cluster # 9985

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Oryza sativa
cluster # 9985 cluster # 9985 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9985#0 length = 532 sequences # 6

consensus_9985#1 length = 224 sequences # 1

consensusID : consensus_9985#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 532
fasta sequence

                              [AGCAGCAGCAAGCAGGTTAGCTGCTTAGGAGCAATAGACACCGGAGGCCAGGGTCGCCGGCGATCATGTGGCCGGAGAAGATGAGGGCTTGGGCATCCATGGCCGAGGACCCGCTGAAGCGCGCGTCGGCGGCATCGTCGTCGTCGACGAG-CCCGCTGCGGCGCTACAGCCCGGCCACGCTCGCCGCCGG-GGCCTCCTCGTCGGCGCCGTCGCCTACTTCATGTTCAAGG-GGAAGCAGGGCCAAGGAAGGCAAGGCGACCAACCGGTTCGCCGTCCTTAACTAGAAGGAGATCGCTTATATCACCTAGCTTATCTA-GTAATCGCTTGAATAATAATCTCCTCT-CCCTTTGCCTAGCGGTCGGCATCCATGTATAAACCACTATCTTTGTGCTTAGGTTTATGTATCCGTTTTATCCATGAACTGTCAAAGAACATGAACAGAAGTCCTCTCTTTCCTGTCATCCCTTGTAACAGTGTCATTTCGATTTCAACTGAAAAATGCCTGTGGTTAAATCTTCACTTGTATCAAAAA]

