These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9965#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1691 fasta sequence [AATTCCCCAATCCATCGCGAATCCGATGAAGAACCCTAACCCTCCTCACCCCAAGCACTCCTCCTCCTCCGCCGCCGCCGCCGCGATGGCGCCCCGCAAGTCGCGCTGGGGCCCGCCGCCGCCCGCCGGGGAGAAGGGGGCGGGGGCGGCGTCCACCTCCGCGCGCACCCCGACCCCGACCCCGTCTACGGCCGGCGACCCCAGGCGGCATCCGCCTCCTCCTGGCCCTGGCGCGCGCAACCCCGCCGCGTCGTCGGCCGCCGCCTTCCGTCCTCCGCCGCAGCCGCAGCAGCAGCCGCGGGTGGAGACCCCTCCCCCGCCGTCGTACGGCTTCCACAACCTGGACCGCCGCACCATGCTCCTCGCCGACGGCAGCGTGCGCACCTACTTCGCCCTGCCGCCTGATTACCCCTTCGAGCTCACCCCTCTGCCCCAGCTCCCGCACCTCCCGCGCGGGGCCGGCCATGAAGTCTGGCCGCCGCATCACCCGCCGCCGCCGCCGCAGCAGCAGCAGCTGCAGCTGGCGCAGCACGACGCCAAGCGGAAGCACCTCGCCGAGCACGACGAGGGCTTCCACAGCAGGCACCCCAAGCAACCCCGGTTCGAGGCGGCACCGCCGCAGCAGCAGCAGCTGCCACCGCATGCCGCGGTGGACCGGCACGCGCTCAGGAGGGCGTTTCTCAAGTACGCCAAGATGCTCAACGAGAGCGCGGCGCAGAGGCGGAGCTACCTTGAAGGTGGACGCGTCCCCTGCCTTGCCTGCGGCAGGTCTTCTAAGGACTTTGCTGATGTGCATGGACTTGTCATGCATGCTTACAACCCACCAAATGTGGATTCATTCATTGACCATCTTGGTTTGCACAAGGCACTATGCGTCCTTATGGGATGGGATTATACAAAAGTCCCTGAAAATTCTAAGGCATACCAGTCATTGCTCCCTGACCTTGTTCAAGCAAGTAGGGAGGACCTTATCATATGGCCACCAACTGTTATCATTCACAACACTGCTACAGGGAGGAAGAAAGATGGCCGCGCTGAGGGTTTGGGGAAT-AAAGAAATGGATAAGAAAATTTCAGAA-CTAGGTTTTGCTGGTGGCAAGTCGAAGTCCTTGTATGGAAAGGAAGGGCACTTGGGTTTGACACTTATCAAGTTTGCAAACAGCCCAGCTGGCTTGAAGGAGGCTGAGCGCCTTGCTGATTTCCTTGAGAGGC-AAGATCATGGACGTATTGGTTGGTTGCATGCACGAGCCAACCAGTCTGTAGGTTCTGATAATAGCCCTTTACTGGTTGAAACAGATAACAGGACAGGCGAGAAAAGGAGGATACTTTATGGGTACCTAGCAATTTCATCTGATATGGATGAATTAGACTCTGATTCAAGGAAAAGGGCTTCCCTCAAGAGCAAGAGAGAATTTGACCCATCTGATTAGCCTCTTCTCACAAAAGCACATCTCCTTGTCAGTTTATTTAATTCAAGCGACGCTTCTGTACCTTCTCTTAAATGCTGGTTTACAAAATATGCTGCTGTGCACTAGAAATATTACCTTTGAAAATAGTACCTGCACTTAGGATGATTGTCATCGTTATTGCTCGAAGCTACATATCTCAGCAAGTGTTTTCAAAAAAAAAACATTGCTTACTGATTGAATGGTTGTCCTGGAGAGTATTTATTCTTCCAATTTTATGATTACT] [+] EMBL AK060572 [AATTCCCCAATCCATCGCGAATCCGATGAAGAACCCTAACCCTCCTCACCCCAAGCACTCCTCCTCCTCCGCCGCCGCCGCCGCGATGGCGCCCCGCAAGTCGCGCTGGGGCCCGCCGCCGCCCGCCGGGGAGAAGGGGGCGGGGGCGGCGTCCACCTCCGCGCGCACCCCGACCCCGACCCCGTCTACGGCCGGCGACCCCAGGCGGCATCCGCCTCCTCCTGGCCCTGGCGCGCGCAACCCCGCCGCGTCGTCGGCCGCCGCCTTCCGTCCTCCGCCGCAGCCGCAGCAGCAGCCGCGGGTGGAGACCCCTCCCCCGCCGTCGTACGGCTTCCACAACCTGGACCGCCGCACCATGCTCCTCGCCGACGGCAGCGTGCGCACCTACTTCGCCCTGCCGCCTGATTACCCCTTCGAGCTCACCCCTCTGCCCCAGCTCCCGCACCTCCCGCGCGGGGCCGGCCATGAAGTCTGGCCGCCGCATCACCCGCCGCCGCCGCCGCAGCAGCAGCAGCTGCAGCTGGCGCAGCACGACGCCAAGCGGAAGCACCTCGCCGAGCACGACGAGGGCTTCCACAGCAGGCACCCCAAGCAACCCCGGTTCGAGGCGGCACCGCCGCAGCAGCAGCAGCTGCCACCGCATGCCGCGGTGGACCGGCACGCGCTCAGGAGGGCGTTTCTCAAGTACGCCAAGATGCTCAACGAGAGCGCGGCGCAGAGGCGGAGCTACCTTGAAGGTGGACGCGTCCCCTGCCTTGCCTGCGGCAGGTCTTCTAAGGACTTTGCTGATGTGCATGGACTTGTCATGCATGCTTACAACCCACCAAATGTGGATTCATTCATTGACCATCTTGGTTTGCACAAGGCACTATGCGTCCTTATGGGATGGGATTATACAAAAGTCCCTGAAAATTCTAAGGCATACCAGTCATTGCTCCCTGACCTTGTTCAAGCAAGTAGGGAGGACCTTATCATATGGCCACCAACTGTTATCATTCACAACACTGCTACAGGGAGGAAGAAAGATGGCCGCGCTGAGGGTTTGGGGAAT AAAGAAATGGATAAGAAAATTTCAGAA CTAGGTTTTGCTGGTGGCAAGTCGAAGTCCTTGTATGGAAAGGAAGGGCACTTGGGTTTGACACTTATCAAGTTTGCAAACAGCCCAGCTGGCTTGAAGGAGGCTGAGCGCCTTGCTGATTTCCTTGAGAGGC AAGATCATGGACGTATTGGTTGGTTGCATGCACGAGCCAACCAGTCTGTAGGTTCTGATAATAGCCCTTTACTGGTTGAAACAGATAACAGGACAGGCGAGAAAAGGAGGATACTTTATGGGTACCTAGCAATTTCATCTGATATGGATGAATTAGACTCTGATTCAAGGAAAAGGGCTTCCCTCAAGAGCAAGAGAGAATTTGACCCATCTGATTAGCCTCTTCTCACAAAAGCACATCTCCTTGTCAGTTTATTTAATTCAAGCGACGCTTCTGTACCTTCTCTTAAATGCTGGTTTACAAAATATGCTGCTGTGCACTAGAAATATTACCTTTGAAAA ] [-] EMBL CB627147 [ AAAATTTTAAGGCATACCAGTCATTGCTCCATGACCTTGTTCAAGCAAGTAGGGAGGACCTTATCATATGGCCACCAACTGTTATCATTCACAACACTGCTACAGGGAGGAAGAAAGATGGCCGCGCTGAGGGTTTGGGGAAT AAAGAAATGGATAAGAAAATTTCAGAA CTAGGTTTTGCTGGTGGCAAGTCGAAGTCCTTGTATGGAAAGGAAGGGCACTTGGGTTTGACACTTATCAAGTTTGCAAACAGCCCAGCTGGCTTGAAGGAGGATGAGCGCCTTGCTGATTTCCTTGAGAGGC AAGATCATGGACGTATTGGTTGGTTGCATGCACGAGCCAACCAGTCTGTAGGTTTTGATAATAACCCTTTACTGGTTGAAACAGATAACAGGACAGGCGAGAAAAGGAGGATACTTTATGGGTACCTAGCAATTTCATCTGATATGGATGAAATAGACTTTGATTCAAGGAAAAGGGCTTCCCTCAAGAACAAGANAAAA ] [-] EMBL CB627148 [ AGTAGGGAGGACCTTATCATATGGCCACCAACTGTTATCATTCACAACACTGCTACAGGGAGGAAGAAAGATGGCCGCGCTGAGGGTTTGGGGAAT AAAGAAATGGATAAGAAAATTTCAGAA CTAGGTTTTGCTGGTGGCAAGTCGAAGTCCTTGTATGGAAAGGAAGGGCACTTGGGTTTGACACTTATCAAGTTTGCAAACAGCCCAGCTGGCTTGAAGGAGGCTGAGCGCCTTGCTGATTTCCTTGAGAGGC