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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9965#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1691 fasta sequence
[AATTCCCCAATCCATCGCGAATCCGATGAAGAACCCTAACCCTCCTCACCCCAAGCACTCCTCCTCCTCCGCCGCCGCCGCCGCGATGGCGCCCCGCAAGTCGCGCTGGGGCCCGCCGCCGCCCGCCGGGGAGAAGGGGGCGGGGGCGGCGTCCACCTCCGCGCGCACCCCGACCCCGACCCCGTCTACGGCCGGCGACCCCAGGCGGCATCCGCCTCCTCCTGGCCCTGGCGCGCGCAACCCCGCCGCGTCGTCGGCCGCCGCCTTCCGTCCTCCGCCGCAGCCGCAGCAGCAGCCGCGGGTGGAGACCCCTCCCCCGCCGTCGTACGGCTTCCACAACCTGGACCGCCGCACCATGCTCCTCGCCGACGGCAGCGTGCGCACCTACTTCGCCCTGCCGCCTGATTACCCCTTCGAGCTCACCCCTCTGCCCCAGCTCCCGCACCTCCCGCGCGGGGCCGGCCATGAAGTCTGGCCGCCGCATCACCCGCCGCCGCCGCCGCAGCAGCAGCAGCTGCAGCTGGCGCAGCACGACGCCAAGCGGAAGCACCTCGCCGAGCACGACGAGGGCTTCCACAGCAGGCACCCCAAGCAACCCCGGTTCGAGGCGGCACCGCCGCAGCAGCAGCAGCTGCCACCGCATGCCGCGGTGGACCGGCACGCGCTCAGGAGGGCGTTTCTCAAGTACGCCAAGATGCTCAACGAGAGCGCGGCGCAGAGGCGGAGCTACCTTGAAGGTGGACGCGTCCCCTGCCTTGCCTGCGGCAGGTCTTCTAAGGACTTTGCTGATGTGCATGGACTTGTCATGCATGCTTACAACCCACCAAATGTGGATTCATTCATTGACCATCTTGGTTTGCACAAGGCACTATGCGTCCTTATGGGATGGGATTATACAAAAGTCCCTGAAAATTCTAAGGCATACCAGTCATTGCTCCCTGACCTTGTTCAAGCAAGTAGGGAGGACCTTATCATATGGCCACCAACTGTTATCATTCACAACACTGCTACAGGGAGGAAGAAAGATGGCCGCGCTGAGGGTTTGGGGAAT-AAAGAAATGGATAAGAAAATTTCAGAA-CTAGGTTTTGCTGGTGGCAAGTCGAAGTCCTTGTATGGAAAGGAAGGGCACTTGGGTTTGACACTTATCAAGTTTGCAAACAGCCCAGCTGGCTTGAAGGAGGCTGAGCGCCTTGCTGATTTCCTTGAGAGGC-AAGATCATGGACGTATTGGTTGGTTGCATGCACGAGCCAACCAGTCTGTAGGTTCTGATAATAGCCCTTTACTGGTTGAAACAGATAACAGGACAGGCGAGAAAAGGAGGATACTTTATGGGTACCTAGCAATTTCATCTGATATGGATGAATTAGACTCTGATTCAAGGAAAAGGGCTTCCCTCAAGAGCAAGAGAGAATTTGACCCATCTGATTAGCCTCTTCTCACAAAAGCACATCTCCTTGTCAGTTTATTTAATTCAAGCGACGCTTCTGTACCTTCTCTTAAATGCTGGTTTACAAAATATGCTGCTGTGCACTAGAAATATTACCTTTGAAAATAGTACCTGCACTTAGGATGATTGTCATCGTTATTGCTCGAAGCTACATATCTCAGCAAGTGTTTTCAAAAAAAAAACATTGCTTACTGATTGAATGGTTGTCCTGGAGAGTATTTATTCTTCCAATTTTATGATTACT]