[+] EMBL OS0290A              [AGCAGCAGCAAGCAGGTTAGCTGCTTAGGAGCAATAGACACCGGAGGCCAGGGTCGCCGGCGATCATGTGGCCGGAGAAGATGAGGGCTTGGGCATCCATGGCCGAGGACCCGCTGAAGCGCGCGTCGGCGGCATCGTCGTCGTCGACGAG CCCGCTGCGGCGCTACAGCCCGGCCACGCTCGCNGCCGG GGCCTCCTCGTCGGCGCCGTCGCCTACTTCATGTTCAAGGCGGAAGCAGGGCCAAGGAAGGCAAGGCGACCAACCGGTTCGCCGTCCTTAACTAGAAGGAGATCGCTTATATCACCTAGCTTATCTA GTAATCGCTTGAATAATAATCTCCTCT CCCTTTGCCTAGCGGTCGGCATCCATGTATAAACCACTATCTTTGTGCTTAGGTTTATGTATCCGTTTTATCCATGAACTGT AAAG ACATG ACAGAAGTCCTCTCTTT CTGTNAT CCTTGTAACAANGTNATTTCGA TTNAACTGAAA                                   ]
[+] EMBL C28094               [  CAGCAGCAAGCAGGTTAGCTGCNTAGGAGCAATAGACACCGGAGGCCAGGGTCGCCGGCGATCATGTGGCCGGAGAAGATGAGGGCTTGGGCATCCATGGCCGAGGACCCGCTGAAGCGCGCNTCGGCGGCATCGTCGTCGTCGA GAG CCCGCTGCGGCGCTACAGCCCGGCCACGCTCGCCGCCGG GGCCTCCTCGTCGGCGCCGTCGCCTACTTCATGTTCAAGG GGAAGCAGGGCCAAGGAAGGCAAGGCGACCAACCGGTTCGCCGTCCTTAACTAGAAGGAGATCGCTTATATCACCTAGCTTATCTA GTAATCGCTTGANTAATAATCTCCTCTNCCTTTTGCCTAGCGGTCGGCATCCATGTNTAAACCACTATCTTTTTGCTTAGGTTTATGGATCCNTTTTATCCATGNACTGTCAAAGACCATG ACAGAAGTCC                                                                                     ]
[+] EMBL AU092833             [   AGCAGCAAGCAGGTTAGCTGCTTAGGAGCAATAGACACCGGAGGCCAGGGTCGCCGGCGATCATGTGGCCGGAGAAGATGAGGGCTTGGGCATCCATGGCCGAGGACCCGCTGAAGCGCGCGTCGGCGGCATCGTCGTCGTCGACGAG CCCGCTGCGGCGCTACAGCCCGGCCACGCTCGCCGCCGGCGGCCTCCTCGTCGGCGCCGTCGCCTACTTCATGTTCAAGG GGAAGCAGGGCCAAGGAAGGCAAGGCGACCAACCGGTTCGCCGTCCTTAACTAGAAGGAGATCGCTTATATCACCTAGCTTATCTA GTAATCGCTTGAATAATAATCTCCTCT CCCTTTGCCTAGCGGTCGGCATCCATGTATAAACCACTATCTTTGTGCTTAGGTTTATGTATCCGTTTTATCCATGAACTGTCAAAGAACATGAACAGAAGTCCTCTCTTTCCTGTCATCCCTTGTAACAGTGTCATTTCGATTTCAACTGAAAAATGCCTGTGGTTAAATCTTCACTTGTATCAAAAA]
[+] EMBL C74058               [       GCAAGCAGGTTAGCTGCTTAGGAGCAATAGACACCGGAGGCCAGGGTCGCCGGCGATCATGTGGCCGGAGAAGATGAGGGCTTGGGCATCCATGGCCGAGGACCCGCTGAAGCGCGCGTCGGCGGCATCGTCGTCGTCGA GAGACCCGCTGCGGCGCTACAGCCCGGCCACGCTCGCCGCCGG GGCCTCCTCGTCGGCGCCGTCGNCTACTTCATGTTCAAGG GGAAGCAGGGCCAAGGAAGGCAAGGCGACCAACCGGTTCGCCGTCCTTAACTAGAAGGAGATCGCTTATATCACCTAGCTTATCTAGGTAATCGCTTGAAT                                                                                                                                                                                                           ]
[+] EMBL AK107786             [             AGGTTAGCTGCTTAGGAGCAATAGACACCGGAGGCCAGGGTCGCCGGCGATCATGTGGCCGGAGAAGATGAGGGCTTGGGCATCCATGGCCGAGGACCCGCTGAGGCGCGCGTCGGCGGCATCGTCGTCGTCGACGAG CCCGCTGCGGCGCTACAGCCCGGCCACGCTCGCCGCCGGCGGCCTCCTCGTCGGCGCCGTCGCCTACTTCATGTTCAAGG GGAAGCAGGGCCAAGGAAGGCAAGGCGACCAACCGGTTCGCCGTCCTTAACTAGAAGGAGATCGCTTATATCACCTAGCTTATCTA GTAATCGCTTGAATAATAATCTCCTCT CCCTTTGCCTAGCGGTCGGCATCCATGTATAAACCACTATCTTTGTGCTTAGGTTTATGTATCCGTTTTATCCATGAACTGTCAAAGAACATGAACAGAAGTCCTCTCTTTCCTGTCATCCCTTGTAACAGTGTCATTTCGATTTCAACTGAAAAAT                                ]
[+] EMBL AU029389             [                                                                             AAGNTGAGGGCTTGGGCATCCATGGCCGAGGACCCGCTGAAGCGCGCNTCGGCGGCATCGTCGTCGTCGACGAGCCCCGCTGCGGCGCTACAGCCCGGCCACGCTCGCCGCCGGCGGCCTCCTCGTCGGCGCCGTCGCCTACTTCATGTTCAAGG GGAAGCAGGGCCAAGGAAGGCAAGGCGACCAACCGGTTCGCCGTCCTTAACTAGAAGGAGATCGCTTATATCACCTAGCTTATCTA GTAATCGCTTGAATAATAATCTCCTCT CCCTTTGCCTAGCGGTCGGCATCCATGTATAAACCACTATCTTTGTGCTTAGGTTTATGTATCCGTTTTATCCATGAACTGTCAAAGAACATGAACAGAAGTCCTCTCTTTCCTGTCATCCCTTGTAACAGTGTCATTTCGATTTCAACTGAAAAATGCCTGTGGTTAAAaaaaaaa            ]




>consensus_9985#0
AGCAGCAGCAAGCAGGTTAGCTGCTTAGGAGCAATAGACACCGGAGGCCAGGGTCGCCGG
CGATCATGTGGCCGGAGAAGATGAGGGCTTGGGCATCCATGGCCGAGGACCCGCTGAAGC
GCGCGTCGGCGGCATCGTCGTCGTCGACGAGCCCGCTGCGGCGCTACAGCCCGGCCACGC
TCGCCGCCGGGGCCTCCTCGTCGGCGCCGTCGCCTACTTCATGTTCAAGGGGAAGCAGGG
CCAAGGAAGGCAAGGCGACCAACCGGTTCGCCGTCCTTAACTAGAAGGAGATCGCTTATA
TCACCTAGCTTATCTAGTAATCGCTTGAATAATAATCTCCTCTCCCTTTGCCTAGCGGTC
GGCATCCATGTATAAACCACTATCTTTGTGCTTAGGTTTATGTATCCGTTTTATCCATGA
ACTGTCAAAGAACATGAACAGAAGTCCTCTCTTTCCTGTCATCCCTTGTAACAGTGTCAT
TTCGATTTCAACTGAAAAATGCCTGTGGTTAAATCTTCACTTGTATCAAAAA

consensusID : consensus_9985#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 224
fasta sequence

