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Oryza sativa
cluster # 9963 cluster # 9963       Sequences # 7       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9963#0 length = 1341 sequences # 4  
consensus_9963#1 length = 1042 sequences # 1  
consensus_9963#2 length = 758 sequences # 1  
consensus_9963#3 length = 743 sequences # 1  

consensusID : consensus_9963#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1341
fasta sequence
                              [CCTCCCCCTCGCCCAGGGCCGCCGGCAACCCCAGCGGGCCGCGCTCCATCGAGGTCAACTCCGACTCCGAGGACTCCGCGCTGCCCCTGGCGTCCGACGCCTACGCCGACCAGGCCGCCGCCGCTGGCGCCGGCGCCGGCGCCGACTCCGACGACGGCAACACCTCGCCGCTCCCGCCCCCGCGCCCCTCCCGCGCCGAGGCCGCCGCCATCAAGCCCATCAGCTCCCGCCCCATGGACCCGCCGCCCCGCCGCTCCGCGGGCGGCTCCGAGCCGCGCGCCAAGCGCCCCCGCAGCGCCGCCGTGGCCTCCTCCGCGGAGCACTCGAAGCGCCCGTCGCGTGTCTGGAGCCAAGCCGACGAGCTCGTCATCCTCCGCGGCCTCATCACGTACCGCACCAAGCGTGGGGTGCTCCCTGGCTCAACGCAAGACATTGGAAAGCTCCACAGCTACATCCGTGGCCAGCTCAGTGCTAAGGTATCAACTACACAGCTCAGTGACAAGGTCCGGCGCCTCAAGCAGAAGTATCAGATGCTCGCAACACGCGCCAAGACTGGGAAGGAAGTATTCCCCACTCCGCATGACCACAATATCTACCAGCTTGCCAAGAAGGTCTGGGGGACAATGAGTACTGCTGGTGAGGGAGGAGGAAGTGGGTATGATAATGCTGATGCTGGTGAGAGCGAAGAGGAGCAATATGGCAGAGAGAGCGATGATGATATGGAGAGTGGGCGGGATAACCGTCACCGCAAGAATCAGAGATCAGTGCCAGTCACTATGGCAAATGGCAATGGGACTGGGATCGGTGCTGTGAATGCCATTGTGAGAGGGAGGAGTGAGTTTGAGAAAGGGAAGGATGTATATCCTTACCTGTGGGAAACAGTTGAGGAGCTGTCCAGCCAACATCCAACTGGAGCAGTGTTCAAGAAGGCGTTTGAGTTGCTTGAAGGATCGAAAGCACAGGTGATGGAGGAAAAGCTGCGGAAGTTCAGGCTGACTGAGATGAGACAGCAGTTGCGTCGGATGGACCTGATGAAGGACACACTGAGTATGGTGCTTGATGCCCTGGAGATGGCTGACTGAGTCCATGGGTGATATCTGGTGAGTAGTGCATTGTTAAAAGGGGGAAATTAGTGTCTTTTTCTTTTCTAGATAGAATCTCTGTGGTTAATTACTTACCTTTATGGACAAGGTTGCACATTCCTCAGTCAAAAGTTAGGGATAGAACAAGTTATGGTGTTCTCCTTGTTATTCTGAACCAATGTATTTTATGATGCTTAGGTGCTAACTTTGTGCTATATACTATAACATTTCTGTTGTTTGTTTAAATGGGCGCCAATGC]

