cluster # 9983

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9983 cluster # 9983 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9983#0 length = 1028 sequences # 5

consensus_9983#1 length = 444 sequences # 1
consensus_9983#2 length = 323 sequences # 1

consensusID : consensus_9983#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1028
fasta sequence

                              [AAAAAAGATGATAAAAGTATTTGACTTAGGTCAATGGAGGGAGTAGCTAAGTTTACCACGGTTATCGGCTTTATCAAGGTAATACAATCGACGAAACCGCTCGGGAAACCAGCCAAGTTAGAGAAAAGAAAACCGAAAGTCCAATTTTCAGCAAATTTGTTTGAATTCTACCCCCTTTTTGTGTTTGTTAGTAATCGAAGTGAAACCACGGTTACCGGAAGAGCCAAAAGCACTTAAGAAGTTATGATTCCCTGCAGACTCCTTATTTTA-CAAATGCAGATGATGCTTGTCTGTCTGTATT-TTCATTGCCCAAACCCCCTCAAGTTAAATCAGAGACAACTGAAAAGAGAAGATACAAAACAACACTTCTTACATGACACAT-AAAACCAAAAAAGAAAAGAGAAATCAACACCACACACATCTACAAACCATCTCTGAATCTTGTTCAGTTTTCTGCTCCTAATGACAGCAACAGTGAAGAGTGACATGATCACAACAGCTTTTGCAGGCAATGCCGGCGACGGCGGCGGCGTTCGGTCAGGCGAAGCGCTTGCGACGGCCATCGATGGTGGCGAGGAGGCGGGCGACGCCCTTGGTCCACATGTCATGCTCTCTCTGGCTGCCGCACTCGAACTCGATCACCCGGTGCTCCGCGGTGCGGAGCCCGAAGTACCGCCGGTGCTCGCCGCCCTCTAGCAGGTGCCTCCCCGGCCACGCCGCCACGTCCCTGCACACGTCCACCACCACATTCTTCTTCTTCTTGGTGAGCGTGCCCGCGACGTGCCGGCTCTTCATCTTGAGCATCACCACTCCCGTCCGATGGATGTAGACCGAGACCACCTTCCAATGCAAAGCTCCTTTGCGAGTGCGCTTGAGGAGCTCGGTGCCACGGGCGAGGAGCTCTTGGCTGCAGATGGTGAGGAAGTTGTTGTCGTCGTCGTCGTCGTCGTCGACGGCGGCGACCTCGTCGCTGAAGCTGCTGCTCGTGTTGCTGCCGTTGCCATGGTGGCGGTGGTGATGCTGCTGCT]