                              [ACCAACCAGCAGCAGCAAGCAGGTTAGCTGCTTAGGAGCAATAGACACCGGAGCCAGGGTCGCCGCGATCATGTGGCGGAGAAGATGAGGGCTTGGGCATCCATGCCGAGACCCTTGAAGCGCGCGTCGGCGGCATCGTCGTTGTCGACGAGCGCGTGCGGCGTACAGCCGGCAGTCGCGCGAGTACTGCTGTCGGGCGTCGCTATTATGTTCAGGAGCAGGCA]

[+] EMBL AA750497             [ACCAACCAGCAGCAGCAAGCAGGTTAGCTGCTTAGGAGCAATAGACACCGGAGCCAGGGTCGCCGCGATCATGTGGCGGAGAAGATGAGGGCTTGGGCATCCATGCCGAGACCCTTGAAGCGCGCGTCGGCGGCATCGTCGTTGTCGACGAGCGCGTGCGGCGTACAGCCGGCAGTCGCGCGAGTACTGCTGTCGGGCGTCGCTATTATGTTCAGGAGCAGGCA]




>consensus_9985#1
ACCAACCAGCAGCAGCAAGCAGGTTAGCTGCTTAGGAGCAATAGACACCGGAGCCAGGGT
CGCCGCGATCATGTGGCGGAGAAGATGAGGGCTTGGGCATCCATGCCGAGACCCTTGAAG
CGCGCGTCGGCGGCATCGTCGTTGTCGACGAGCGCGTGCGGCGTACAGCCGGCAGTCGCG
CGAGTACTGCTGTCGGGCGTCGCTATTATGTTCAGGAGCAGGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9985#0      -------AGCAGCAGCAAGCAGGTTAGCTGCTTAGGAGCAATAGACACCGGAGGCCAGGG 53
consensus_9985#1      ACCAACCAGCAGCAGCAAGCAGGTTAGCTGCTTAGGAGCAATAGACACCGGAG-CCAGGG 59
                             ********************************************** ******

consensus_9985#0      TCGCCGGCGATCATGTGGCCGGAGAAGATGAGGGCTTGGGCATCCATGGCCGAGGACCCG 113
consensus_9985#1      TCGCCG-CGATCATGTGGC-GGAGAAGATGAGGGCTTGGGCATCCATG-CCGAGACCC-- 114
                      ****** ************ **************************** *****  **  

consensus_9985#0      CTGAAGCGCGCGTCGGCGGCATCGTCGTCGTCGACGAGCCCGCTGCGGCGCTACAGCCCG 173
consensus_9985#1      TTGAAGCGCGCGTCGGCGGCATCGTCGTTGTCGACGAGCGCG-TGCGGCG-TACAGCCGG 172
                       *************************** ********** ** ******* ******* *

consensus_9985#0      GCCACGCTCGCCGCCGGGGCCTCCTCGTCGGCGCCGTCGCCTACTTCATGTTCAAGGGGA 233
consensus_9985#1      -------CAGTCGCGCGAGTACTGCTGTCGGG--CGTCGCTA---TTATGTTCAGGAGCA 220
                               * ***  * *       *****   ******     * ******* * * *

consensus_9985#0      AGCAGGGCCAAGGAAGGCAAGGCGACCAACCGGTTCGCCGTCCTTAACTAGAAGGAGATC 293
consensus_9985#1      GGCA-------------------------------------------------------- 224
                       ***                                                        

consensus_9985#0      GCTTATATCACCTAGCTTATCTAGTAATCGCTTGAATAATAATCTCCTCTCCCTTTGCCT 353
consensus_9985#1      ------------------------------------------------------------
                                                                                  

consensus_9985#0      AGCGGTCGGCATCCATGTATAAACCACTATCTTTGTGCTTAGGTTTATGTATCCGTTTTA 413
consensus_9985#1      ------------------------------------------------------------
                                                                                  

consensus_9985#0      TCCATGAACTGTCAAAGAACATGAACAGAAGTCCTCTCTTTCCTGTCATCCCTTGTAACA 473
consensus_9985#1      ------------------------------------------------------------
                                                                                  

consensus_9985#0      GTGTCATTTCGATTTCAACTGAAAAATGCCTGTGGTTAAATCTTCACTTGTATCAAAAA 532
consensus_9985#1      -----------------------------------------------------------