[+] EMBL AK060572 [AATTCCCCAATCCATCGCGAATCCGATGAAGAACCCTAACCCTCCTCACCCCAAGCACTCCTCCTCCTCCGCCGCCGCCGCCGCGATGGCGCCCCGCAAGTCGCGCTGGGGCCCGCCGCCGCCCGCCGGGGAGAAGGGGGCGGGGGCGGCGTCCACCTCCGCGCGCACCCCGACCCCGACCCCGTCTACGGCCGGCGACCCCAGGCGGCATCCGCCTCCTCCTGGCCCTGGCGCGCGCAACCCCGCCGCGTCGTCGGCCGCCGCCTTCCGTCCTCCGCCGCAGCCGCAGCAGCAGCCGCGGGTGGAGACCCCTCCCCCGCCGTCGTACGGCTTCCACAACCTGGACCGCCGCACCATGCTCCTCGCCGACGGCAGCGTGCGCACCTACTTCGCCCTGCCGCCTGATTACCCCTTCGAGCTCACCCCTCTGCCCCAGCTCCCGCACCTCCCGCGCGGGGCCGGCCATGAAGTCTGGCCGCCGCATCACCCGCCGCCGCCGCCGCAGCAGCAGCAGCTGCAGCTGGCGCAGCACGACGCCAAGCGGAAGCACCTCGCCGAGCACGACGAGGGCTTCCACAGCAGGCACCCCAAGCAACCCCGGTTCGAGGCGGCACCGCCGCAGCAGCAGCAGCTGCCACCGCATGCCGCGGTGGACCGGCACGCGCTCAGGAGGGCGTTTCTCAAGTACGCCAAGATGCTCAACGAGAGCGCGGCGCAGAGGCGGAGCTACCTTGAAGGTGGACGCGTCCCCTGCCTTGCCTGCGGCAGGTCTTCTAAGGACTTTGCTGATGTGCATGGACTTGTCATGCATGCTTACAACCCACCAAATGTGGATTCATTCATTGACCATCTTGGTTTGCACAAGGCACTATGCGTCCTTATGGGATGGGATTATACAAAAGTCCCTGAAAATTCTAAGGCATACCAGTCATTGCTCCCTGACCTTGTTCAAGCAAGTAGGGAGGACCTTATCATATGGCCACCAACTGTTATCATTCACAACACTGCTACAGGGAGGAAGAAAGATGGCCGCGCTGAGGGTTTGGGGAAT AAAGAAATGGATAAGAAAATTTCAGAA CTAGGTTTTGCTGGTGGCAAGTCGAAGTCCTTGTATGGAAAGGAAGGGCACTTGGGTTTGACACTTATCAAGTTTGCAAACAGCCCAGCTGGCTTGAAGGAGGCTGAGCGCCTTGCTGATTTCCTTGAGAGGC AAGATCATGGACGTATTGGTTGGTTGCATGCACGAGCCAACCAGTCTGTAGGTTCTGATAATAGCCCTTTACTGGTTGAAACAGATAACAGGACAGGCGAGAAAAGGAGGATACTTTATGGGTACCTAGCAATTTCATCTGATATGGATGAATTAGACTCTGATTCAAGGAAAAGGGCTTCCCTCAAGAGCAAGAGAGAATTTGACCCATCTGATTAGCCTCTTCTCACAAAAGCACATCTCCTTGTCAGTTTATTTAATTCAAGCGACGCTTCTGTACCTTCTCTTAAATGCTGGTTTACAAAATATGCTGCTGTGCACTAGAAATATTACCTTTGAAAA ]
[-] EMBL CB627147 [ AAAATTTTAAGGCATACCAGTCATTGCTCCATGACCTTGTTCAAGCAAGTAGGGAGGACCTTATCATATGGCCACCAACTGTTATCATTCACAACACTGCTACAGGGAGGAAGAAAGATGGCCGCGCTGAGGGTTTGGGGAAT AAAGAAATGGATAAGAAAATTTCAGAA CTAGGTTTTGCTGGTGGCAAGTCGAAGTCCTTGTATGGAAAGGAAGGGCACTTGGGTTTGACACTTATCAAGTTTGCAAACAGCCCAGCTGGCTTGAAGGAGGATGAGCGCCTTGCTGATTTCCTTGAGAGGC AAGATCATGGACGTATTGGTTGGTTGCATGCACGAGCCAACCAGTCTGTAGGTTTTGATAATAACCCTTTACTGGTTGAAACAGATAACAGGACAGGCGAGAAAAGGAGGATACTTTATGGGTACCTAGCAATTTCATCTGATATGGATGAAATAGACTTTGATTCAAGGAAAAGGGCTTCCCTCAAGAACAAGANAAAA ]