[+] EMBL CB653051             [CCTCCCCCTCGCCCAGGGCCGCCGGCAACCCCAGCGGGCCGCGCTCCATCGAGGTCAACTCCGACTCCGAGGACTCCGCGCTGCCCCTGGCGTCCGACGCCTACGCCGACCAGGCCGCCGCCGCTGGCGCCGGCGCCGGCGCCGACTCCGACGACGGCAACACCTCGCCGCTCCCGCCCCCGCGCCCCTCCCGCGCCGAGGCCGCCGCCATCAAGCCCATCAGCTCCCGCCCCATGGACCCGCCGCCCCGCCGCTCCGCGGGCGGCTCCGAGCCGCGCGCCAAGCGCCCCCGCAGCGCCGCCGTGGCCTCCTCCGCGGAGCACTCGAAGCGCCCGTCGCGTGTCTGGAGCCAAGCCGACGAGCTCGTCATCCTCCGCGGCCTCATCACGTACCGCACCAAGCGTGGGGTGCTCCCTGGCTCAACGCAAGACATTGGAAAGCTCCACAGCTACATCCGTGGCCAGCTCAGTGCTAAGGTATCAACTACACAGCTCAGTGACAAGGTCCGGCGCCTCAAGCAGAAGTATCAGATGCTCGCAACACGCGCCAAGACTGGGAAGGAAGTATTCCCCACTCCGCATGACCACAATATCTACCAGCTTGCCAAGAAGGTCTGGGGGACAATGAGTACTGCTGGTGAGGGAGGAGGAAGTGGGTATGATAATGCTGATGCTGGTGAGAGCGAAGAGGAGCAATATGGCAGAGAGAGCGATGATGATATGGAGAGTGGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BP184900             [            acgaGGCCGCCGGCAACCCCAGCGGGCCGCGCTCCATCGAGGTCAACTCCGACTCCGAGGACTCCGCGCTGCCCCTGGCGTCCGACGCCTACGCCGACCAGGCCGCCGCCGCTGGCGCCGGCGCCGGCGCCGACTCCGACGACGGCAACACCTCGCCGCTCCCGCCCCCGCGCCCCTCCCGCGCCGAGGCCGCCGCCATCAAGCCCATCAGCTCCCGCCCCATGGACCCGCCGCCCCGCCGCTCCGCGGGCGGCTCCGAGCCGCGCGCCAAGCGCCCCCGCAGCGCCGCCGTGGCCTCCTCCGCGGAGCACTCGAAGCGCCCGTCGCGTGTCTGGAGCCAAGCCGACGAGCTCGTCATCCTCCGCGGCCTCATCACGTACCGCACCAAGCGTGGGGTGCTCCCTGGCTCAACGCAAGACATTGGAAAGCTCCACAGCTACATCCGTGGCCAGCTCAGTGCTAAGGTATCAACTACACAGCTCAGTGACAAGGTCCGGCGCCTCAAGCAGAAGTATCAGATGCTCGCAACACGCGCCAAGACTGGGAAGGAAGTATTCCCCACTCCGCATGACCACAATATCTACCAGCTTGCCAAGAAGGTCTGGGGGACAATGAGTACTGCTGGTGAGGGAGGAGGAAGTGGGTATGATAATGCTGATGCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CB625361             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TATCAGATGCTCGCAACACGCGCCAAGACTGGGAAGGAAGTATTCCCCATTCCGCATGACCACAATATCTACCAGCTTGCCAAGAAGGTCTGGGGGACAATGAGTACTGCTGGTGAGGGAGGAGGAAGTGGGTATGATAATGCTGATGCTGGTGAGAGCGAAGAGGAGCAATATGGCAGAGAGAGCGATGATGATATGGAGAGTGGGCGGGATAACCGTCACCGCAAGAATCAGAGATCAGTGCCAGTCACTATGGCAAATGGCAATGGGACTGGGATCGGTGCTGTGAATGCCATTGTGAGAGGGAGGAGTGAGTTTGAGAAAGGGAAGGATGTATATCCTTACCTGTGGGAAACAGTTGAGGAGCTGTCCAGCCAACATCCAACTGGAGCAGTGTTCAAGAAGGCGTTTGAGTTGCTTGAAGGATCGAAAGCACAGGTGATGGAGGAAAAGCTGCGGAAGTTCAGGCTGACTGAGATGAGACAGCAGTTGCGTCGGATGGACCTGATGAAGGACACACTGAGTATGGTGCTTGATGCCCTGGAGATGGCTGACTGAGTCCATGGGTGATATCTGGTGAGTAGTGCATTGTTAAAAGGGGGAAATTAGTGTCTTTTTCTTTTCTAGATAGAATCTCTGTGGTTAATTACTTACCTTTATGGACAAGGTTGCACATTCCTCAGTCAAAAGTTAGGGATAGAACAAGTTATGGTGTTCTCCTTGTTATTCTGAACCAATGTATTTTATGATGCTTAGGTGCTAACTTTGTGCTATATACTATAACATTTCTGT                         ]
[-] EMBL CB653052             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GGAAGTGGGTATGATAATGCTGATGCTGGTGAGAGCGAAGAGGAGCAATATGGCAGAGAGAGCGATGATGATATGGAGAGTGGGCGGGATAACCGTCACCGCAAGAATCAGAGATCAGTGCCAGTCACTATGGCAAATGGCAATGGGACTGGGATCGGTGCTGTGAATGCCATTGTGAGAGGGAGGAGTGAGTTTGAGAAAGGGAAGGATGTATATCCTTCCCTGTGGGAAACAGTTGAGGAGCTGTCCAGCCAACATCCAACTGGAGCAGTGTTCAAGAAGGCGTTTGAGTTGCTTGAAGGATCGAAAGCCCAGGTGATGGAGGAAAAGCTGCGGAAGTTCAGGCTGACTGAGATGAGACACCAGTTGCGTCGGATGGCCCTGATGAAGGACCCCCTGAGTATGGTGCTTGATGCCCTGGAGATGGCTGACTGAGTCCATGGGTGATATTTGGTGAGTAGTGCATTGTTAAAAGGGGGAAATTAGTGTCTTTTTCTTTTTTAGATAGAATCTCTGTGGTTAATTACTTCCCTTTATGGACAAGGTTGCACATTCCTCAGTCAAAAGTTAGGGATAGAACAAGTTATGGTGTTCTCCTTGTTATTTTGAACCAATGTATTTTATGATGCTTAGGTGCTAACTTTGTGCTATATACTATAACATTTCTGTTGTTTGTTTAAATGGGCGCCAATGC]