AAGATCATGGACGTATTGGTTGGTTGCATGCACGAGCCAACCAGTCTGTAGGTTCTGATAATAGCCCTTTACTGGTTGAAACAGATAACAGGACAGGCGAGAAAAGGAGGATACTTTATGGGTACCTAGCAATTTCATCTGATATGGATGAATTAGACTCTGATTCAAGGAAAAGGGCTTCCCTCAAGAGCAAGAGAGAATTTGACCCATCTGATTAGCCTCTTCTCACAAAAGCAC CTCCTTGTCAGTTTATTTAATTCAAGCGACGCTTCTGTACCTTCTCTTAAATGCTGGTTTACAAAATATGCTGCTGTGCACTAGAAATATTACCTTTGAAAATAGTACCTGCACTTAGGATGATTGTCATCGTTATTGCTCGAAGCTACATATCTCAGCAAGTGTTTTCTGAAAGCGTCCATTGCTTACTGATTGAATGGTTGTCCTGGAGAGTATTTATTCTTCCAATTTTATGATTACT] [+] EMBL BM420129 [ AAGAAAGAT GCCGCGCTGA GGTTTGGGGAATAAAAGAAATGGATAAGAAAATTTCAGAACCTAGGTTTTGCTGGTGGCAAGTCGAAGTCCTTGTATGGAAAGGAAGGGCACTTGGGTTTGACACTTATCAAGTTTGCAAACAGCCCAGCTGGCTTGAAGGAGGCTGAGCGCCTTGCTGATTTCCTTGAGAGGC AAGATCATGGACGTATTGGTTGGTTGCATGCACGAGCCAACCAGTCTGTAGGTTCTGATAATAGCCCTTTACTGGTTGAAACAGATAACAGGACAGGCGAGAAAAGGAGGATACTTTATGGGTACCTAGCAATTTCATCTGATATGGATGAATTAGACTCTGATTCAAGGAAAAGGGCTTCCCTCAAGAGCAAGAGAGAATTTGACCCATCTGATTAGCCTCTTCTCACAAAAGCAC CTCCTTGTCAGTTTATTTAATTCAAGCGACGCTTCTGTACCTTCTCTTAAATGCTGGTTTACAAAATATGCTGCTGTGCACTAGAAATATTACCTTTGAAAATAGTACCTGCACTTAGGATGATTGTCATCGTTATTGCTCGAAaaaaaaaa ] [+] EMBL AA753655 [ gAAGGGA GGCA TTGG TTNANA TTATCAAG TTGC AACANCCCAG TGG TGGAGGGGGNTGAGC CCTTG TGATTTCCTTGAGA GC AAGATCATGGANGTA TGGTTGGTTGCATGCACGANCCAACCAGTCTGTAGGTTCTGATAATAGCCCTTTACTGGTTGAAACAGATAACAGGACAGGCGAGAAAAGGAGGATACTTTATGGGTACCTAGCAATTTCATCTGATATGGATGAATTAGACTCTGATTCAAGGAAAAGGGCTTCCCTCAAGAGCAAGAGAGAATTTGACCCATCTGATTAGCCTCTTCTCACAAAAGCACATCTCCTTGTCAGTTTATTTAATTCAAGCGACGCTTCTGTACCTTCTCTTAAATGCTGGTTTACAAAATATGCTGCTGTGCACTAGAAATATTACCTTTGAAAATAGTACCTGCACTTAGGATGATTGTCATCGTTATTGCTCGAAGCTACATATCTCAGCAAGTGTTTTCAAAAAAAAAA ] [+] EMBL AA753395 [ AAGGA GGCA TTGG TTGANA TATCAAG TTGCAAACA CCCA CTGGCTTGAAGGAGG TG GC CCTTNCTGATTTCCTTGGGGGGCAAAGATCATGGA GTATTGGTTGG TGCATGCACGA CCAACCAGTCTGTAGG TNTGATAATAGCCCTTTACTGG TGAAACAGATAACAGGACAGGCGAGAAAAGGAGGATACTTTATGGGTACCTAGCAATTTCATCTGATATGGATGAATTAGACTCTGATTCAAGGAAAAGGGCTTCCCTCAAGAGCAAGAGAGAATTTGACCCATCTGATTAGCCTCTTCTCACAAAAGCACATCTCCTTGTCAGTTTATTTAATTCAAGCGACGCTTCTGTACCTTCTCTTAAATGCTGGTTTACAAAATATGCTGCTGTGCACTAGAAATATTACCTTTGAAAATAGTACCTGCACTTAGGATGATTGTCATCGTTATTGCTCGAAGCTACATATCTCAGCAAGTGTTTTCAAAAAAAAAA ] consensusID : consensus_9965#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 546 fasta sequence [TCCCGCGCGGGGCCGGCCATGAAGTCTGGCCGCCGCATCACCCGCCGCCGCCGCCGCAGCAGCAGCAGCTGCAGCTGGCGCAGCACGACGCCAAGCGGAAGCACCTCGCCGAGCACGACGAGGGCTTCCACAGCAGGCACCCCAAGCAACCCCGGTTCGAGGCGGCCCCGCCGCAGCAGCAGCAGCTGCCACCGCATGCCGCGGTGGACCGGCACGCGCTCAGGAGGGCGTTTCTCAAGTACGCCAAGATGCTCAACGAGAGCGCGGCGCAGAGGCGGAGCTACCTTGAAGGTGGACGCGTCCCCTGCCTTGCCTGCGGCAGAACTAGGTTTTGCTGGTGGCAAGTCGAAGTCCTTGTATGGAAAGGAAGGGCACTTGGGTTTGACACTTATCAAGTTTGCAAACAGCCCAGCTGGCTTGAAGGAGGCTGAGCGCCTTGCTGATTTCCTTGAGAGATAACAGGACAGGCGAGAAAAGGAGGATACTTTATGGGTACCTAGCAATTTCATCTGATATGGATGAATTAGACTCTGATTCAAGGAAAAG] [+] EMBL CA753204 [TCCCGCGCGGGGCCGGCCATGAAGTCTGGCCGCCGCATCACCCGCCGCCGCCGCCGCAGCAGCAGCAGCTGCAGCTGGCGCAGCACGACGCCAAGCGGAAGCACCTCGCCGAGCACGACGAGGGCTTCCACAGCAGGCACCCCAAGCAACCCCGGTTCGAGGCGGCCCCGCCGCAGCAGCAGCAGCTGCCACCGCATGCCGCGGTGGACCGGCACGCGCTCAGGAGGGCGTTTCTCAAGTACGCCAAGATGCTCAACGAGAGCGCGGCGCAGAGGCGGAGCTACCTTGAAGGTGGACGCGTCCCCTGCCTTGCCTGCGGCAGAACTAGGTTTTGCTGGTGGCAAGTCGAAGTCCTTGTATGGAAAGGAAGGGCACTTGGGTTTGACACTTATCAAGTTTGCAAACAGCCCAGCTGGCTTGAAGGAGGCTGAGCGCCTTGCTGATTTCCTTGAGAGATAACAGGACAGGCGAGAAAAGGAGGATACTTTATGGGTACCTAGCAATTTCATCTGATATGGATGAATTAGACTCTGATTCAAGGAAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9965#0 AATTCCCCAATCCATCGCGAATCCGATGAAGAACCCTAACCCTCCTCACCCCAAGCACTC 60 consensus_9965#1 ------------------------------------------------------------ consensus_9965#0 CTCCTCCTCCGCCGCCGCCGCCGCGATGGCGCCCCGCAAGTCGCGCTGGGGCCCGCCGCC 120 consensus_9965#1 ------------------------------------------------------------ consensus_9965#0 GCCCGCCGGGGAGAAGGGGGCGGGGGCGGCGTCCACCTCCGCGCGCACCCCGACCCCGAC 180 consensus_9965#1 ------------------------------------------------------------ consensus_9965#0 CCCGTCTACGGCCGGCGACCCCAGGCGGCATCCGCCTCCTCCTGGCCCTGGCGCGCGCAA 240 consensus_9965#1 ------------------------------------------------------------ consensus_9965#0 CCCCGCCGCGTCGTCGGCCGCCGCCTTCCGTCCTCCGCCGCAGCCGCAGCAGCAGCCGCG 300 consensus_9965#1 ------------------------------------------------------------ consensus_9965#0 GGTGGAGACCCCTCCCCCGCCGTCGTACGGCTTCCACAACCTGGACCGCCGCACCATGCT 360 