[-] EMBL CB627148 [ AGTAGGGAGGACCTTATCATATGGCCACCAACTGTTATCATTCACAACACTGCTACAGGGAGGAAGAAAGATGGCCGCGCTGAGGGTTTGGGGAAT AAAGAAATGGATAAGAAAATTTCAGAA CTAGGTTTTGCTGGTGGCAAGTCGAAGTCCTTGTATGGAAAGGAAGGGCACTTGGGTTTGACACTTATCAAGTTTGCAAACAGCCCAGCTGGCTTGAAGGAGGCTGAGCGCCTTGCTGATTTCCTTGAGAGGC AAGATCATGGACGTATTGGTTGGTTGCATGCACGAGCCAACCAGTCTGTAGGTTCTGATAATAGCCCTTTACTGGTTGAAACAGATAACAGGACAGGCGAGAAAAGGAGGATACTTTATGGGTACCTAGCAATTTCATCTGATATGGATGAATTAGACTCTGATTCAAGGAAAAGGGCTTCCCTCAAGAGCAAGAGAGAATTTGACCCATCTGATTAGCCTCTTCTCACAAAAGCAC CTCCTTGTCAGTTTATTTAATTCAAGCGACGCTTCTGTACCTTCTCTTAAATGCTGGTTTACAAAATATGCTGCTGTGCACTAGAAATATTACCTTTGAAAATAGTACCTGCACTTAGGATGATTGTCATCGTTATTGCTCGAAGCTACATATCTCAGCAAGTGTTTTCTGAAAGCGTCCATTGCTTACTGATTGAATGGTTGTCCTGGAGAGTATTTATTCTTCCAATTTTATGATTACT]
[+] EMBL BM420129 [ AAGAAAGAT GCCGCGCTGA GGTTTGGGGAATAAAAGAAATGGATAAGAAAATTTCAGAACCTAGGTTTTGCTGGTGGCAAGTCGAAGTCCTTGTATGGAAAGGAAGGGCACTTGGGTTTGACACTTATCAAGTTTGCAAACAGCCCAGCTGGCTTGAAGGAGGCTGAGCGCCTTGCTGATTTCCTTGAGAGGC AAGATCATGGACGTATTGGTTGGTTGCATGCACGAGCCAACCAGTCTGTAGGTTCTGATAATAGCCCTTTACTGGTTGAAACAGATAACAGGACAGGCGAGAAAAGGAGGATACTTTATGGGTACCTAGCAATTTCATCTGATATGGATGAATTAGACTCTGATTCAAGGAAAAGGGCTTCCCTCAAGAGCAAGAGAGAATTTGACCCATCTGATTAGCCTCTTCTCACAAAAGCAC CTCCTTGTCAGTTTATTTAATTCAAGCGACGCTTCTGTACCTTCTCTTAAATGCTGGTTTACAAAATATGCTGCTGTGCACTAGAAATATTACCTTTGAAAATAGTACCTGCACTTAGGATGATTGTCATCGTTATTGCTCGAAaaaaaaaa ]
[+] EMBL AA753655 [ gAAGGGA GGCA TTGG TTNANA TTATCAAG TTGC AACANCCCAG TGG TGGAGGGGGNTGAGC CCTTG TGATTTCCTTGAGA GC AAGATCATGGANGTA TGGTTGGTTGCATGCACGANCCAACCAGTCTGTAGGTTCTGATAATAGCCCTTTACTGGTTGAAACAGATAACAGGACAGGCGAGAAAAGGAGGATACTTTATGGGTACCTAGCAATTTCATCTGATATGGATGAATTAGACTCTGATTCAAGGAAAAGGGCTTCCCTCAAGAGCAAGAGAGAATTTGACCCATCTGATTAGCCTCTTCTCACAAAAGCACATCTCCTTGTCAGTTTATTTAATTCAAGCGACGCTTCTGTACCTTCTCTTAAATGCTGGTTTACAAAATATGCTGCTGTGCACTAGAAATATTACCTTTGAAAATAGTACCTGCACTTAGGATGATTGTCATCGTTATTGCTCGAAGCTACATATCTCAGCAAGTGTTTTCAAAAAAAAAA ]
[+] EMBL AA753395 [ AAGGA GGCA TTGG TTGANA TATCAAG TTGCAAACA CCCA CTGGCTTGAAGGAGG TG GC CCTTNCTGATTTCCTTGGGGGGCAAAGATCATGGA GTATTGGTTGG TGCATGCACGA CCAACCAGTCTGTAGG TNTGATAATAGCCCTTTACTGG TGAAACAGATAACAGGACAGGCGAGAAAAGGAGGATACTTTATGGGTACCTAGCAATTTCATCTGATATGGATGAATTAGACTCTGATTCAAGGAAAAGGGCTTCCCTCAAGAGCAAGAGAGAATTTGACCCATCTGATTAGCCTCTTCTCACAAAAGCACATCTCCTTGTCAGTTTATTTAATTCAAGCGACGCTTCTGTACCTTCTCTTAAATGCTGGTTTACAAAATATGCTGCTGTGCACTAGAAATATTACCTTTGAAAATAGTACCTGCACTTAGGATGATTGTCATCGTTATTGCTCGAAGCTACATATCTCAGCAAGTGTTTTCAAAAAAAAAA ]