>consensus_9963#0 CCTCCCCCTCGCCCAGGGCCGCCGGCAACCCCAGCGGGCCGCGCTCCATCGAGGTCAACT CCGACTCCGAGGACTCCGCGCTGCCCCTGGCGTCCGACGCCTACGCCGACCAGGCCGCCG CCGCTGGCGCCGGCGCCGGCGCCGACTCCGACGACGGCAACACCTCGCCGCTCCCGCCCC CGCGCCCCTCCCGCGCCGAGGCCGCCGCCATCAAGCCCATCAGCTCCCGCCCCATGGACC CGCCGCCCCGCCGCTCCGCGGGCGGCTCCGAGCCGCGCGCCAAGCGCCCCCGCAGCGCCG CCGTGGCCTCCTCCGCGGAGCACTCGAAGCGCCCGTCGCGTGTCTGGAGCCAAGCCGACG AGCTCGTCATCCTCCGCGGCCTCATCACGTACCGCACCAAGCGTGGGGTGCTCCCTGGCT CAACGCAAGACATTGGAAAGCTCCACAGCTACATCCGTGGCCAGCTCAGTGCTAAGGTAT CAACTACACAGCTCAGTGACAAGGTCCGGCGCCTCAAGCAGAAGTATCAGATGCTCGCAA CACGCGCCAAGACTGGGAAGGAAGTATTCCCCACTCCGCATGACCACAATATCTACCAGC TTGCCAAGAAGGTCTGGGGGACAATGAGTACTGCTGGTGAGGGAGGAGGAAGTGGGTATG ATAATGCTGATGCTGGTGAGAGCGAAGAGGAGCAATATGGCAGAGAGAGCGATGATGATA TGGAGAGTGGGCGGGATAACCGTCACCGCAAGAATCAGAGATCAGTGCCAGTCACTATGG CAAATGGCAATGGGACTGGGATCGGTGCTGTGAATGCCATTGTGAGAGGGAGGAGTGAGT TTGAGAAAGGGAAGGATGTATATCCTTACCTGTGGGAAACAGTTGAGGAGCTGTCCAGCC AACATCCAACTGGAGCAGTGTTCAAGAAGGCGTTTGAGTTGCTTGAAGGATCGAAAGCAC AGGTGATGGAGGAAAAGCTGCGGAAGTTCAGGCTGACTGAGATGAGACAGCAGTTGCGTC GGATGGACCTGATGAAGGACACACTGAGTATGGTGCTTGATGCCCTGGAGATGGCTGACT GAGTCCATGGGTGATATCTGGTGAGTAGTGCATTGTTAAAAGGGGGAAATTAGTGTCTTT TTCTTTTCTAGATAGAATCTCTGTGGTTAATTACTTACCTTTATGGACAAGGTTGCACAT TCCTCAGTCAAAAGTTAGGGATAGAACAAGTTATGGTGTTCTCCTTGTTATTCTGAACCA ATGTATTTTATGATGCTTAGGTGCTAACTTTGTGCTATATACTATAACATTTCTGTTGTT TGTTTAAATGGGCGCCAATGC



consensusID : consensus_9963#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1042
fasta sequence
                              [TCCGCGCTGAACAGCACAGCGCAGCCCGCAGCGGAAGACGGAACCCGCTCTTCCCCACCCAACCCAACCAGAACCTGCTCCGCGGAGCACTCGAAGCGCCCGTCGCGTGTCTGGAGCCAAGCCGACGAGCTCGTCATCCTCCGCGGCCTCATCACGTACCGCACCAAGCGTGGGGTGCTCCCTGGCTCAACGCAAGACATTGGAAAGCTCCACAGCTACATCCGTGGCCAGCTCAGTGCTAAGGTATCAACTACACAGCTCAGTGACAAGGTCCGGCGCCTCAAGCAGAAGTATCAGATGCTCGCAACACGCGCCAAGACTGGGAAGGAAGTATTCCCCACTCCGCATGACCACAATATCTACCAGCTTGCCAAGAAGGTCTGGGGGACAATGAGTACTGCTGGTGAGGGAGGAGGAAGTGGGTATGATAATGCTGATGCTGGTGAGAGCGAAGAGGAGCAAGAATCAGAGATCAGTGCCAGTCACTATGGCAAATGGCAATGGGACTGGGATCGGTGCTGTGAATGCCATTGTGAGAGGGAGGAGTGAGTTTGAGAAAGGGAAGGATGTATATCCTTACCTGTGGGAAACAGTTGAGGAGCTGTCCAGCCAACATCCAACTGGAGCAGTGTTCAAGAAGGCGTTTGAGTTGCTTGAAGGATCGAAAGCACAGGTGATGGAGGAAAAGCTGCGGAAGTTCAGGCTGACTGAGATGAGACAGCAGTTGCGTCGGATGGACCTGATGAAGGACACACTGAGTATGGTGCTTGATGCCCTGGAGATGGCTGACTGAGTCCATGGGTGATATCTGGTGAGTAGTGCATTGTTAAAAGGGGGAAATTAGTGTCTTTTTCTTTTCTAGATAGAATCTCTGTGGTTAATTACTTACCTTTATGGACAAGGTTGCACATTCCTCAGTCAAAAGTTAGGGATAGAACAAGTTATGGTGTTCTCCTTGTTATTCTGAACAATGTATTTTATGATGCTTAGGTGCTAACTTTGTGCTATATACTATAACATTTCTGTTGTTTGTTTAAAAAAA]

