cluster # 9982

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Oryza sativa
cluster # 9982 cluster # 9982 Sequences # 7 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9982#0 length = 1947 sequences # 4
consensus_9982#1 length = 866 sequences # 1

consensus_9982#2 length = 646 sequences # 1
consensus_9982#3 length = 314 sequences # 1

consensusID : consensus_9982#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1947
fasta sequence

                              [GCCTGACCCGTATCCCAATTCAACTATGAATATCTCTGTTGAAGAAACTGTTTTTGTTACGACAGACATAGATGGAATAATTGTTGAAGCAAACAAACCTAAGACGAAAAACAATGGAAAAGGCAAGAGGAAGGTCTAAAGAAAAGGTTATCAATGGAATGGCACGTTGGAAAGAATAAGGAAAACACTCTTACTGATTATGAAATACGTCGCAAAGGTGTCATAGCAGCAAACAATGAGATGTTACAATCTCTAAACCTCCCGCCCATGGGCAGCAATACGCATGTTCAACAACGACCCAAGAAAATACCTAAGGTAACTGATGGTAGAAACATGGTGCCATGTGGAGATCATAACTTGCGGTCTAGGTCAAGAAATAACCTAGAGGAAAATGTAGATGAAAATGTTGGCGATGATCCTGAATACCAACTAGAAGAAGATGCCATGGATGACAATGA---AGATGTAGAAGAAACTCTTGAACTTGAAAAAGTTCAGCAGAAAAAGAAGGAAGGAAGGGGTATCACTCAAAAGCTCAACATAATTTCAAGGGTGGGTGAAGCTAAAATCAAAATTACTCTCAACGAATTTGGTCAGCCGGTGGGGCTTGATTCTGAGGAATTTGCCACTACTTTTGGGACATTTGTGAGAAAGACAATACCTGTTGCATGTGGTGATTGGACAGATGTTGACGTCAAAGACAAGCTGAAAGTATGGGAAAATGTACAGAGACATTATGAGATCNATGAATATGGTTTACATTTTGTGTTGGAGACATCACATATGATATGGAAGGATTATAAGGCTGATTTGAAGAAGAAACATTTTGATGCAAATCTGACTGATGAGGAACTTATGGACAGACGTGACTTAAGAGTCAACGAGGCACAATGGAAGTGGCTTATTAACCATTGGAGATCTCCAGAAGCTGTGGCCCGCTCCATAAGAGGCAAGGCAAATCGCGGAATGTTGCGCATGTTACATACAGCTGGTAGCAAGAGCCACGCTCGTGTTGGCCATGACATGGGTGTGAAAACTGGGCGTCCTCCTAGAAGGGATGAAGTCTTTGTTGAAACGCACAAACGAAAAAATGGAGAAATTATTCCAGAGGCTGCAGAAACAGTTGAAATGCTAAAAGAGGCTGCAGAAGTTAACCCAGAGTTGAAGAACAAAACAATCCAGGAGGGCGATTTGTATTCACGTGTTTGTGGAACCAAGGAACCAAGAGGCCGTGTTCGTGTTTTAGGAAAGGGACCAACTCCTCAGGATGTGGGCACACCAGGAACACGTAGCAGAATGCCAACAAGACTTCAGCTAGAAATAGAATCTCATCGACAGACCAAACAAGAAGTTGTATGTCTGAATAAACGCATGGACGACATGCAACAACGTTTTAACATAATGGAGCATATGGTTATGTCTCAAGGTGTGCAGAATATAGAAACAAGTTCCCATCATGCTTCTAATTCTCGACATGCTGAGAGCCCAAGGAGTCCAGTACTTGAAGAGCTGCATCCTAATGAGCCTACCAATAGGCACTTGCTGGAGGAGCCTCATGCTGAGCCTACCAGTAGGCACTT-GGATAATATCCTATCGGGTGATGACTTTATTATCCGCAAAAAAGCTATAACGCCAAGGGTGCCCTCAAGAAACACAGCCACAGGAA-GCCATGAAGCCACCATTGC-TGAA-GGA-GAAAATCTTGTT--GGTAAAGATG-TTATCTTATA-TGCTGTCTTGAGATCTGACACCCCTGTGGCTAAAGCAACAATTGTATCAATTCATCCAAGTTCCTTGGTGGGAGGTCAACCTCTAGGTGTTGAATTCTATGAAGTTGTTGTCAATGTCGTGCTTAAAAGAGATGCATTGCTTCCTCGTCCATATGATGATATGCAAACTATGACATGGGTGTGAAAACTGGGCGTCCTCCTAGAAGGGATGAAGTCTTTGTTGAAA]