consensusID : consensus_9965#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 546 fasta sequence
[TCCCGCGCGGGGCCGGCCATGAAGTCTGGCCGCCGCATCACCCGCCGCCGCCGCCGCAGCAGCAGCAGCTGCAGCTGGCGCAGCACGACGCCAAGCGGAAGCACCTCGCCGAGCACGACGAGGGCTTCCACAGCAGGCACCCCAAGCAACCCCGGTTCGAGGCGGCCCCGCCGCAGCAGCAGCAGCTGCCACCGCATGCCGCGGTGGACCGGCACGCGCTCAGGAGGGCGTTTCTCAAGTACGCCAAGATGCTCAACGAGAGCGCGGCGCAGAGGCGGAGCTACCTTGAAGGTGGACGCGTCCCCTGCCTTGCCTGCGGCAGAACTAGGTTTTGCTGGTGGCAAGTCGAAGTCCTTGTATGGAAAGGAAGGGCACTTGGGTTTGACACTTATCAAGTTTGCAAACAGCCCAGCTGGCTTGAAGGAGGCTGAGCGCCTTGCTGATTTCCTTGAGAGATAACAGGACAGGCGAGAAAAGGAGGATACTTTATGGGTACCTAGCAATTTCATCTGATATGGATGAATTAGACTCTGATTCAAGGAAAAG]
[+] EMBL CA753204 [TCCCGCGCGGGGCCGGCCATGAAGTCTGGCCGCCGCATCACCCGCCGCCGCCGCCGCAGCAGCAGCAGCTGCAGCTGGCGCAGCACGACGCCAAGCGGAAGCACCTCGCCGAGCACGACGAGGGCTTCCACAGCAGGCACCCCAAGCAACCCCGGTTCGAGGCGGCCCCGCCGCAGCAGCAGCAGCTGCCACCGCATGCCGCGGTGGACCGGCACGCGCTCAGGAGGGCGTTTCTCAAGTACGCCAAGATGCTCAACGAGAGCGCGGCGCAGAGGCGGAGCTACCTTGAAGGTGGACGCGTCCCCTGCCTTGCCTGCGGCAGAACTAGGTTTTGCTGGTGGCAAGTCGAAGTCCTTGTATGGAAAGGAAGGGCACTTGGGTTTGACACTTATCAAGTTTGCAAACAGCCCAGCTGGCTTGAAGGAGGCTGAGCGCCTTGCTGATTTCCTTGAGAGATAACAGGACAGGCGAGAAAAGGAGGATACTTTATGGGTACCTAGCAATTTCATCTGATATGGATGAATTAGACTCTGATTCAAGGAAAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9965#0 AATTCCCCAATCCATCGCGAATCCGATGAAGAACCCTAACCCTCCTCACCCCAAGCACTC 60
consensus_9965#1 ------------------------------------------------------------
consensus_9965#0 CTCCTCCTCCGCCGCCGCCGCCGCGATGGCGCCCCGCAAGTCGCGCTGGGGCCCGCCGCC 120
consensus_9965#1 ------------------------------------------------------------
consensus_9965#0 GCCCGCCGGGGAGAAGGGGGCGGGGGCGGCGTCCACCTCCGCGCGCACCCCGACCCCGAC 180
consensus_9965#1 ------------------------------------------------------------
consensus_9965#0 CCCGTCTACGGCCGGCGACCCCAGGCGGCATCCGCCTCCTCCTGGCCCTGGCGCGCGCAA 240
consensus_9965#1 ------------------------------------------------------------
consensus_9965#0 CCCCGCCGCGTCGTCGGCCGCCGCCTTCCGTCCTCCGCCGCAGCCGCAGCAGCAGCCGCG 300
consensus_9965#1 ------------------------------------------------------------
consensus_9965#0 GGTGGAGACCCCTCCCCCGCCGTCGTACGGCTTCCACAACCTGGACCGCCGCACCATGCT 360