[+] EMBL BI801772             [AAAAAAGATGATAAAAGTATTTGACTTAGGTCAATGGAGGGAGTAGCTAAGTTTACCACGGTTATCGGCTTTATCAAGGTAATACAATCGACGAAACCGCTCGGGAAACCAGCCAAGTTAGAGAAAAGAAAACCGAAAGTCCAATTTTCAGCAAATTTGTTTGAATTCTACCCCCTTTTTGTGTTTGTTAGTAATCGAAGTGAAACCACGGTTACCGGAAGAGCCAAAAGCACTTAAGAAGTTATGATTCCCTGCAGACACCACATATTACCAAATGCAGATGATGCTTGTCTGTCTGTATT TTCATTGCCC AACCCCCTCAAGTTAAATCAGAGACAACTGAAAAGAGAAGATACACAACTACACTTCTTACATGACACATCAAAACCAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB653456             [                                                                                                                                                                                                                                                                   TCCTTTTTTTA C AATGCAGATGATGCTTGTCTGTCTGTATTCCTCATTGCCCAAACCCCCTCAAGTTAAATCAGAGACAACTGAAAAGAGAAGATACAAAACAACACTTCTTACATGACACAT AAAACCAAAAAAGAAAAGAGAAATCAACACCACACACATCTACAAACCATCTCTGAATCTTGTTCAGTTTTCTGCTCCTAATGACAGCAACAGTGAAGAGTGACATGATCACAACAGCTTTTGCAGGCAATGCCGGCGACGGCGGCGGCGTTCGGTCAGGCGAAGCGCTTGCGACGGCCATCGATGGTGGCGAGGAGGCGGGCGACGCCCTTGGTCCACATGTCATGCTCTCTCTGGCTGCCGCACTCGAACTCGATCACCCGGTGCTCCGCGGTGCGGAGCCCGAAGTACCGCCGGTGCTCGCCGCCCTCTAGCAGGTGCCTCCCCGGCCACGCCGCCACGTCCCTGCACACGTCCACCACCACATTCTTCTTCTTCTTGGTGAGCGTGCCCGCGACGTGCCGGCTCTTCATCTTGAGCATCACCACTCCCGTCCGATGGATGTAGACCGAGACCACCTTCCAATGCAAAGCTCCTTTGCGAGTGCGCTTGAGGAGCTCGGTGCCACGGGCGAGGAGCTCTTGGCTGCAGATGGTGAGGAAGTTGTTGTCGTCGTCGTCGTCGTCGTCGACGGCGGCGACCTCGTCGCTGAAGCTGCTGCTCGTGTTGCTGCCGTTGCCATGGTGGCGGTGGTGATGCTG     ]
[+] EMBL CB655127             [                                                                                                                                                                                                                                                                 tctttTTATTTTA CAAATGCAGATGATGCTTGTCTGTCTGCATT TTCATTGCCCAAACCCCCTCAAGTTAAATCAGAGACAACTGAAAAGAGAAGATACAAAACAACACTTCTTACATGACACAT AAAACCAAAAAAGAAAAGAGAAATCAACACCACACACATCTACAAACCATCTCTGAATCTTGTTCAGTTTTCTGCTCCTAATGACAGCAACAGTGAAGAGTGACATGATCACAACAGCTTTTGCAGGCAATGCCGGCGACGGCGGCGGCGTTCGGTCAGGCGAAGCGCTTGCGACGGCCATCGATGGTGGCGAGGAGGCGGGCGACGCCCTTGGTCCACATGTCATGCTCTCTCTGGCTGCCGCACTCGAACTCGATCACCCGGTGCTCCGCGGTGCGGAGCCCGAAGTACCGCCGGTGCTCGCCGCCCTCTAGCAGGTGCCTCCCCGGCCACGCCGCCACGTCCCTGCACACGTCCACCACCACATTCTTCTTCTTCTTGGTGAGCGTGCCCGCGACGTGCCGGCTCTTCATCTTGAGCATCACCACTCCCGTCCGATGGATGTAGACCGAGACCACCTTCCAATGCAAAGCTCCTTTGCGAGTGCGCTTGAGGAGCTCGGTGCCACGGGCGAGGAGCTCTTGGCTGCAGATGGTGAGGAAGTTGTTGTCGTCGTCGTCGTCGTCGTCGACGGCGGCGACCTCGTCGCTGAAGCTGCTGCTCGTGTTGCTGCCGTTGCCATGGTGGCGGTGGTGATGCTGCTG  ]
[+] EMBL AA753454             [                                                                                                                                                                                                                                                                   tttTTTTTTTA CAAATGCAGATGATGCTTGTCTGTCTGTATT TTCATTGCCCAAACCCCCTCAAGTTAAATCAGAGACAACTGAAAAGAGAAGATACAAAACAACACTTCTTACATGACACAT AAAACCAAAAAAGAAAAGAGAAATCAACACCACACACATCTACAAACCATCTCTGAATCTTGTTCAGTTTTCTGCTCCTAATGACAGCAACAGTGAAGAGTGACATGATCACAACAGCTTTTGCAGGCAATGCCGGCGACGGCGGCGGCGTTCGGTCAGGCGAAGCGCTTGCGACGGGCATCGATGGTGGCGAAGAAGCGGGCGACGCCCTTGGTCCACATGTCATGCTCTCTCTGGCTGCCGCACTCGAACTCGATCACCC GTGCTCCGCGGTGCGGA NCCGAAGTACCGCCGGTGCTCGCCG CCTCCA CAGGTG CT CCCGG CAC CCGCCAC T CCTGCAatt                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB632929             [                                                                                                                                                                                                                                                                                                                          AACCCCCTCAAGTTAAATCAGAGACAACTGAAAAGAGAAGATACAAAACAACACTTCTTACATGACACAT AAAACCAAAAAAGAAAAGAGAAATCAACACCACACACATCTACAAACCATCTCTGAATCTTGTTCAGTTTTCTGCTCCTAATGACAGCAACAGTGAAGAGTGACATGATCACAACAGCTTTTGCAGGCAATGCCGGCGACGGCGGCGGCGTTCGGTCAGGCGAAGCGCTTGCGACGGCCATCGATGGTGGCGAGGAGGCGGGCGACGCCCTTGGTCCACATGTCATGCTCTCTCTGGCTGCCGCACTCGAACTCGATCACCCGGGGCTCCGCGGGGCGGAGCCCGAAGTACCGCCGGGGCTCGCCGCCCTCCAGCAGGTGCCTCCCCGGCCACGCCGCCACGTCCCTGCACACGTCCACCACCACATTCTTCTTCTTCTTGGTGAGCGTGCCCGCGACGTGCCGGCTCTTCATCTTGAGCATCACCACTCCCGTCCGATGGATGTAGACCGAGACCACCTTCCAATGCAAAGCTCCTTTGCGAGTGCGCTTGAGGAGCTCGGTGCCACGGGCGAGGAGCTCTTGGCTGCAGATGGTGAGGAAGTTGTTGTCGTCGTCGTCGTCGTCGTCGACGGCGGCGACCTCGTCGCTGAAGCTGCTGCTCGTGTTGCTGCCGTTGCCATGGTGGCGGTGGTGATGCTGCTGCT]