[+] EMBL CB673987             [GCCTGACCCGTATCCCAATTCAACTATGAATATCTCTGTTGAAGAAACTGTTTTTGTTACGACAGACATAGATGGAATAATTGTTGAAGCAAACAAACCTAAGACGAAAAACAATGGAAAAGGCAAGAGGAAGGTCTAAAGAAAAGGTTATCAATGGAATGGCACGTTGGAAAGAATAAGGAAAACACTCTTACTGATTATGAAATACGTCGCAAAGGTGTCATAGCAGCAAACAATGAGATGTTACAATCTCTAAACCTCCCGCCCATGGGCAGCAATACGCATGTTCAACAACGACCCAAGAAAATACCTAAGGTAACTGATGGTAGAAACATGGTGCCATGTGGAGATCATAACTTGCGGTCTAGGTCAAGAAATAACCTAGAGGAAAATGTAGATGAAAATGTTGGCGATGATCCTGAATACCAACTAGAAGAAGATGCCATGGATGACAATGA   AGATGTAGAAGAAACTCTTGAACTTGAAAAAGTTCAGCAGAAAAAGAAGGAAGGAAGGGGTATCACTCAAAAGCTCAACATAATTTCAAGGGTGGGTGAAGCTAAAATCAAAATTACTCTCAACGAATTTGGTCAGCCGGTGGGGCTTGATTCTGAGGAATTTGCCACTACTTTTGGGACATTTGTGAGAAAGACAATACCTGTTGCATGTGGTGATTGGACAGATGTTGACGTCAAAGACAAGCTGAAAGTATGGGAAAATGTACAGAGACATTATGAGATCNATGAATATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AK064576             [                                                                           AATAATTGTTGAAGCAAACAAACCTAAGACGAAAAACAATGGAAAAGGCAAGAGGAAGGTCTAAAGAAAAGGTTATCAATGGAATGGCA GTTGGAAAGAATAAGGAAAACACTCTTACTGATTATGAAATACGTCGCAAAGGTGTCATAGCAGCAAACAATGAGATGTTACAATCTCTAAACCTCCCGCCCATGGGCAGCAATACGCATGTTCAACAACGACCCAAGAAAATACCTAAGGTAACTGATGGTAGAAACATGGTGCCATGTGGAGATCATAACTTGCGGTCTAGGTCAAGAAATAACCTAGAGGAAAATGTAGATGAAAATGTTGGCGATGATCCTGAATACCAACTAGAAGAAGATGCCATGGATGACAATGAAGTAGATGTAGAAGAAACTCTTGAACTTGAAAAAGTTCAGCAGAAAAAGAAGGAAGGAAGGGGTATCACTCAAAAGCTCAACATAATTTCAAGGGTGGGTGAAGCTAAAATCAAAATTACTCTCAACGAATTTGGTCAGCCGGTGGGGCTTGATTCTGAGGAATTTGCCACTACTTTTGGGACATTTGTGAGAAAGAAAATACCTGTTGCATGTGGTGATTGGAGAGATGTTGACGTCAAAGACAAGCTGAAAGTATGGGAAGATGTACAGAAACATTATGAGATCAATGAATATGGTTTACATTTTGTGTTGGAGACATCACATATGATATGGAAGGATTATAAGGCTGATTTGAAGAAGAAACATTTTGATGCAAATCTGACTGATGAGGAACTTATGGACAGACGTGACTTAAGAGTCAACGAGGCACAATGGAAGTGGCTTATTAACCATTGGAGATCTCCAGAAGCTGTGGCCCGCTCCATAAGAGGCAAGGCAAATCGCGGAATGTTGCGCATGTTACATACAGCTGGTAGCAAGAGCCACGCTCGTGTTGGCCATGACATGGGTGTGAAAACTGGGCGTCCTCCTAGAAGGGATGAAGTCTTTGTTGAAACGCACAAACGAAAAAATGGAGAAATTATTCCAGAGGCTGCAGAAACAGTTGAAATGCTAAAAGAGGCTGCAGAAGTTAACCCAGAGTTGAAGAACAAAACAATCCAGGAGGGCGATTTGTATTCACGTGTTTGTGGAACCAAGGAACCAAGAGGCCGTGTTCGTGTTTTAGGAAAGGGACCAACTCCTCAGGATGTGGGCACACCAGGAACACGTAGCAGAATGCCAACAAGACTTCAGCTAGAAATAGAATCTCATCGACAGACCAAACAAGAAGTTGTATGTCTGAATAAACGCATGGACGACATGCAACAACGTTTTAACATAATGGAGCATATGGTTATGTCTCAAGGTGTGCAGAATATAGAAACAAGTTCCCATCATGCTTCTAATTCTCGACATGCTGAGAGCCCAAGGAGTCCAGTACTTGAAGAGCTGCATCCTAATGAGCCTACCAATAGGCACTTGCTGGAGGAGCCTCATGCTGAGCCTACCAGTAGGCACTT GGATAATATCCTATCGGGTGATGACTTTATTATCCGCAAAAAAGCTATAACGCCAAGGGTGCCCTCAAGAAACACAGCCACAGGAA GCCATGAAGCCACCATTGC TGAA GGA GAAAATCTTGTT  GGTAAAGATG TTATCTTATA TGCTGTCTTGAGATCTGACACCCCTGTGGCTAAAGCAACAATTGTATCAATTCATCCAAGTTCCTTGGTGGGAGGTCAACCTCTAGGTGTTGAATTCTATGAAGTTGTTGTCAATGTCGTGCTTAAAAGAGATGCATTGCTTCCTCGTCCATATGATGATATGCAAACTATGACATGGGTGTGAAAACTGGGCGTCCTCCTAGAAGGGATGAAGTCTTTGTTGAAA]
[+] EMBL C25896               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AGAAATAGAATCTCATCGACAGACCAAACAAGAAGTTGTATGTCTGAATAAACGCATGGACGACATGCAACAACGTTTTAACATAATGGAGCATATGGTTATGTCTCAAGGTGTGCAGAATATAGAAACAAGTTCCCATCATGCTTCTAATTCTCGACATGCTGAGAGCCCAAGGAGTCCAGTACTTGAAGAGCTGCATCCTAATGAGCCTACCAATAGGCACTTGCTGGAGGAGCCTCATGCTGAGCCTACCAGTAGGCACTTGGGATAATATCCTATCGGGTGATGACTTTATTATCCGCAAAAAAGCTATAACGCCAAGGGTGCCCTCAAGAAACACAGCCACAGGAAGGCCATGAANGCACCATTGCTTGAAGGGAGGAAAATCTTGTTTNGGTAAAGATGTTTATCTNATATTGCTGTCT                                                                                                                                                                                                                          ]
[+] EMBL AA750215             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GAAGTTGTATGTCTGAATAAACGCATGGACGACATGCAACAACGTTTTAACATAATGGAGCATATGGTTATGTCTCAAGGTGTGCAGAATATAGAAACAAGTTCCCATCATGCTTCTAATTCTCGACATGCTGAGAGCCCAAGGAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]