[+] EMBL OSA277138            [TCCGCGCTGAACAGCACAGCGCAGCCCGCAGCGGAAGACGGAACCCGCTCTTCCCCACCCAACCCAACCAGAACCTGCTCCGCGGAGCACTCGAAGCGCCCGTCGCGTGTCTGGAGCCAAGCCGACGAGCTCGTCATCCTCCGCGGCCTCATCACGTACCGCACCAAGCGTGGGGTGCTCCCTGGCTCAACGCAAGACATTGGAAAGCTCCACAGCTACATCCGTGGCCAGCTCAGTGCTAAGGTATCAACTACACAGCTCAGTGACAAGGTCCGGCGCCTCAAGCAGAAGTATCAGATGCTCGCAACACGCGCCAAGACTGGGAAGGAAGTATTCCCCACTCCGCATGACCACAATATCTACCAGCTTGCCAAGAAGGTCTGGGGGACAATGAGTACTGCTGGTGAGGGAGGAGGAAGTGGGTATGATAATGCTGATGCTGGTGAGAGCGAAGAGGAGCAAGAATCAGAGATCAGTGCCAGTCACTATGGCAAATGGCAATGGGACTGGGATCGGTGCTGTGAATGCCATTGTGAGAGGGAGGAGTGAGTTTGAGAAAGGGAAGGATGTATATCCTTACCTGTGGGAAACAGTTGAGGAGCTGTCCAGCCAACATCCAACTGGAGCAGTGTTCAAGAAGGCGTTTGAGTTGCTTGAAGGATCGAAAGCACAGGTGATGGAGGAAAAGCTGCGGAAGTTCAGGCTGACTGAGATGAGACAGCAGTTGCGTCGGATGGACCTGATGAAGGACACACTGAGTATGGTGCTTGATGCCCTGGAGATGGCTGACTGAGTCCATGGGTGATATCTGGTGAGTAGTGCATTGTTAAAAGGGGGAAATTAGTGTCTTTTTCTTTTCTAGATAGAATCTCTGTGGTTAATTACTTACCTTTATGGACAAGGTTGCACATTCCTCAGTCAAAAGTTAGGGATAGAACAAGTTATGGTGTTCTCCTTGTTATTCTGAACAATGTATTTTATGATGCTTAGGTGCTAACTTTGTGCTATATACTATAACATTTCTGTTGTTTGTTTAAAAAAA]


>consensus_9963#1 TCCGCGCTGAACAGCACAGCGCAGCCCGCAGCGGAAGACGGAACCCGCTCTTCCCCACCC AACCCAACCAGAACCTGCTCCGCGGAGCACTCGAAGCGCCCGTCGCGTGTCTGGAGCCAA GCCGACGAGCTCGTCATCCTCCGCGGCCTCATCACGTACCGCACCAAGCGTGGGGTGCTC CCTGGCTCAACGCAAGACATTGGAAAGCTCCACAGCTACATCCGTGGCCAGCTCAGTGCT AAGGTATCAACTACACAGCTCAGTGACAAGGTCCGGCGCCTCAAGCAGAAGTATCAGATG CTCGCAACACGCGCCAAGACTGGGAAGGAAGTATTCCCCACTCCGCATGACCACAATATC TACCAGCTTGCCAAGAAGGTCTGGGGGACAATGAGTACTGCTGGTGAGGGAGGAGGAAGT GGGTATGATAATGCTGATGCTGGTGAGAGCGAAGAGGAGCAAGAATCAGAGATCAGTGCC AGTCACTATGGCAAATGGCAATGGGACTGGGATCGGTGCTGTGAATGCCATTGTGAGAGG GAGGAGTGAGTTTGAGAAAGGGAAGGATGTATATCCTTACCTGTGGGAAACAGTTGAGGA GCTGTCCAGCCAACATCCAACTGGAGCAGTGTTCAAGAAGGCGTTTGAGTTGCTTGAAGG ATCGAAAGCACAGGTGATGGAGGAAAAGCTGCGGAAGTTCAGGCTGACTGAGATGAGACA GCAGTTGCGTCGGATGGACCTGATGAAGGACACACTGAGTATGGTGCTTGATGCCCTGGA GATGGCTGACTGAGTCCATGGGTGATATCTGGTGAGTAGTGCATTGTTAAAAGGGGGAAA TTAGTGTCTTTTTCTTTTCTAGATAGAATCTCTGTGGTTAATTACTTACCTTTATGGACA AGGTTGCACATTCCTCAGTCAAAAGTTAGGGATAGAACAAGTTATGGTGTTCTCCTTGTT ATTCTGAACAATGTATTTTATGATGCTTAGGTGCTAACTTTGTGCTATATACTATAACAT TTCTGTTGTTTGTTTAAAAAAA



consensusID : consensus_9963#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 758
fasta sequence
                              [TATCAGATGCTCGCAACACGCGCCAAGACTGGGAAGGAAGTATTCCCCATTCCGCATGACCACAATATCTACCAGCTTGCCAAGAAGGTCTGGGGGACAATGAGTACTGCTGGTGAGGGAGGAGGAAGTGGGTATGATAATGCTGATGCTGGTGAGAGCGAAGAGGAGCAATATGGCAGAGAGAGCGATGATGATATGGAGAGTGGGCGGGATAACCGTCACCGCAAGAATCAGAGATCAGTGCCAGTCACTATGGCAAATGGCAATGGGACTGGGATCGGTGCTGTGAATGCCATTGTGAGAGGGAGGAGTGAGTTTGAGAAAGGGAAGGATGTATATCCTTACCTGTGGGAAACAGTTGAGGAGCTGTCCAGCCAACATCCAACTGGAGCAGTGTTCAAGAAGGCGTTTGAGTTGCTTGAAGGATCGAAAGCACAGGTGATGGAGGAAAAGCTGCGGAAGTTCAGGCTGACTGAGATGAGACAGCAGTTGCGTCGGATGGACCTGATGAAGGACACACTGAGTATGGTGCTTGATGCCCTGGAGATGGCTGACTGAGTCCATGGGTGATATCTGGTGAGTAGTGCATTGTTAAAAGGGGGAAATTAGTGTCTTTTTCTTTTCTAGATAGAATCTCTGTGGTTAATTACTTACCTTTATGGACAAGGTTGCACATTCCTCAGTCAAAACTTCGGCAGCCGCCGAGTCGGCCTCCTCGCCGGGGCGCTTCGGTGCCATGCGGAGCAGGTTCTGGTTGG]