>consensus_9983#0
AAAAAAGATGATAAAAGTATTTGACTTAGGTCAATGGAGGGAGTAGCTAAGTTTACCACG
GTTATCGGCTTTATCAAGGTAATACAATCGACGAAACCGCTCGGGAAACCAGCCAAGTTA
GAGAAAAGAAAACCGAAAGTCCAATTTTCAGCAAATTTGTTTGAATTCTACCCCCTTTTT
GTGTTTGTTAGTAATCGAAGTGAAACCACGGTTACCGGAAGAGCCAAAAGCACTTAAGAA
GTTATGATTCCCTGCAGACTCCTTATTTTACAAATGCAGATGATGCTTGTCTGTCTGTAT
TTTCATTGCCCAAACCCCCTCAAGTTAAATCAGAGACAACTGAAAAGAGAAGATACAAAA
CAACACTTCTTACATGACACATAAAACCAAAAAAGAAAAGAGAAATCAACACCACACACA
TCTACAAACCATCTCTGAATCTTGTTCAGTTTTCTGCTCCTAATGACAGCAACAGTGAAG
AGTGACATGATCACAACAGCTTTTGCAGGCAATGCCGGCGACGGCGGCGGCGTTCGGTCA
GGCGAAGCGCTTGCGACGGCCATCGATGGTGGCGAGGAGGCGGGCGACGCCCTTGGTCCA
CATGTCATGCTCTCTCTGGCTGCCGCACTCGAACTCGATCACCCGGTGCTCCGCGGTGCG
GAGCCCGAAGTACCGCCGGTGCTCGCCGCCCTCTAGCAGGTGCCTCCCCGGCCACGCCGC
CACGTCCCTGCACACGTCCACCACCACATTCTTCTTCTTCTTGGTGAGCGTGCCCGCGAC
GTGCCGGCTCTTCATCTTGAGCATCACCACTCCCGTCCGATGGATGTAGACCGAGACCAC
CTTCCAATGCAAAGCTCCTTTGCGAGTGCGCTTGAGGAGCTCGGTGCCACGGGCGAGGAG
CTCTTGGCTGCAGATGGTGAGGAAGTTGTTGTCGTCGTCGTCGTCGTCGTCGACGGCGGC
GACCTCGTCGCTGAAGCTGCTGCTCGTGTTGCTGCCGTTGCCATGGTGGCGGTGGTGATG
CTGCTGCT