>consensus_9982#0
GCCTGACCCGTATCCCAATTCAACTATGAATATCTCTGTTGAAGAAACTGTTTTTGTTAC
GACAGACATAGATGGAATAATTGTTGAAGCAAACAAACCTAAGACGAAAAACAATGGAAA
AGGCAAGAGGAAGGTCTAAAGAAAAGGTTATCAATGGAATGGCACGTTGGAAAGAATAAG
GAAAACACTCTTACTGATTATGAAATACGTCGCAAAGGTGTCATAGCAGCAAACAATGAG
ATGTTACAATCTCTAAACCTCCCGCCCATGGGCAGCAATACGCATGTTCAACAACGACCC
AAGAAAATACCTAAGGTAACTGATGGTAGAAACATGGTGCCATGTGGAGATCATAACTTG
CGGTCTAGGTCAAGAAATAACCTAGAGGAAAATGTAGATGAAAATGTTGGCGATGATCCT
GAATACCAACTAGAAGAAGATGCCATGGATGACAATGAAGATGTAGAAGAAACTCTTGAA
CTTGAAAAAGTTCAGCAGAAAAAGAAGGAAGGAAGGGGTATCACTCAAAAGCTCAACATA
ATTTCAAGGGTGGGTGAAGCTAAAATCAAAATTACTCTCAACGAATTTGGTCAGCCGGTG
GGGCTTGATTCTGAGGAATTTGCCACTACTTTTGGGACATTTGTGAGAAAGACAATACCT
GTTGCATGTGGTGATTGGACAGATGTTGACGTCAAAGACAAGCTGAAAGTATGGGAAAAT
GTACAGAGACATTATGAGATCNATGAATATGGTTTACATTTTGTGTTGGAGACATCACAT
ATGATATGGAAGGATTATAAGGCTGATTTGAAGAAGAAACATTTTGATGCAAATCTGACT
GATGAGGAACTTATGGACAGACGTGACTTAAGAGTCAACGAGGCACAATGGAAGTGGCTT
ATTAACCATTGGAGATCTCCAGAAGCTGTGGCCCGCTCCATAAGAGGCAAGGCAAATCGC
GGAATGTTGCGCATGTTACATACAGCTGGTAGCAAGAGCCACGCTCGTGTTGGCCATGAC
ATGGGTGTGAAAACTGGGCGTCCTCCTAGAAGGGATGAAGTCTTTGTTGAAACGCACAAA
CGAAAAAATGGAGAAATTATTCCAGAGGCTGCAGAAACAGTTGAAATGCTAAAAGAGGCT
GCAGAAGTTAACCCAGAGTTGAAGAACAAAACAATCCAGGAGGGCGATTTGTATTCACGT
GTTTGTGGAACCAAGGAACCAAGAGGCCGTGTTCGTGTTTTAGGAAAGGGACCAACTCCT
CAGGATGTGGGCACACCAGGAACACGTAGCAGAATGCCAACAAGACTTCAGCTAGAAATA
GAATCTCATCGACAGACCAAACAAGAAGTTGTATGTCTGAATAAACGCATGGACGACATG
CAACAACGTTTTAACATAATGGAGCATATGGTTATGTCTCAAGGTGTGCAGAATATAGAA
ACAAGTTCCCATCATGCTTCTAATTCTCGACATGCTGAGAGCCCAAGGAGTCCAGTACTT
GAAGAGCTGCATCCTAATGAGCCTACCAATAGGCACTTGCTGGAGGAGCCTCATGCTGAG
CCTACCAGTAGGCACTTGGATAATATCCTATCGGGTGATGACTTTATTATCCGCAAAAAA
GCTATAACGCCAAGGGTGCCCTCAAGAAACACAGCCACAGGAAGCCATGAAGCCACCATT
GCTGAAGGAGAAAATCTTGTTGGTAAAGATGTTATCTTATATGCTGTCTTGAGATCTGAC
ACCCCTGTGGCTAAAGCAACAATTGTATCAATTCATCCAAGTTCCTTGGTGGGAGGTCAA
CCTCTAGGTGTTGAATTCTATGAAGTTGTTGTCAATGTCGTGCTTAAAAGAGATGCATTG
CTTCCTCGTCCATATGATGATATGCAAACTATGACATGGGTGTGAAAACTGGGCGTCCTC
CTAGAAGGGATGAAGTCTTTGTTGAAA

consensusID : consensus_9982#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 866
fasta sequence