[-] EMBL CB625360             [TATCAGATGCTCGCAACACGCGCCAAGACTGGGAAGGAAGTATTCCCCATTCCGCATGACCACAATATCTACCAGCTTGCCAAGAAGGTCTGGGGGACAATGAGTACTGCTGGTGAGGGAGGAGGAAGTGGGTATGATAATGCTGATGCTGGTGAGAGCGAAGAGGAGCAATATGGCAGAGAGAGCGATGATGATATGGAGAGTGGGCGGGATAACCGTCACCGCAAGAATCAGAGATCAGTGCCAGTCACTATGGCAAATGGCAATGGGACTGGGATCGGTGCTGTGAATGCCATTGTGAGAGGGAGGAGTGAGTTTGAGAAAGGGAAGGATGTATATCCTTACCTGTGGGAAACAGTTGAGGAGCTGTCCAGCCAACATCCAACTGGAGCAGTGTTCAAGAAGGCGTTTGAGTTGCTTGAAGGATCGAAAGCACAGGTGATGGAGGAAAAGCTGCGGAAGTTCAGGCTGACTGAGATGAGACAGCAGTTGCGTCGGATGGACCTGATGAAGGACACACTGAGTATGGTGCTTGATGCCCTGGAGATGGCTGACTGAGTCCATGGGTGATATCTGGTGAGTAGTGCATTGTTAAAAGGGGGAAATTAGTGTCTTTTTCTTTTCTAGATAGAATCTCTGTGGTTAATTACTTACCTTTATGGACAAGGTTGCACATTCCTCAGTCAAAACTTCGGCAGCCGCCGAGTCGGCCTCCTCGCCGGGGCGCTTCGGTGCCATGCGGAGCAGGTTCTGGTTGG]


>consensus_9963#2 TATCAGATGCTCGCAACACGCGCCAAGACTGGGAAGGAAGTATTCCCCATTCCGCATGAC CACAATATCTACCAGCTTGCCAAGAAGGTCTGGGGGACAATGAGTACTGCTGGTGAGGGA GGAGGAAGTGGGTATGATAATGCTGATGCTGGTGAGAGCGAAGAGGAGCAATATGGCAGA GAGAGCGATGATGATATGGAGAGTGGGCGGGATAACCGTCACCGCAAGAATCAGAGATCA GTGCCAGTCACTATGGCAAATGGCAATGGGACTGGGATCGGTGCTGTGAATGCCATTGTG AGAGGGAGGAGTGAGTTTGAGAAAGGGAAGGATGTATATCCTTACCTGTGGGAAACAGTT GAGGAGCTGTCCAGCCAACATCCAACTGGAGCAGTGTTCAAGAAGGCGTTTGAGTTGCTT GAAGGATCGAAAGCACAGGTGATGGAGGAAAAGCTGCGGAAGTTCAGGCTGACTGAGATG AGACAGCAGTTGCGTCGGATGGACCTGATGAAGGACACACTGAGTATGGTGCTTGATGCC CTGGAGATGGCTGACTGAGTCCATGGGTGATATCTGGTGAGTAGTGCATTGTTAAAAGGG GGAAATTAGTGTCTTTTTCTTTTCTAGATAGAATCTCTGTGGTTAATTACTTACCTTTAT GGACAAGGTTGCACATTCCTCAGTCAAAACTTCGGCAGCCGCCGAGTCGGCCTCCTCGCC GGGGCGCTTCGGTGCCATGCGGAGCAGGTTCTGGTTGG



consensusID : consensus_9963#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 743
fasta sequence
                              [GACAATGAGTACTCCTGGTGAGGGAGGAGGAAGTGGGTATGATAATGCTGATGCTGGTGAGAGCGAAGAGGAGCAATATGGCAGAGAGAGCGATGATGATATGGAGAGTGGGGGGGATAACCGTCCCCGCAAGAATCAGAGATCAGTGCCAGTCCCTATGGCAAATGGCAATGGGACTGGGATCGGTGCTGTGAATGCCATTGTGAGAGGGAGGAGTGAGTTTGAGAAAGGGAAGGATGTATATCCTTCCCTGTGGGAAACAGTTGAGGAGCTGTCCAGCCAACATCCAACTGGAGCAGTGTTCAAGAAGGCGTTTGAGTTGCTTGAAGGATCGAAAGCCCAGGTGATGGAGGAAAAGCTGCGGAAGTTCAGGCTGACTGAGATGAGACACCAGTTGCGTCGGATGGCCCTGATGAAGGACCCCCTGAGTATGGTGCTTGATGCCCTGGAGATGGCTGACTGAGTCCATGGGGGATATTTGGGGAGTAGTGCATTGTTAAAAGGGGGAAATTAGTGTTTTTTTTTTTTTTAGATAGAATTTCTGTGGTTAATTACTTCCCTTTATGGACAAGGTTGCCCATTCCTCAGTCAAAAGTTAGGGATAGAACAAGTTATGGGGTTTTCCTTGTTATTTTGAACCAATGTATTTTATGATGCTTAGGTGCTAACTTTGTGCTATATACTATAACATTTCTGTTGGTTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGA]