consensusID : consensus_9983#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 444
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAAAACAACACTTCTTACATGACACATAAAACCAAAAAAGAAAAGAGAAATCAACACCACACACATCTACAAACCATCTCTGAATCTTGTTCAGTTTTCTGCTCCTAATGACAGCAACAGTGAAGAGTGACATGATCACAACAGCTTTTGCAGGCAATGCCGGCGACGGGGCGGCGTTCGGTCAGGCGAANGCTTGCGACGGCCATCGATGGTGGCGAGGAGGCGGGCGACGCCCTTGGTCCACATGTCATGCTCTCTCTGGCTGCCGCACTCGAACTCGATCACCCGGTGCTCCGCGGTGCGGACCCGAAGTACCGCCGGTGCTCGCCGCCCTCTAGCAGGTGCCTCCCCGGCCACGCCGCCACGTCCCTGCACACGTCCACCACCACATTCTTCTTCTTCTT]

[-] EMBL AU162216             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAAAACAACACTTCTTACATGACACATAAAACCAAAAAAGAAAAGAGAAATCAACACCACACACATCTACAAACCATCTCTGAATCTTGTTCAGTTTTCTGCTCCTAATGACAGCAACAGTGAAGAGTGACATGATCACAACAGCTTTTGCAGGCAATGCCGGCGACGGGGCGGCGTTCGGTCAGGCGAANGCTTGCGACGGCCATCGATGGTGGCGAGGAGGCGGGCGACGCCCTTGGTCCACATGTCATGCTCTCTCTGGCTGCCGCACTCGAACTCGATCACCCGGTGCTCCGCGGTGCGGACCCGAAGTACCGCCGGTGCTCGCCGCCCTCTAGCAGGTGCCTCCCCGGCCACGCCGCCACGTCCCTGCACACGTCCACCACCACATTCTTCTTCTTCTT]




>consensus_9983#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAAAACAACACTTCTTACAT
GACACATAAAACCAAAAAAGAAAAGAGAAATCAACACCACACACATCTACAAACCATCTC
TGAATCTTGTTCAGTTTTCTGCTCCTAATGACAGCAACAGTGAAGAGTGACATGATCACA
ACAGCTTTTGCAGGCAATGCCGGCGACGGGGCGGCGTTCGGTCAGGCGAANGCTTGCGAC
GGCCATCGATGGTGGCGAGGAGGCGGGCGACGCCCTTGGTCCACATGTCATGCTCTCTCT
GGCTGCCGCACTCGAACTCGATCACCCGGTGCTCCGCGGTGCGGACCCGAAGTACCGCCG
GTGCTCGCCGCCCTCTAGCAGGTGCCTCCCCGGCCACGCCGCCACGTCCCTGCACACGTC
CACCACCACATTCTTCTTCTTCTT

consensusID : consensus_9983#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 323
fasta sequence

                              [CTTGTTNAGTTTTCTGCTCCTAATGACAGCAACAGTGAAGAGTGACATGATCACAACAGCTTTTGCAGGCAATGNGNCGACGGCGNCGTNGTTCGGTCAGGCGAAGCGCTTGCGACGGCCATCGATGGTGGNGAGGACGNGGCGACGCCCTTGGTCCACATGTNATGCTCTCTCTGNTGCCGNACTCGAACTCGATCACNCCGGTNCCGGTGCGGAGCCCGAAGTACCGCCGGTNTCGCNGCCCTCTAGCAGGTCCTCCCGGCCACGCCGCCACGTCCCTGCACACGTCCACCACCACATTCTTCTTCTTCATTGGGTNGAAN]