                              [TCAAGGTGTGCAGAATATAGAAACAAGTTCCCATCATGCTTCTACTTCTCGACATGCTGAGAGCCCAAGGAGTCCAGTACTTGAAGAGCTGCATAATTCAAATCAGGAGGTGCGTCCTAATGAGCCTACCAATAGGCACTTGCTGGAGGAGCCTCATGCTGAGCCTACCAGTAGGCACTTGGATAATATCCTATCGGGTGATGACTTTATTATCCGCAAAAAAGCTATAACGCCAAGGGTGCCCTCAAGAAACACAGCCACAAGAAGCCACGAAGCCACCATTGCTGAAGGAGAAAATCTTGTTGGTAAAGATGTTATCTTATATACTGTCTTGAGATCTGACACCCCTGTGGCTAAAGCAACAATTGTATCAATTGATCCAAGTTCCTTGGTGGGAGGTCAACCTCTAGGTGTTGAATTCTATGAAGTTGTTGTCAATGTCGTGCTGAAAAGAGATGCATTGCTTCCTCGTCCATATGATGATATGCAGACTATGGCTGATGCTCAGTACACATCCATTGCATGGCCAAACAATAGGNTGAATGNTAGCAAGAGGTCTGCTATGTCCAAAAGTGCTAACTCCAAAAGTGCANGGGGTTGGTCAGTCTGGATAACAAAATGCTGGCTGCAAAAGGGAGTATTTTTGGTCAAATGGGGGGCTGATGAAAAACTACCCAACTTAAGGTAGGNGCACTTTTTANAAAACCATGTAACTTGTATGCCTTTTTGTAGTAAACACTGGCTTGNCCCCTTGATCGGTTCAACAACTGGTGGTTAGAANCATGNTAAGCCTTTTTGGAGGAATGGACTTGNGAGNTTGACATGGAANCCTGGGGNCAACCAAACTGGATGGTTTNAAANCCATG]

[+] EMBL CA765957             [TCAAGGTGTGCAGAATATAGAAACAAGTTCCCATCATGCTTCTACTTCTCGACATGCTGAGAGCCCAAGGAGTCCAGTACTTGAAGAGCTGCATAATTCAAATCAGGAGGTGCGTCCTAATGAGCCTACCAATAGGCACTTGCTGGAGGAGCCTCATGCTGAGCCTACCAGTAGGCACTTGGATAATATCCTATCGGGTGATGACTTTATTATCCGCAAAAAAGCTATAACGCCAAGGGTGCCCTCAAGAAACACAGCCACAAGAAGCCACGAAGCCACCATTGCTGAAGGAGAAAATCTTGTTGGTAAAGATGTTATCTTATATACTGTCTTGAGATCTGACACCCCTGTGGCTAAAGCAACAATTGTATCAATTGATCCAAGTTCCTTGGTGGGAGGTCAACCTCTAGGTGTTGAATTCTATGAAGTTGTTGTCAATGTCGTGCTGAAAAGAGATGCATTGCTTCCTCGTCCATATGATGATATGCAGACTATGGCTGATGCTCAGTACACATCCATTGCATGGCCAAACAATAGGNTGAATGNTAGCAAGAGGTCTGCTATGTCCAAAAGTGCTAACTCCAAAAGTGCANGGGGTTGGTCAGTCTGGATAACAAAATGCTGGCTGCAAAAGGGAGTATTTTTGGTCAAATGGGGGGCTGATGAAAAACTACCCAACTTAAGGTAGGNGCACTTTTTANAAAACCATGTAACTTGTATGCCTTTTTGTAGTAAACACTGGCTTGNCCCCTTGATCGGTTCAACAACTGGTGGTTAGAANCATGNTAAGCCTTTTTGGAGGAATGGACTTGNGAGNTTGACATGGAANCCTGGGGNCAACCAAACTGGATGGTTTNAAANCCATG]




>consensus_9982#1
TCAAGGTGTGCAGAATATAGAAACAAGTTCCCATCATGCTTCTACTTCTCGACATGCTGA
GAGCCCAAGGAGTCCAGTACTTGAAGAGCTGCATAATTCAAATCAGGAGGTGCGTCCTAA
TGAGCCTACCAATAGGCACTTGCTGGAGGAGCCTCATGCTGAGCCTACCAGTAGGCACTT
GGATAATATCCTATCGGGTGATGACTTTATTATCCGCAAAAAAGCTATAACGCCAAGGGT
GCCCTCAAGAAACACAGCCACAAGAAGCCACGAAGCCACCATTGCTGAAGGAGAAAATCT
TGTTGGTAAAGATGTTATCTTATATACTGTCTTGAGATCTGACACCCCTGTGGCTAAAGC
AACAATTGTATCAATTGATCCAAGTTCCTTGGTGGGAGGTCAACCTCTAGGTGTTGAATT
CTATGAAGTTGTTGTCAATGTCGTGCTGAAAAGAGATGCATTGCTTCCTCGTCCATATGA
TGATATGCAGACTATGGCTGATGCTCAGTACACATCCATTGCATGGCCAAACAATAGGNT
GAATGNTAGCAAGAGGTCTGCTATGTCCAAAAGTGCTAACTCCAAAAGTGCANGGGGTTG
GTCAGTCTGGATAACAAAATGCTGGCTGCAAAAGGGAGTATTTTTGGTCAAATGGGGGGC
TGATGAAAAACTACCCAACTTAAGGTAGGNGCACTTTTTANAAAACCATGTAACTTGTAT
GCCTTTTTGTAGTAAACACTGGCTTGNCCCCTTGATCGGTTCAACAACTGGTGGTTAGAA
NCATGNTAAGCCTTTTTGGAGGAATGGACTTGNGAGNTTGACATGGAANCCTGGGGNCAA
CCAAACTGGATGGTTTNAAANCCATG

consensusID : consensus_9982#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 646
fasta sequence