consensus_9965#1 ------------------------------------------------------------ consensus_9965#0 CCTCGCCGACGGCAGCGTGCGCACCTACTTCGCCCTGCCGCCTGATTACCCCTTCGAGCT 420 consensus_9965#1 ------------------------------------------------------------ consensus_9965#0 CACCCCTCTGCCCCAGCTCCCGCACCTCCCGCGCGGGGCCGGCCATGAAGTCTGGCCGCC 480 consensus_9965#1 --------------------------TCCCGCGCGGGGCCGGCCATGAAGTCTGGCCGCC 34 ********************************** consensus_9965#0 GCATCACCCGCCGCCGCCGCCGCAGCAGCAGCAGCTGCAGCTGGCGCAGCACGACGCCAA 540 consensus_9965#1 GCATCACCCGCCGCCGCCGCCGCAGCAGCAGCAGCTGCAGCTGGCGCAGCACGACGCCAA 94 ************************************************************ consensus_9965#0 GCGGAAGCACCTCGCCGAGCACGACGAGGGCTTCCACAGCAGGCACCCCAAGCAACCCCG 600 consensus_9965#1 GCGGAAGCACCTCGCCGAGCACGACGAGGGCTTCCACAGCAGGCACCCCAAGCAACCCCG 154 ************************************************************ consensus_9965#0 GTTCGAGGCGGCACCGCCGCAGCAGCAGCAGCTGCCACCGCATGCCGCGGTGGACCGGCA 660 consensus_9965#1 GTTCGAGGCGGCCCCGCCGCAGCAGCAGCAGCTGCCACCGCATGCCGCGGTGGACCGGCA 214 ************ *********************************************** consensus_9965#0 CGCGCTCAGGAGGGCGTTTCTCAAGTACGCCAAGATGCTCAACGAGAGCGCGGCGCAGAG 720 consensus_9965#1 CGCGCTCAGGAGGGCGTTTCTCAAGTACGCCAAGATGCTCAACGAGAGCGCGGCGCAGAG 274 ************************************************************ consensus_9965#0 GCGGAGCTACCTTGAAGGTGGACGCGTCCCCTGCCTTGCCTGCGGCAGGTCTTCTAAGGA 780 consensus_9965#1 GCGGAGCTACCTTGAAGGTGGACGCGTCCCCTGCCTTGCCTGCGGCAGAACT-----AGG 329 ************************************************ ** * consensus_9965#0 CTTTGCTGATGTGCATGGACTTGTCATGCATGCTTACAACCCACCAAATGTGGATTCATT 840 consensus_9965#1 TTTTGCTGGTG-GCA---AGTCGAAGTCCTTGTATGGAA---AGGAAGGGCACTTGGGTT 382 ******* ** *** * * * * * ** * ** * ** * * ** consensus_9965#0 CATTGACCATCTTGGTTTGCACAAGGCACTATGCGTCCTTATGGGATGGGAT--TATACA 898 consensus_9965#1 TGACACTTATCA-AGTTTGCAAACAGCCCAGCTGGCTTGAAGGAGGCTGAGCGCCTTGCT 441 *** ******* * ** * * * * * * * * consensus_9965#0 AAAGTCCCTGAAA-ATTCTAAGGCATACCAGTCATTGCTCCCTGACCTTGTTCAAGCAAG 957 consensus_9965#1 GATTTCCTTGAGAGATAACAGGACAGGCGAGAAAAGGAG----GATACTTTATGGGTACC 497 * *** *** * ** * * ** * ** * * ** * * * * consensus_9965#0 TAGGGAGGACCTTATCATATGGCCACCAACTGTTATCATTCACAACACTGCTACAGGGAG 1017 consensus_9965#1 TAGCAA---TTTCATCTGATATGGATGAATTA-----------GACTCTGATTCAAGGAA 543 *** * * *** ** * ** * ** *** * ** *** consensus_9965#0 GAAGAAAGATGGCCGCGCTGAGGGTTTGGGGAATAAAGAAATGGATAAGAAAATTTCAGA 1077 consensus_9965#1 AAG--------------------------------------------------------- 546 * consensus_9965#0 ACTAGGTTTTGCTGGTGGCAAGTCGAAGTCCTTGTATGGAAAGGAAGGGCACTTGGGTTT 1137 consensus_9965#1 ------------------------------------------------------------ consensus_9965#0 GACACTTATCAAGTTTGCAAACAGCCCAGCTGGCTTGAAGGAGGCTGAGCGCCTTGCTGA 1197 consensus_9965#1 ------------------------------------------------------------ consensus_9965#0 TTTCCTTGAGAGGCAAGATCATGGACGTATTGGTTGGTTGCATGCACGAGCCAACCAGTC 1257 consensus_9965#1 ------------------------------------------------------------ consensus_9965#0 TGTAGGTTCTGATAATAGCCCTTTACTGGTTGAAACAGATAACAGGACAGGCGAGAAAAG 1317 consensus_9965#1 ------------------------------------------------------------ consensus_9965#0 GAGGATACTTTATGGGTACCTAGCAATTTCATCTGATATGGATGAATTAGACTCTGATTC 1377 consensus_9965#1 ------------------------------------------------------------ consensus_9965#0 AAGGAAAAGGGCTTCCCTCAAGAGCAAGAGAGAATTTGACCCATCTGATTAGCCTCTTCT 1437 consensus_9965#1 ------------------------------------------------------------ consensus_9965#0 CACAAAAGCACATCTCCTTGTCAGTTTATTTAATTCAAGCGACGCTTCTGTACCTTCTCT 1497 consensus_9965#1 ------------------------------------------------------------ consensus_9965#0 TAAATGCTGGTTTACAAAATATGCTGCTGTGCACTAGAAATATTACCTTTGAAAATAGTA 1557 consensus_9965#1 ------------------------------------------------------------ consensus_9965#0 CCTGCACTTAGGATGATTGTCATCGTTATTGCTCGAAGCTACATATCTCAGCAAGTGTTT 1617 consensus_9965#1 ------------------------------------------------------------ consensus_9965#0 TCAAAAAAAAAACATTGCTTACTGATTGAATGGTTGTCCTGGAGAGTATTTATTCTTCCA 1677 consensus_9965#1 ------------------------------------------------------------ consensus_9965#0 ATTTTATGATTACT 1691 consensus_9965#1 -------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||