consensus_9965#1 ------------------------------------------------------------
consensus_9965#0 CCTCGCCGACGGCAGCGTGCGCACCTACTTCGCCCTGCCGCCTGATTACCCCTTCGAGCT 420
consensus_9965#1 ------------------------------------------------------------
consensus_9965#0 CACCCCTCTGCCCCAGCTCCCGCACCTCCCGCGCGGGGCCGGCCATGAAGTCTGGCCGCC 480
consensus_9965#1 --------------------------TCCCGCGCGGGGCCGGCCATGAAGTCTGGCCGCC 34
**********************************
consensus_9965#0 GCATCACCCGCCGCCGCCGCCGCAGCAGCAGCAGCTGCAGCTGGCGCAGCACGACGCCAA 540
consensus_9965#1 GCATCACCCGCCGCCGCCGCCGCAGCAGCAGCAGCTGCAGCTGGCGCAGCACGACGCCAA 94
************************************************************
consensus_9965#0 GCGGAAGCACCTCGCCGAGCACGACGAGGGCTTCCACAGCAGGCACCCCAAGCAACCCCG 600
consensus_9965#1 GCGGAAGCACCTCGCCGAGCACGACGAGGGCTTCCACAGCAGGCACCCCAAGCAACCCCG 154
************************************************************
consensus_9965#0 GTTCGAGGCGGCACCGCCGCAGCAGCAGCAGCTGCCACCGCATGCCGCGGTGGACCGGCA 660
consensus_9965#1 GTTCGAGGCGGCCCCGCCGCAGCAGCAGCAGCTGCCACCGCATGCCGCGGTGGACCGGCA 214
************ ***********************************************
consensus_9965#0 CGCGCTCAGGAGGGCGTTTCTCAAGTACGCCAAGATGCTCAACGAGAGCGCGGCGCAGAG 720
consensus_9965#1 CGCGCTCAGGAGGGCGTTTCTCAAGTACGCCAAGATGCTCAACGAGAGCGCGGCGCAGAG 274
************************************************************
consensus_9965#0 GCGGAGCTACCTTGAAGGTGGACGCGTCCCCTGCCTTGCCTGCGGCAGGTCTTCTAAGGA 780
consensus_9965#1 GCGGAGCTACCTTGAAGGTGGACGCGTCCCCTGCCTTGCCTGCGGCAGAACT-----AGG 329
************************************************ ** *
consensus_9965#0 CTTTGCTGATGTGCATGGACTTGTCATGCATGCTTACAACCCACCAAATGTGGATTCATT 840
consensus_9965#1 TTTTGCTGGTG-GCA---AGTCGAAGTCCTTGTATGGAA---AGGAAGGGCACTTGGGTT 382
******* ** *** * * * * * ** * ** * ** * * **
consensus_9965#0 CATTGACCATCTTGGTTTGCACAAGGCACTATGCGTCCTTATGGGATGGGAT--TATACA 898
consensus_9965#1 TGACACTTATCA-AGTTTGCAAACAGCCCAGCTGGCTTGAAGGAGGCTGAGCGCCTTGCT 441
*** ******* * ** * * * * * * * *
consensus_9965#0 AAAGTCCCTGAAA-ATTCTAAGGCATACCAGTCATTGCTCCCTGACCTTGTTCAAGCAAG 957
consensus_9965#1 GATTTCCTTGAGAGATAACAGGACAGGCGAGAAAAGGAG----GATACTTTATGGGTACC 497