                              [TCTTATATGCTGTCTTGAGATCTGACACCCCTGTGGCTAAAGCAACAATTGTATCAATTCATCCAAGTTCCTTGGTGGGAGGTCACCCTCTAGGTGTTGAATTTTATGAAGTTGTTGTCAATGTCGTGCTTAAAAGAGAAGCATTGCTTCCTCGTCCATATGATGATATGCAAACTATGGCTGATGCTCAGTACACATCCATTGCATGGCCAAACAATAGGTTGAATGTTAGCAAGAGGTTTGCTATGTCCAAAAGTGCTAACTCCAAAAGTGCAGGGGTTGTTCAGTCTGGATAACAAAATGCTGGCTGCAAAGGGAGTATTTTGGTCAAATGGTGGCTGATGAAAATTACCACCTTAGGGTAGTGCCCTTTTAGAAACCATGTAACTTGTATCCCTTTTGTAGTAAACACTGCTTGTCCCTTGATCGTTTCAACAACTGATGTTAGAAGCATGTTTGGAGTAATGACTTGTAGTTGACATGAACCTGTGACAACAAACTGATGTTAGAAGCATGTGAGCTTTTGGAGTAATGATTCGTAGTGGACATGACCCTATGATAGGGCAGCAATATACATGTTGATGTAATTTTCGGGGCTAATGTCTGGAATTAGGGGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CB673988             [TCTTATATGCTGTCTTGAGATCTGACACCCCTGTGGCTAAAGCAACAATTGTATCAATTCATCCAAGTTCCTTGGTGGGAGGTCACCCTCTAGGTGTTGAATTTTATGAAGTTGTTGTCAATGTCGTGCTTAAAAGAGAAGCATTGCTTCCTCGTCCATATGATGATATGCAAACTATGGCTGATGCTCAGTACACATCCATTGCATGGCCAAACAATAGGTTGAATGTTAGCAAGAGGTTTGCTATGTCCAAAAGTGCTAACTCCAAAAGTGCAGGGGTTGTTCAGTCTGGATAACAAAATGCTGGCTGCAAAGGGAGTATTTTGGTCAAATGGTGGCTGATGAAAATTACCACCTTAGGGTAGTGCCCTTTTAGAAACCATGTAACTTGTATCCCTTTTGTAGTAAACACTGCTTGTCCCTTGATCGTTTCAACAACTGATGTTAGAAGCATGTTTGGAGTAATGACTTGTAGTTGACATGAACCTGTGACAACAAACTGATGTTAGAAGCATGTGAGCTTTTGGAGTAATGATTCGTAGTGGACATGACCCTATGATAGGGCAGCAATATACATGTTGATGTAATTTTCGGGGCTAATGTCTGGAATTAGGGGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_9982#2
TCTTATATGCTGTCTTGAGATCTGACACCCCTGTGGCTAAAGCAACAATTGTATCAATTC
ATCCAAGTTCCTTGGTGGGAGGTCACCCTCTAGGTGTTGAATTTTATGAAGTTGTTGTCA
ATGTCGTGCTTAAAAGAGAAGCATTGCTTCCTCGTCCATATGATGATATGCAAACTATGG
CTGATGCTCAGTACACATCCATTGCATGGCCAAACAATAGGTTGAATGTTAGCAAGAGGT
TTGCTATGTCCAAAAGTGCTAACTCCAAAAGTGCAGGGGTTGTTCAGTCTGGATAACAAA
ATGCTGGCTGCAAAGGGAGTATTTTGGTCAAATGGTGGCTGATGAAAATTACCACCTTAG
GGTAGTGCCCTTTTAGAAACCATGTAACTTGTATCCCTTTTGTAGTAAACACTGCTTGTC
CCTTGATCGTTTCAACAACTGATGTTAGAAGCATGTTTGGAGTAATGACTTGTAGTTGAC
ATGAACCTGTGACAACAAACTGATGTTAGAAGCATGTGAGCTTTTGGAGTAATGATTCGT
AGTGGACATGACCCTATGATAGGGCAGCAATATACATGTTGATGTAATTTTCGGGGCTAA
TGTCTGGAATTAGGGGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_9982#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 314
fasta sequence

                              [CTTGTATNCCTTTTGTAGTAAACACTGCTTGNCCCTTGATCGTTTCAACAACTGATGTTAGAAGCATGTTTGGAGTAATGACTTGTAGTTGACATGAACCTGTGACAACAAACTGATGTTAGAAGCATGTGAGCTTTTGGAGTAATGACTCGTAGTTGACATGAACCTATGATAGGGCAGCAATATACATGTTGATGTAATCTTCGGGGCTAATGTCTGGAATTTGGTGTCTACTTCCACTCTTTTGCTAGTTGCAATTATCAGTAATTTGCTATTGAATTGGAATGTGAAAAGTTGGTTGTAAAAAAAAAAAA]

