAACAATTTTGGAGATGATGGATCCATCT 420 consensus_9960#2 CTAAGTCTTGTATGGGAGCACTGGACCATGGGAACAATTTTGGAGATGATGGATCCATCT 264 consensus_9960#1 CTAAGCC--GTATGGGAGCACTGGACCATGGGAACAATTTTGGAGATGATGGATCCCTCT 228 ***** * *********************************************** *** consensus_9960#0 CTTACAAGCCATGCTCCTCGAGACCGGATGCTGAAGTGTATTCACATTGGGCTACTGTGT 480 consensus_9960#2 TTTACAAGCCATGCTCCTCGAGACCAGATGGTGAAGTGTATTCACATTGGGGTACTGTGT 324 consensus_9960#1 CTTACAAGCCATGCTCCTCGAGACCAGATGCTCAAGTGTATTCACATTGGGCTACTGTGT 288 ************************ **** * ****************** ******** consensus_9960#0 GTTCAAGATAACCCAGCGGATAGACCTATGATGTCAACAGTGAATGTCATGCTTAGCAGC 540 consensus_9960#2 GTTCAAGATAACCCAGCGGATAGACCTATGATGTCAACAGTGAATGTCATGCTTAGCAGC 384 consensus_9960#1 GTTCAAGATAACCCAGCAGATAGACCTATGATGTCAACAGTGAATGTCATGCTTAGCAGC 348 ***************** ****************************************** consensus_9960#0 AGCACAGTGTCTCTTCAATCTCCATCCAAGCCATCATTTTTCATTCCCAAGAGTGACACA 600 consensus_9960#2 AGCACAGTGTCTTTTCAATTTCCATCCAAGCCATCATTTTTCATTCCCAAGAGTGACACA 444 consensus_9960#1 AGCACAGTGTCTCTTCAATCTCCATCCAAGCCATCATTTTTCATTCCCAAAAGTGACACA 408 ************ ****** ****************************** ********* consensus_9960#0 GACTCAAATATATACTCGGAATCACACCCACTAACTTCCCAATCGACTGCCTCGACCGGT 660 consensus_9960#2 GACTCAAATATATACTTGGAATCACACCCCCTAACTTTCCAATTGACTGCCTCGACCGGT 504 consensus_9960#1 GACTCAAATATATACTCGGAATCACACCCACTAACTTCCCAATCGACTGCCTCGACCGGT 468 **************** ************ ******* ***** **************** consensus_9960#0 AGGTCGGGAGGGATGTCAGNTAATGACGTGTCAATTACAGAGCTTGNACCAAGATAAGGN 720 consensus_9960#2 AGGTCGGGAGGGATGTCGGTTAATGATGTGTCAATTACAGAGCTTGAACCAAGATAAGGA 564 consensus_9960#1 AGGTCGGGAGGGATGTCAGTTAATGATGTGTCAATTACAGAGCTTGAACCAAGATAAGGA 528 ***************** * ****** ******************* ************ consensus_9960#0 AACCAATTCCTTTGAATTTAAGATAAGAAAATCAATGNCAACGGTAATCGATTTGGTACC 780 consensus_9960#2 AACCTATTCCTTTGAATTTAAGATAAGAAAATCAATGGCAACGGTTATCGATTTGTTACC 624 consensus_9960#1 AACCAAATCCTTCGAATTTAAGATAAGAAAATCAGTGACAACGGTAATTGAATTGTTACT 588 **** * ***** ********************* ** ******* ** ** *** *** consensus_9960#0 TTTCANAA-CAAACTTCANGGAGAAGGC-ATAA-CTTGGAGGAAAAGCATTGAATTCTGA 837 consensus_9960#2 TTTTAGAAACAAACTTCAGGGAGAAGGCCATAAACTTGTAGGAGAAGCCTTGAAAAAAAA 684 consensus_9960#1 TTTAAGAAACAAACTTCAGGGAGAAGGCCATAAACTTGTAGGAGAAGCATTGAATTCTGA 648 *** * ** ********* ********* **** **** **** **** ***** * consensus_9960#0 GNGCATT-CTNCATTGGCTGAGTCANANTT--GGGTGGTTTTGTTGGTCGAC-------- 886 consensus_9960#2 AAAAA------------------------------------------------------- 689 consensus_9960#1 GTGCATTTCTCCATTGGCTGAGTCAATATTTTGGTTGGTTTTGTTTGTTCGTACAAAAAA 708 * consensus_9960#0 ------------------------------------------------------------ consensus_9960#2 ------------------------------------------------------------ consensus_9960#1 AAAAAGTTTATTTTATAGGTTTGAAAATTGGGTTGGTTGCACATCCGGTTACAAAAATTT 768 consensus_9960#0 ------------------------------ consensus_9960#2 ------------------------------ consensus_9960#1 TTGTAGAAGCTATACACNCAAAAAAAAAAA 798 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||