[-] EMBL CB657689             [GACAATGAGTACTCCTGGTGAGGGAGGAGGAAGTGGGTATGATAATGCTGATGCTGGTGAGAGCGAAGAGGAGCAATATGGCAGAGAGAGCGATGATGATATGGAGAGTGGGGGGGATAACCGTCCCCGCAAGAATCAGAGATCAGTGCCAGTCCCTATGGCAAATGGCAATGGGACTGGGATCGGTGCTGTGAATGCCATTGTGAGAGGGAGGAGTGAGTTTGAGAAAGGGAAGGATGTATATCCTTCCCTGTGGGAAACAGTTGAGGAGCTGTCCAGCCAACATCCAACTGGAGCAGTGTTCAAGAAGGCGTTTGAGTTGCTTGAAGGATCGAAAGCCCAGGTGATGGAGGAAAAGCTGCGGAAGTTCAGGCTGACTGAGATGAGACACCAGTTGCGTCGGATGGCCCTGATGAAGGACCCCCTGAGTATGGTGCTTGATGCCCTGGAGATGGCTGACTGAGTCCATGGGGGATATTTGGGGAGTAGTGCATTGTTAAAAGGGGGAAATTAGTGTTTTTTTTTTTTTTAGATAGAATTTCTGTGGTTAATTACTTCCCTTTATGGACAAGGTTGCCCATTCCTCAGTCAAAAGTTAGGGATAGAACAAGTTATGGGGTTTTCCTTGTTATTTTGAACCAATGTATTTTATGATGCTTAGGTGCTAACTTTGTGCTATATACTATAACATTTCTGTTGGTTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGA]


>consensus_9963#3 GACAATGAGTACTCCTGGTGAGGGAGGAGGAAGTGGGTATGATAATGCTGATGCTGGTGA GAGCGAAGAGGAGCAATATGGCAGAGAGAGCGATGATGATATGGAGAGTGGGGGGGATAA CCGTCCCCGCAAGAATCAGAGATCAGTGCCAGTCCCTATGGCAAATGGCAATGGGACTGG GATCGGTGCTGTGAATGCCATTGTGAGAGGGAGGAGTGAGTTTGAGAAAGGGAAGGATGT ATATCCTTCCCTGTGGGAAACAGTTGAGGAGCTGTCCAGCCAACATCCAACTGGAGCAGT GTTCAAGAAGGCGTTTGAGTTGCTTGAAGGATCGAAAGCCCAGGTGATGGAGGAAAAGCT GCGGAAGTTCAGGCTGACTGAGATGAGACACCAGTTGCGTCGGATGGCCCTGATGAAGGA CCCCCTGAGTATGGTGCTTGATGCCCTGGAGATGGCTGACTGAGTCCATGGGGGATATTT GGGGAGTAGTGCATTGTTAAAAGGGGGAAATTAGTGTTTTTTTTTTTTTTAGATAGAATT TCTGTGGTTAATTACTTCCCTTTATGGACAAGGTTGCCCATTCCTCAGTCAAAAGTTAGG GATAGAACAAGTTATGGGGTTTTCCTTGTTATTTTGAACCAATGTATTTTATGATGCTTA GGTGCTAACTTTGTGCTATATACTATAACATTTCTGTTGGTTGTTTAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9963#1      ------------------------------------------------------------
consensus_9963#3      ------------------------------------------------------------
consensus_9963#0      CCTCCCCCTCGCCCAGGGCCGCCGGCAACCCCAGCGGGCCGCGCTCCATCGAGGTCAACT 60
consensus_9963#2      ------------------------------------------------------------
                                                                                  

consensus_9963#1      ------------------------------------------------------------
consensus_9963#3      ------------------------------------------------------------
consensus_9963#0      CCGACTCCGAGGACTCCGCGCTGCCCCTGGCGTCCGACGCCTACGCCGACCAGGCCGCCG 120
consensus_9963#2      ------------------------------------------------------------
                                                                                  

consensus_9963#1      ------------------------------------------------------------
consensus_9963#3      ------------------------------------------------------------
consensus_9963#0      CCGCTGGCGCCGGCGCCGGCGCCGACTCCGACGACGGCAACACCTCGCCGCTCCCGCCCC 180
consensus_9963#2      ------------------------------------------------------------
                                                                                  

consensus_9963#1      ------------------------------------------------------TCCGCG 6
consensus_9963#3      ------------------------------------------------------------
consensus_9963#0      CGCGCCCCTCCCGCGCCGAGGCCGCCGCCATCAAGCCCATCAGCTCCCGCCCCATGGACC 240
consensus_9963#2      ------------------------------------------------------------
                                                                                  

consensus_9963#1      CTGAACAGCACAGCGCAGCCCGCAGCGGAAGACGGAACCCGCTCTTCCCCACCCAACCCA 66
consensus_9963#3      ------------------------------------------------------------
consensus_9963#0      CGCCGCCCCGCCGCTCCGCGGGCGGCTCCGAGCCGCGCGC-CAAGCGCCCCCGCAGCGCC 299
consensus_9963#2      ------------------------------------------------------------
                                                                                  