[+] EMBL AU100649             [CTTGTATNCCTTTTGTAGTAAACACTGCTTGNCCCTTGATCGTTTCAACAACTGATGTTAGAAGCATGTTTGGAGTAATGACTTGTAGTTGACATGAACCTGTGACAACAAACTGATGTTAGAAGCATGTGAGCTTTTGGAGTAATGACTCGTAGTTGACATGAACCTATGATAGGGCAGCAATATACATGTTGATGTAATCTTCGGGGCTAATGTCTGGAATTTGGTGTCTACTTCCACTCTTTTGCTAGTTGCAATTATCAGTAATTTGCTATTGAATTGGAATGTGAAAAGTTGGTTGTAAAAAAAAAAAA]




>consensus_9982#3
CTTGTATNCCTTTTGTAGTAAACACTGCTTGNCCCTTGATCGTTTCAACAACTGATGTTA
GAAGCATGTTTGGAGTAATGACTTGTAGTTGACATGAACCTGTGACAACAAACTGATGTT
AGAAGCATGTGAGCTTTTGGAGTAATGACTCGTAGTTGACATGAACCTATGATAGGGCAG
CAATATACATGTTGATGTAATCTTCGGGGCTAATGTCTGGAATTTGGTGTCTACTTCCAC
TCTTTTGCTAGTTGCAATTATCAGTAATTTGCTATTGAATTGGAATGTGAAAAGTTGGTT
GTAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9982#2      ------------------------------------------------------------
consensus_9982#3      ------------------------------------------------------------
consensus_9982#1      ------------------------------------------------------------
consensus_9982#0      GCCTGACCCGTATCCCAATTCAACTATGAATATCTCTGTTGAAGAAACTGTTTTTGTTAC 60
                                                                                  

consensus_9982#2      ------------------------------------------------------------
consensus_9982#3      ------------------------------------------------------------
consensus_9982#1      -----------------------------------TCAAGGTGTGCAGAATATAGAAACA 25
consensus_9982#0      GACAGACATAGATGGAATAATTGTTGAAGCAAACAAACCTAAGACGAAAAACAATGGAAA 120
                                                                                  

consensus_9982#2      ------------------------------------------------------------
consensus_9982#3      ------------------------------------------------------------
consensus_9982#1      AGTTCCCATCATGCTTCTACTTCTCGACATGCTGAGAGCCCAAGGAGTCCAGTACTTGAA 85
consensus_9982#0      AGGCAAGAGGAAGGTCTAAAGAAAAGGTTATCAATGGAATGGCACGTTGGAAAGAATAAG 180
                                                                                  

consensus_9982#2      ----------TCTTATATGCTGTCTTGAGATCTGACACCCCTGTGGCTAAAGCAACAATT 50
consensus_9982#3      ------------------------------------------------------------
consensus_9982#1      GAGCTGCATAATTCAAATCAGGAGGTGCGTCCTAATGAGCCTACCAATAGGCACTTGCTG 145
consensus_9982#0      GAAAACACTCTTACTGATTATGAAATACGTCGCAAAGGTGTCATAGCAGCAAACAATGAG 240
                                                                                  

consensus_9982#2      GTATCAATTCATCCAAGTTCCTTGGTGGGAGGTCACCCTCTAGGTGTTGAATTTTATGAA 110
consensus_9982#3      ------------------------------------------------------------
consensus_9982#1      GAGGAGCCTCATGCTGAGCCTACCAGTAGGCACTTGGATAATATCCTATCGGGTGATGAC 205
consensus_9982#0      ATGTTACAATCTCTAAACCTCCCGCCCATGGGCAGCAATACGCATGTTCAACAACGACCC 300
                                                                                  

consensus_9982#2      GTTGTTGTCAATGTCGTGCTTAAAAGAGAAGCATTGCTTCCTCG---TCCATATGATGAT 167
consensus_9982#3      ------------------------------------------------------------
consensus_9982#1      TTTATTATCCGCAAAAAAGCTATAACGCCAAGGGTGCCCTCAAGAAACACAGCCACAAGA 265
consensus_9982#0      AAGAAAATACCTAAGGTAACTGATGGTAGAAACATGGTGCCATG---TGGAGATCATAAC 357
                                                                                  

consensus_9982#2      ATGCAAACTATGGCTGATGCTCAGTACACATCCATTGCATGGCCAAACAATAGGTTGAAT 227
consensus_9982#3      ------------------------------------------------------------
consensus_9982#1      AGCCACGAAGCCACCATTGCTGAAGGAGAAAATCTTGTTGGTAAAGATGTTATCTTATAT 325
consensus_9982#0      TTGCGGTCTAGGTCAAGAAATAACCTAGAGGAAAATGTAGATGAAAATGTTGGCGATGAT 417
                                                                                  

consensus_9982#2      GTTAGCAAGAGGTTTGCTATGTCCAAAAGTGCTAACTCCAAAAGTGCAGGGGTTGTTCAG 287
consensus_9982#3      ------------------------------------------------------------
consensus_9982#1      ACTGTCTTGAGATCTGACACCCCTGTGGCTA--AAGCAACAATTGTATCAATTGATCCAA 383
consensus_9982#0      CCTGAATACCAACTAGAAGAAGATGCCATGGATGACAATGAAGATGTAGAAGAAACTC-- 475
                                                                                  