[-] EMBL OSC575               [CTTGTTNAGTTTTCTGCTCCTAATGACAGCAACAGTGAAGAGTGACATGATCACAACAGCTTTTGCAGGCAATGNGNCGACGGCGNCGTNGTTCGGTCAGGCGAAGCGCTTGCGACGGCCATCGATGGTGGNGAGGACGNGGCGACGCCCTTGGTCCACATGTNATGCTCTCTCTGNTGCCGNACTCGAACTCGATCACNCCGGTNCCGGTGCGGAGCCCGAAGTACCGCCGGTNTCGCNGCCCTCTAGCAGGTCCTCCCGGCCACGCCGCCACGTCCCTGCACACGTCCACCACCACATTCTTCTTCTTCATTGGGTNGAAN]




>consensus_9983#2
CTTGTTNAGTTTTCTGCTCCTAATGACAGCAACAGTGAAGAGTGACATGATCACAACAGC
TTTTGCAGGCAATGNGNCGACGGCGNCGTNGTTCGGTCAGGCGAAGCGCTTGCGACGGCC
ATCGATGGTGGNGAGGACGNGGCGACGCCCTTGGTCCACATGTNATGCTCTCTCTGNTGC
CGNACTCGAACTCGATCACNCCGGTNCCGGTGCGGAGCCCGAAGTACCGCCGGTNTCGCN
GCCCTCTAGCAGGTCCTCCCGGCCACGCCGCCACGTCCCTGCACACGTCCACCACCACAT
TCTTCTTCTTCATTGGGTNGAAN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9983#0      AAAAAAGATGATAAAAGTATTTGACTTAGGTCAATGGAGGGAGTAGCTAAGTTTACCACG 60
consensus_9983#2      ------------------------------------------------------------
consensus_9983#1      ------------------------------------------------------------
                                                                                  

consensus_9983#0      GTTATCGGCTTTATCAAGGTAATACAATCGACGAAACCGCTCGGGAAACCAGCCAAGTTA 120
consensus_9983#2      ------------------------------------------------------------
consensus_9983#1      ------------------------------------------------------------
                                                                                  

consensus_9983#0      GAGAAAAGAAAACCGAAAGTCCAATTTTCAGCAAATTTGTTTGAATTCTACCCCCTTTTT 180
consensus_9983#2      ------------------------------------------------------------
consensus_9983#1      ------------------------------------------------------------
                                                                                  

consensus_9983#0      GTGTTTGTTAGTAATCGAAGTGAAACCACGGTTACCGGAAGAGCCAAAAGCACTTAAGAA 240
consensus_9983#2      ------------------------------------------------------------
consensus_9983#1      ------------------------------------------------------------
                                                                                  

consensus_9983#0      GTTATGATTCCCTGCAGACTCCTTATTTTACAAATGCAGATGATGCTTGTCTGTCTGTAT 300
consensus_9983#2      ------------------------------------------------------------
consensus_9983#1      ------------------------------------------------------------
                                                                                  

consensus_9983#0      TTTCATTGCCCAAACCCCCTCAAGTTAAATCAGAGACAACTGAAAAGAGAAGATACAAAA 360
consensus_9983#2      ------------------------------------------------------------
consensus_9983#1      ---------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAAAA 45
                                                                                  

consensus_9983#0      CAACACTTCTTACATGACACATAAAACCAAAAAAGAAAAGAGAAATCAACACCACACACA 420
consensus_9983#2      ------------------------------------------------------------
consensus_9983#1      CAACACTTCTTACATGACACATAAAACCAAAAAAGAAAAGAGAAATCAACACCACACACA 105
                                                                                  

consensus_9983#0      TCTACAAACCATCTCTGAATCTTGTTCAGTTTTCTGCTCCTAATGACAGCAACAGTGAAG 480
consensus_9983#2      --------------------CTTGTTNAGTTTTCTGCTCCTAATGACAGCAACAGTGAAG 40
consensus_9983#1      TCTACAAACCATCTCTGAATCTTGTTCAGTTTTCTGCTCCTAATGACAGCAACAGTGAAG 165
                                          ****** *********************************