consensus_9963#1      ACCAGAACCTGCTCCGCGGAGCACTCGAAGCGCCCGTCGCGTGTCTGGAGCCAAGCCGAC 126
consensus_9963#3      ------------------------------------------------------------
consensus_9963#0      GCCGTGGCCTCCTCCGCGGAGCACTCGAAGCGCCCGTCGCGTGTCTGGAGCCAAGCCGAC 359
consensus_9963#2      ------------------------------------------------------------
                                                                                  

consensus_9963#1      GAGCTCGTCATCCTCCGCGGCCTCATCACGTACCGCACCAAGCGTGGGGTGCTCCCTGGC 186
consensus_9963#3      ------------------------------------------------------------
consensus_9963#0      GAGCTCGTCATCCTCCGCGGCCTCATCACGTACCGCACCAAGCGTGGGGTGCTCCCTGGC 419
consensus_9963#2      ------------------------------------------------------------
                                                                                  

consensus_9963#1      TCAACGCAAGACATTGGAAAGCTCCACAGCTACATCCGTGGCCAGCTCAGTGCTAAGGTA 246
consensus_9963#3      ------------------------------------------------------------
consensus_9963#0      TCAACGCAAGACATTGGAAAGCTCCACAGCTACATCCGTGGCCAGCTCAGTGCTAAGGTA 479
consensus_9963#2      ------------------------------------------------------------
                                                                                  

consensus_9963#1      TCAACTACACAGCTCAGTGACAAGGTCCGGCGCCTCAAGCAGAAGTATCAGATGCTCGCA 306
consensus_9963#3      ------------------------------------------------------------
consensus_9963#0      TCAACTACACAGCTCAGTGACAAGGTCCGGCGCCTCAAGCAGAAGTATCAGATGCTCGCA 539
consensus_9963#2      ---------------------------------------------TATCAGATGCTCGCA 15
                                                                                  

consensus_9963#1      ACACGCGCCAAGACTGGGAAGGAAGTATTCCCCACTCCGCATGACCACAATATCTACCAG 366
consensus_9963#3      ----------------GACAATGAGTACTCCTGGTGAGGGAGGAGGA-AGTGGGTATGAT 43
consensus_9963#0      ACACGCGCCAAGACTGGGAAGGAAGTATTCCCCACTCCGCATGACCACAATATCTACCAG 599
consensus_9963#2      ACACGCGCCAAGACTGGGAAGGAAGTATTCCCCATTCCGCATGACCACAATATCTACCAG 75
                                      *  *   **** ***       * * **  * * *   **  * 

consensus_9963#1      CTTGCCAA-GAAGGTCTGGGGGACAATGAGTACTGCTGGTGAG----------------- 408
consensus_9963#3      AATGCTGATGCTGGTGAGAGCGAAGAGGAGCAATAT------------------------ 79
consensus_9963#0      CTTGCCAA-GAAGGTCTGGGGGACAATGAGTACTGCTGGTGAGGGAGGAGGAAGTGGGTA 658
consensus_9963#2      CTTGCCAA-GAAGGTCTGGGGGACAATGAGTACTGCTGGTGAGGGAGGAGGAAGTGGGTA 134
                        ***  * *  ***  * * **  * *** * *                          

consensus_9963#1      ----------------------------------------GGAGGAGGAAGTGGGTATGA 428
consensus_9963#3      ----------------------------------------GGCAGAGAGAGCGATGATGA 99
consensus_9963#0      TGATAATGCTGATGCTGGTGAGAGCGAAGAGGAGCAATATGGCAGAGAGAGCGATGATGA 718
consensus_9963#2      TGATAATGCTGATGCTGGTGAGAGCGAAGAGGAGCAATATGGCAGAGAGAGCGATGATGA 194
                                                              **  ***  ** *   ****

consensus_9963#1      TAATGCTGATGCTGGTGAGAGCGAAGAGGAGCAAGAATCAGAGATCAGTGCCAGTCACTA 488
consensus_9963#3      TATGGAGAGTGGGGGGGATAACCGTCCCC-GCAAGAATCAGAGATCAGTGCCAGTCCCTA 158
consensus_9963#0      TATGGAGAGTGGGCGGGATAACCGTCACC-GCAAGAATCAGAGATCAGTGCCAGTCACTA 777
consensus_9963#2      TATGGAGAGTGGGCGGGATAACCGTCACC-GCAAGAATCAGAGATCAGTGCCAGTCACTA 253
                      **  *    **   * ** * *        ************************** ***

consensus_9963#1      TGGCAAATGGCAATGGGACTGGGATCGGTGCTGTGAATGCCATTGTGAGAGGGAGGAGTG 548
consensus_9963#3      TGGCAAATGGCAATGGGACTGGGATCGGTGCTGTGAATGCCATTGTGAGAGGGAGGAGTG 218
consensus_9963#0      TGGCAAATGGCAATGGGACTGGGATCGGTGCTGTGAATGCCATTGTGAGAGGGAGGAGTG 837
consensus_9963#2      TGGCAAATGGCAATGGGACTGGGATCGGTGCTGTGAATGCCATTGTGAGAGGGAGGAGTG 313
                      ************************************************************

consensus_9963#1      AGTTTGAGAAAGGGAAGGATGTATATCCTTACCTGTGGGAAACAGTTGAGGAGCTGTCCA 608
consensus_9963#3      AGTTTGAGAAAGGGAAGGATGTATATCCTTCCCTGTGGGAAACAGTTGAGGAGCTGTCCA 278
consensus_9963#0      AGTTTGAGAAAGGGAAGGATGTATATCCTTACCTGTGGGAAACAGTTGAGGAGCTGTCCA 897
consensus_9963#2      AGTTTGAGAAAGGGAAGGATGTATATCCTTACCTGTGGGAAACAGTTGAGGAGCTGTCCA 373
                      ****************************** *****************************