consensus_9982#2      TCTGGATAACAAAATGCTGGCTGCAAAGGGAGTATTTTGGTCAAATGGTGGCTGATGAAA 347
consensus_9982#3      ------------------------------------------------------------
consensus_9982#1      GTTCCTTGGTGGGAGGTCAACCTCTAGGTGTTGAATTCTATGAAGTTGTTGTCAATGTCG 443
consensus_9982#0      TTGAACTTGAAAAAGTTCAGCAGAAAAAGAAGGAAGGAAGGGGTATCACTCAAAAGCTCA 535
                                                                                  

consensus_9982#2      ATTACCACCTTAGGGTAGTGCCCTTTTAGAAACCATGTAACTTGTATCCCTTTTGT-AGT 406
consensus_9982#3      ----------------------------------------CTTGTATNCCTTTTGT-AGT 19
consensus_9982#1      TGCTGAAAAGAGATGCATTGCTTCCTCGTCCATATGATGATATGCAGACTATGGCT-GAT 502
consensus_9982#0      ACATAATTTCAAGGGTGGGTGAAGCTAAAATCAAAATTACTCTCAACGAATTTGGTCAGC 595
                                                                *  *     *   *    

consensus_9982#2      AAACACTGCTTGTCCCTTGATCGTTTCAACAACTG-----ATGTTAGAAGCATGTTTG-- 459
consensus_9982#3      AAACACTGCTTGNCCCTTGATCGTTTCAACAACTG-----ATGTTAGAAGCATGTTTG-- 72
consensus_9982#1      GCTCAGTACACATCCATTGCATGGCCAAACAATAGGNTGAATGNTAGCAAGAGGTCTGCT 562
consensus_9982#0      CGGTGGGGCTTGATTCTGAGGAATTT--GCCACTA------CTTTTGGGACATTTGTGAG 647
                              *       *            * *            * *    *  * **  

consensus_9982#2      --------GAGTAATGACTTGTAGTTGACATGAACCTGT--------GACAACAAACTGA 503
consensus_9982#3      --------GAGTAATGACTTGTAGTTGACATGAACCTGT--------GACAACAAACTGA 116
consensus_9982#1      ATGTCCAAAAGTGCTAACTCCAAAAGTGCANGGGGTTGGTCAGTCTGGATAACAAAATGC 622
consensus_9982#0      AAAGACAATACCTGTTGCATGTGGTGATTGGACAGATGTT-------GACGTCAAAGACA 700
                               *    *  *                  **         **   ****    

consensus_9982#2      TG-TTAGAAGCATGTGAGCTTTTGGAGTAATGATTCG----TAGTGGACATG------AC 552
consensus_9982#3      TG-TTAGAAGCATGTGAGCTTTTGGAGTAATGACTCG----TAGTTGACATG------AA 165
consensus_9982#1      TGGCTGCAAAAGGGAGTATTTTTGGTCAAATGGGGGG----CTGATGAAAAACTACCCAA 678
consensus_9982#0      AG-CTGAAAGTATGGGAAAATGTACAGAGACATTATGAGATCNATGAATATGGTTTACAT 759
                       *  *  **    * *    * *      *      *          * *        * 

consensus_9982#2      CCTATGATAGGGCAGCAATATACATGTTGATGTAATTTTCGGGGCTAATGTCTGGAATTA 612
consensus_9982#3      CCTATGATAGGGCAGCAATATACATGTTGATGTAATCTTCGGGGCTAATGTCTGGAATTT 225
consensus_9982#1      CTTAAGGTAGGNGCACTTTTTANAAAACCATGTAACTTGTATGCCTTTTTGTAGTAAACA 738
consensus_9982#0      TTTGTGTTGGAGACATCACATATGATATGGAAGGAT-TATAAGGCTGATTTGAAGAAGAA 818
                        *  * * *          **            *  *    * **  *      **   

consensus_9982#2      GGGGTTTAAAAAAAAAAA--AAAAAAAAAAAA-AAAA----------------------- 646
consensus_9982#3      GGTGTCTACTTCCACTCT--TTTGCTAGTTGC-AATTATCAG---TAATTTGCTAT-TGA 278
consensus_9982#1      CTGGCTTGNCCCCTTGAT--CGGTTCAACAACTGGTGGTTAG---AANCATGNTAAGCCT 793
consensus_9982#0      ACATTTTGATGCAAATCTGACTGATGAGGAACTTATGGACAGACGTGACTTAAGAGTCAA 878
                            *                   *                                 

consensus_9982#2      ------------------------------------------------------------
consensus_9982#3      ATTGGAATGTGAAAAGTTGGTTGTAAAAAAAAAAAA------------------------ 314
consensus_9982#1      TTTTGGAGGAATGGACTTGNGAGNTTGACATGGAANCCTGGGGNCAACCAAACTGGATGG 853
consensus_9982#0      CGAGGCACAATGGAAGTGGCTTATTAACCATTGGAGATCTCCAGAAGCTGTGGCCCGCTC 938
                                                                                  

consensus_9982#2      ------------------------------------------------------------
consensus_9982#3      ------------------------------------------------------------
consensus_9982#1      TTTNAAANCCATG----------------------------------------------- 866
consensus_9982#0      CATAAGAGGCAAGGCAAATCGCGGAATGTTGCGCATGTTACATACAGCTGGTAGCAAGAG 998
                                                                                  