consensus_9983#0      AGTGACATGATCACAACAGCTTTTGCAGGCAATGCCGGCGACGGCGGCGGCGTTCGGTCA 540
consensus_9983#2      AGTGACATGATCACAACAGCTTTTGCAGGCAATGN-GNCGACGGCGNCGTNGTTCGGTCA 99
consensus_9983#1      AGTGACATGATCACAACAGCTTTTGCAGGCAATGCCGGCGACGG-GGCGGCGTTCGGTCA 224
                      **********************************  * ****** * **  *********

consensus_9983#0      GGCGAAGCGCTTGCGACGGCCATCGATGGTGGCGAGGAGGCGGGCGACGCCCTTGGTCCA 600
consensus_9983#2      GGCGAAGCGCTTGCGACGGCCATCGATGGTGGNGAGGACGNGG-CGACGCCCTTGGTCCA 158
consensus_9983#1      GGCGAAN-GCTTGCGACGGCCATCGATGGTGGCGAGGAGGCGGGCGACGCCCTTGGTCCA 283
                      ******  ************************ ***** * ** ****************

consensus_9983#0      CATGTCATGCTCTCTCTGGCTGCCGCACTCGAACTCGATCACCCGGTGCTCCGCGGTGCG 660
consensus_9983#2      CATGTNATGCTCTCTCTGN-TGCCGNACTCGAACTCGATCACNC--CGGTNC-CGGTGCG 214
consensus_9983#1      CATGTCATGCTCTCTCTGGCTGCCGCACTCGAACTCGATCACCCGGTGCTCCGCGGTGCG 343
                      ***** ************  ***** **************** *   * * * *******

consensus_9983#0      GAGCCCGAAGTACCGCCGGTGCTCGCCGCCCTCTAGCAGGTGCCTCCCCGGCCACGCCGC 720
consensus_9983#2      GAGCCCGAAGTACCGCCGGTN-TCGCNGCCCTCTAGCAGGT--CCTCCCGGCCACGCCGC 271
consensus_9983#1      GA-CCCGAAGTACCGCCGGTGCTCGCCGCCCTCTAGCAGGTGCCTCCCCGGCCACGCCGC 402
                      ** *****************  **** **************  *  **************

consensus_9983#0      CACGTCCCTGCACACGTCCACCACCACATTCTTCTTCTTC-TTGGTGAGCGTGCCCGCGA 779
consensus_9983#2      CACGTCCCTGCACACGTCCACCACCACATTCTTCTTCTTCATTGGGTNGAAN-------- 323
consensus_9983#1      CACGTCCCTGCACACGTCCACCACCACATTCTTCTTCTTCTT------------------ 444
                      **************************************** *                  

consensus_9983#0      CGTGCCGGCTCTTCATCTTGAGCATCACCACTCCCGTCCGATGGATGTAGACCGAGACCA 839
consensus_9983#2      ------------------------------------------------------------
consensus_9983#1      ------------------------------------------------------------
                                                                                  

consensus_9983#0      CCTTCCAATGCAAAGCTCCTTTGCGAGTGCGCTTGAGGAGCTCGGTGCCACGGGCGAGGA 899
consensus_9983#2      ------------------------------------------------------------
consensus_9983#1      ------------------------------------------------------------
                                                                                  

consensus_9983#0      GCTCTTGGCTGCAGATGGTGAGGAAGTTGTTGTCGTCGTCGTCGTCGTCGTCGACGGCGG 959
consensus_9983#2      ------------------------------------------------------------
consensus_9983#1      ------------------------------------------------------------
                                                                                  

consensus_9983#0      CGACCTCGTCGCTGAAGCTGCTGCTCGTGTTGCTGCCGTTGCCATGGTGGCGGTGGTGAT 1019
consensus_9983#2      ------------------------------------------------------------
consensus_9983#1      ------------------------------------------------------------
                                                                                  

consensus_9983#0      GCTGCTGCT 1028
consensus_9983#2      ---------
consensus_9983#1      ---------