consensus_9963#1      GCCAACATCCAACTGGAGCAGTGTTCAAGAAGGCGTTTGAGTTGCTTGAAGGATCGAAAG 668
consensus_9963#3      GCCAACATCCAACTGGAGCAGTGTTCAAGAAGGCGTTTGAGTTGCTTGAAGGATCGAAAG 338
consensus_9963#0      GCCAACATCCAACTGGAGCAGTGTTCAAGAAGGCGTTTGAGTTGCTTGAAGGATCGAAAG 957
consensus_9963#2      GCCAACATCCAACTGGAGCAGTGTTCAAGAAGGCGTTTGAGTTGCTTGAAGGATCGAAAG 433
                      ************************************************************

consensus_9963#1      CACAGGTGATGGAGGAAAAGCTGCGGAAGTTCAGGCTGACTGAGATGAGACAGCAGTTGC 728
consensus_9963#3      CCCAGGTGATGGAGGAAAAGCTGCGGAAGTTCAGGCTGACTGAGATGAGACACCAGTTGC 398
consensus_9963#0      CACAGGTGATGGAGGAAAAGCTGCGGAAGTTCAGGCTGACTGAGATGAGACAGCAGTTGC 1017
consensus_9963#2      CACAGGTGATGGAGGAAAAGCTGCGGAAGTTCAGGCTGACTGAGATGAGACAGCAGTTGC 493
                      * ************************************************** *******

consensus_9963#1      GTCGGATGGACCTGATGAAGGACACACTGAGTATGGTGCTTGATGCCCTGGAGATGGCTG 788
consensus_9963#3      GTCGGATGGCCCTGATGAAGGACCCCCTGAGTATGGTGCTTGATGCCCTGGAGATGGCTG 458
consensus_9963#0      GTCGGATGGACCTGATGAAGGACACACTGAGTATGGTGCTTGATGCCCTGGAGATGGCTG 1077
consensus_9963#2      GTCGGATGGACCTGATGAAGGACACACTGAGTATGGTGCTTGATGCCCTGGAGATGGCTG 553
                      ********* ************* * **********************************

consensus_9963#1      ACTGAGTCCATGGGTGATATCTGGTGAGTAGTGCATTGTTAAAAGGGGGAAATTAGTGTC 848
consensus_9963#3      ACTGAGTCCATGGGGGATATTTGGGGAGTAGTGCATTGTTAAAAGGGGGAAATTAGTGTT 518
consensus_9963#0      ACTGAGTCCATGGGTGATATCTGGTGAGTAGTGCATTGTTAAAAGGGGGAAATTAGTGTC 1137
consensus_9963#2      ACTGAGTCCATGGGTGATATCTGGTGAGTAGTGCATTGTTAAAAGGGGGAAATTAGTGTC 613
                      ************** ***** *** ********************************** 

consensus_9963#1      TTTTTCTTTTCTAGATAGAATCTCTGTGGTTAATTACTTACCTTTATGGACAAGGTTGCA 908
consensus_9963#3      TTTTTTTTTTTTAGATAGAATTTCTGTGGTTAATTACTTCCCTTTATGGACAAGGTTGCC 578
consensus_9963#0      TTTTTCTTTTCTAGATAGAATCTCTGTGGTTAATTACTTACCTTTATGGACAAGGTTGCA 1197
consensus_9963#2      TTTTTCTTTTCTAGATAGAATCTCTGTGGTTAATTACTTACCTTTATGGACAAGGTTGCA 673
                      ***** **** ********** ***************** ******************* 

consensus_9963#1      CATTCCTCAGTCAAAAGTTAGGGATAGAACAAGTTATGGTGTTCTCCTTGTTATTCTGAA 968
consensus_9963#3      CATTCCTCAGTCAAAAGTTAGGGATAGAACAAGTTATGGGGTTTTCCTTGTTATTTTGAA 638
consensus_9963#0      CATTCCTCAGTCAAAAGTTAGGGATAGAACAAGTTATGGTGTTCTCCTTGTTATTCTGAA 1257
consensus_9963#2      CATTCCTCAGTCAAAACTTCGGCAGCCGCCGAGTC-----GGCCTCCTCGCCG----GGG 724
                      **************** ** ** *     * ***      *   **** *       *  

consensus_9963#1      C-AATGTATTTTATGATGCTTAGGTGCTAACTTTGTGCTATATACTATAACATTTCTGTT 1027
consensus_9963#3      CCAATGTATTTTATGATGCTTAGGTGCTAACTTTGTGCTATATACTATAACATTTCTGTT 698
consensus_9963#0      CCAATGTATTTTATGATGCTTAGGTGCTAACTTTGTGCTATATACTATAACATTTCTGTT 1317
consensus_9963#2      CGCTTCGGTGCCATGCGGAGCAGGTTCTGGTTGG-------------------------- 758
                      *   *   *   ***  *   **** **   *                            

consensus_9963#1      GTTTGTTTAAAAAAA------------------------------ 1042
consensus_9963#3      GGTTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGA 743
consensus_9963#0      GTTTGTTTAAATGGGCGCCAATGC--------------------- 1341
consensus_9963#2      ---------------------------------------------
                                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)