* *** *** * ** * * ** * ** * * ** * * * *
consensus_9965#0 TAGGGAGGACCTTATCATATGGCCACCAACTGTTATCATTCACAACACTGCTACAGGGAG 1017
consensus_9965#1 TAGCAA---TTTCATCTGATATGGATGAATTA-----------GACTCTGATTCAAGGAA 543
*** * * *** ** * ** * ** *** * ** ***
consensus_9965#0 GAAGAAAGATGGCCGCGCTGAGGGTTTGGGGAATAAAGAAATGGATAAGAAAATTTCAGA 1077
consensus_9965#1 AAG--------------------------------------------------------- 546
*
consensus_9965#0 ACTAGGTTTTGCTGGTGGCAAGTCGAAGTCCTTGTATGGAAAGGAAGGGCACTTGGGTTT 1137
consensus_9965#1 ------------------------------------------------------------
consensus_9965#0 GACACTTATCAAGTTTGCAAACAGCCCAGCTGGCTTGAAGGAGGCTGAGCGCCTTGCTGA 1197
consensus_9965#1 ------------------------------------------------------------
consensus_9965#0 TTTCCTTGAGAGGCAAGATCATGGACGTATTGGTTGGTTGCATGCACGAGCCAACCAGTC 1257
consensus_9965#1 ------------------------------------------------------------
consensus_9965#0 TGTAGGTTCTGATAATAGCCCTTTACTGGTTGAAACAGATAACAGGACAGGCGAGAAAAG 1317
consensus_9965#1 ------------------------------------------------------------
consensus_9965#0 GAGGATACTTTATGGGTACCTAGCAATTTCATCTGATATGGATGAATTAGACTCTGATTC 1377
consensus_9965#1 ------------------------------------------------------------
consensus_9965#0 AAGGAAAAGGGCTTCCCTCAAGAGCAAGAGAGAATTTGACCCATCTGATTAGCCTCTTCT 1437
consensus_9965#1 ------------------------------------------------------------
consensus_9965#0 CACAAAAGCACATCTCCTTGTCAGTTTATTTAATTCAAGCGACGCTTCTGTACCTTCTCT 1497
consensus_9965#1 ------------------------------------------------------------
consensus_9965#0 TAAATGCTGGTTTACAAAATATGCTGCTGTGCACTAGAAATATTACCTTTGAAAATAGTA 1557
consensus_9965#1 ------------------------------------------------------------
consensus_9965#0 CCTGCACTTAGGATGATTGTCATCGTTATTGCTCGAAGCTACATATCTCAGCAAGTGTTT 1617
consensus_9965#1 ------------------------------------------------------------
consensus_9965#0 TCAAAAAAAAAACATTGCTTACTGATTGAATGGTTGTCCTGGAGAGTATTTATTCTTCCA 1677
consensus_9965#1 ------------------------------------------------------------
consensus_9965#0 ATTTTATGATTACT 1691
consensus_9965#1 --------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||