consensus_9982#2      ------------------------------------------------------------
consensus_9982#3      ------------------------------------------------------------
consensus_9982#1      ------------------------------------------------------------
consensus_9982#0      CCACGCTCGTGTTGGCCATGACATGGGTGTGAAAACTGGGCGTCCTCCTAGAAGGGATGA 1058
                                                                                  

consensus_9982#2      ------------------------------------------------------------
consensus_9982#3      ------------------------------------------------------------
consensus_9982#1      ------------------------------------------------------------
consensus_9982#0      AGTCTTTGTTGAAACGCACAAACGAAAAAATGGAGAAATTATTCCAGAGGCTGCAGAAAC 1118
                                                                                  

consensus_9982#2      ------------------------------------------------------------
consensus_9982#3      ------------------------------------------------------------
consensus_9982#1      ------------------------------------------------------------
consensus_9982#0      AGTTGAAATGCTAAAAGAGGCTGCAGAAGTTAACCCAGAGTTGAAGAACAAAACAATCCA 1178
                                                                                  

consensus_9982#2      ------------------------------------------------------------
consensus_9982#3      ------------------------------------------------------------
consensus_9982#1      ------------------------------------------------------------
consensus_9982#0      GGAGGGCGATTTGTATTCACGTGTTTGTGGAACCAAGGAACCAAGAGGCCGTGTTCGTGT 1238
                                                                                  

consensus_9982#2      ------------------------------------------------------------
consensus_9982#3      ------------------------------------------------------------
consensus_9982#1      ------------------------------------------------------------
consensus_9982#0      TTTAGGAAAGGGACCAACTCCTCAGGATGTGGGCACACCAGGAACACGTAGCAGAATGCC 1298
                                                                                  

consensus_9982#2      ------------------------------------------------------------
consensus_9982#3      ------------------------------------------------------------
consensus_9982#1      ------------------------------------------------------------
consensus_9982#0      AACAAGACTTCAGCTAGAAATAGAATCTCATCGACAGACCAAACAAGAAGTTGTATGTCT 1358
                                                                                  

consensus_9982#2      ------------------------------------------------------------
consensus_9982#3      ------------------------------------------------------------
consensus_9982#1      ------------------------------------------------------------
consensus_9982#0      GAATAAACGCATGGACGACATGCAACAACGTTTTAACATAATGGAGCATATGGTTATGTC 1418
                                                                                  

consensus_9982#2      ------------------------------------------------------------
consensus_9982#3      ------------------------------------------------------------
consensus_9982#1      ------------------------------------------------------------
consensus_9982#0      TCAAGGTGTGCAGAATATAGAAACAAGTTCCCATCATGCTTCTAATTCTCGACATGCTGA 1478
                                                                                  

consensus_9982#2      ------------------------------------------------------------
consensus_9982#3      ------------------------------------------------------------
consensus_9982#1      ------------------------------------------------------------
consensus_9982#0      GAGCCCAAGGAGTCCAGTACTTGAAGAGCTGCATCCTAATGAGCCTACCAATAGGCACTT 1538
                                                                                  

consensus_9982#2      ------------------------------------------------------------
consensus_9982#3      ------------------------------------------------------------
consensus_9982#1      ------------------------------------------------------------
consensus_9982#0      GCTGGAGGAGCCTCATGCTGAGCCTACCAGTAGGCACTTGGATAATATCCTATCGGGTGA 1598
                                                                                  

consensus_9982#2      ------------------------------------------------------------
consensus_9982#3      ------------------------------------------------------------
consensus_9982#1      ------------------------------------------------------------
consensus_9982#0      TGACTTTATTATCCGCAAAAAAGCTATAACGCCAAGGGTGCCCTCAAGAAACACAGCCAC 1658
                                                                                  

consensus_9982#2      ------------------------------------------------------------
consensus_9982#3      ------------------------------------------------------------
consensus_9982#1      ------------------------------------------------------------
consensus_9982#0      AGGAAGCCATGAAGCCACCATTGCTGAAGGAGAAAATCTTGTTGGTAAAGATGTTATCTT 1718
                                                                                  

consensus_9982#2      ------------------------------------------------------------
consensus_9982#3      ------------------------------------------------------------
consensus_9982#1      ------------------------------------------------------------
consensus_9982#0      ATATGCTGTCTTGAGATCTGACACCCCTGTGGCTAAAGCAACAATTGTATCAATTCATCC 1778
                                                                                  

consensus_9982#2      ------------------------------------------------------------
consensus_9982#3      ------------------------------------------------------------
consensus_9982#1      ------------------------------------------------------------
consensus_9982#0      AAGTTCCTTGGTGGGAGGTCAACCTCTAGGTGTTGAATTCTATGAAGTTGTTGTCAATGT 1838
                                                                                  

consensus_9982#2      ------------------------------------------------------------
consensus_9982#3      ------------------------------------------------------------
consensus_9982#1      ------------------------------------------------------------
consensus_9982#0      CGTGCTTAAAAGAGATGCATTGCTTCCTCGTCCATATGATGATATGCAAACTATGACATG 1898
                                                                                  

consensus_9982#2      -------------------------------------------------
consensus_9982#3      -------------------------------------------------
consensus_9982#1      -------------------------------------------------
consensus_9982#0      GGTGTGAAAACTGGGCGTCCTCCTAGAAGGGATGAAGTCTTTGTTGAAA 1947