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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9988#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1144 fasta sequence
[GCATGCGTNTGGGCACGATGTTCATGTCGCAATGCTGCTGGGAGCTGCTAAGCTGCTGCAATCACGCAGGGATCATTTCAATGGGAAGGTGAAGCTCGTGTTCCAGCCGGCGGAGGAGGGGTACGCCGGCGGGTACTATGTGCTCGAGGAAGGCGCTGTGGACGATGTGCAGGGCATCTTCGGCATGCACGTCGATGCGGGTTTGCCGGCGGGCGTAGTCGCGTCCAGGCCGGGGCCGTTCCTCGCCGGCTCGGCTCGCTTCACGGCGACCATCAACGGTAAAGGCGGCCACGGGGCGGCGCCCCACCACGACGTCGATCCGATCGTGGCTGTCTCTTCCGCCGTCCTCAGCCTCCAGCAGATTGTTGCTCGCGAGACCGATCCCCTCCAAGGCGCGGTGGTGTCTGTGACCACCATCAAAGGAGGTGAAGCTTTCAATGTCATTCCGGAATCTGTCACTCTGGGCGGCACCTTGAGGAGCATGACAACCGATGGCATGTCTTACCTCATGAAGAGAATCAGAGAGGTGATAGAGGGGCAAGCAGCCGTGAACCGGTGCACGGCGGCGGTGGACTTCATGGAGGATAAGCTCCCGCCATACCCAGCGACGGTGAACGACGAGGAGATGTACGCGCACGCCAAGGCGGTGGCGGAGAGCATGCTCGGGGAGGCCAACGTGAAGCTGTCCCCACAGGGCATGGGGGCGGAGGATTTCGGGTTCTACGCGCAGAGGATCCCGGCCGCCTTCTTCGGCATAGGGGTCGGCAACGATGGCGGCGGGATGGCGGAGACGACGACGAAGAAT-CAGCTGCACTCGCCGCACTTTGTCGTCGACGAGGAAGCGCTCCCCGTCGGAGCCGCCTTCCACGCCGCCGTCGCCATCGAGTACCTCAACAAGAACGCCTCTGGCCCTTCAGCCTGATGCGTCCCGTCAAGGAGCTTAAATCGCCTATGCATGGCTTGGTAATGGGGTTATCTAAGACTATAATAATATCCAAAAATAATGGTCCTACTAGCTACTAGCTGCCCAAGAACAGGCCGTTACAAAAACGTGTAAAAACTATTCCAGTTGGTCAGCACAAGCAGTGATAATAAATTCCCGGATTGTTTTCTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL OSR28431A [GCATGCGTNTGGGCACGATGTTCATGTCGCAATGCTGCTGGGAGCTGCTAAGCTGCTGCAATCACGCAGGGATCATTTCAATGGGAAGGTGAAGCTCGTGTTCCAGCCGGCGGAGGAGGGGTACGCCGGCGGGTACTATGTGCTCGAGGAAGGCGCTGTGGACGATGTGCAGGGCATCTTCGGCATGCACGTCGATGCGGGTTTGCCGGCGGGCGTAGTCGCGTCCAGGCCGGGGCCGTTCCTCGCCGGCTCGGCTCGCTTCACGGCGACCATCAACGGTAAAGGCGGCCACGGGGCGGCGCCCCACCACGACGTCGATCCGATCGTGG ]
[+] EMBL OSS3095A [ GCGTGTGGGCACGATGTTCATNTCGCAATGCTGCTGGGAGCTGCTAAG TGCTGCAATCACGCAGGGATCATTTCANTGGGAAGGTGAAGCTCGTGTTCCAGCCGGCGGAGGAGGGGTACGCCGGCGGGTACTATGTCCTCNAGGAAGGCGCTGTGGACGATGTGCAGGGCATCTNCGGCATNCACGTCGATNCGGGTTTCCCGGCGGGC ]
[+] EMBL AK061197 [ GTTCCAGCCGGCGGAGGAGGGGTACGCCGGCGGGTACTATGTGCTCGAGGAAGGCGCTGTGGACGATGTGCAGGGCATCTTCGGCATGCACGTCGATGCGGGTTTGCCGGCGGGCGTAGTCGCGTCCAGGCCGGGGCCGTTCCTCGCCGGCTCGGCTCGCTTCACGGCGACCATCAACGGTAAAGGCGGCCACGCGGCGGCGCCCCACCACGCCGTCGATCCGATCGTGGCTGTCTCTTCCGCCGTCCTCAGCCTCCAGCAGATTGTTGCTCGCGAGACCGATCCCCTCCAAGGCGCGGTGGTGTCTGTGACCACCATCAAAGGAGGTGAAGCTTTCAATGTCATTCCGGAATCTGTCACTCTGGGCGGCACCTTGAGGAGCATGACAACCGATGGCATGTCTTACCTCATGAAGAGAATCAGAGAGGTGATAGAGGGGCAAGCAGCCGTGAACCGGTGCACGGCGGCGGTGGACTTCATGGAGGATAAGCTCCCGCCATACCCAGCGACGGTGAACGACGAGGAGATGTACGCGCACGCCAAGGCGGTGGCGGAGAGCATGCTCGGGGAGGCCAACGTGAAGCTGTCCCCACAGGGCATGGGGGCGGAGGATTTCGGGTTCTACGCGCAGAGGATCCCGGCCGCCTTCTTCGGCATAGGGGTCGGCAACGATGGCGGCGGGATGGCGGAGACGACGACGAAGAAT CAGCTGCACTCGCCGCACTTTGTCGTCGACGAGGAAGCGCTCCCCGTCGGAGCCGCCTTCCACGCCGCCGTCGCCATCGAGTACCTCAACAAGAACGCCTCTGGCCCTTCAGCCTGATGCGTCCCGTCAAGGAGCTTAAATCGCCTATGCATGGCTTGGTAATGGGGTTATCTAAGACTATAATAATATCCAAAAATAATGGTCCTACTAGCTACTAGCTGCCCAAGAACAGGCCGTTACAAAAACGTGTAAAAACTATTCCAGTTGGTCAGCACAAGCAGTGATAATAAATTCCCG ]
[+] EMBL AU076301 [ GGCATNGGGGCGNAGGATTTCGGGTTCTACGCGCAGAGGATCCCGGCCGCCTTCTTCGGCATAGGGGTCGGCAACGATGGCGGCGGGATGGCGGAGACGACGACGAAGAATCCAGCTGCACTCGCCGCACTTTGTCGTCGACGAGGAAGCGCTCCCCGTCGGAGCCGCCTTCCACGCCGCCGTCGCCATCGAGTACCTCAACAAGAACGCCTCTGGCCCTTCAGCCTGATGCGTCCCGTCAAGGAGCTTAAATCGCCTATGCATGGCTTGGTAATGGGGTTATCTAAGACTATAATAATATCCAAAAATAATGGTCCTACTAGCTACTAGCTGCCCAAGAACAGGCCGTTACAAAAACGTGTAAAAACTATTCCAGTTGGTCAGCACAAGCAGTGATAATAAATTCCCGGATTGTTTTCTTTTAAAAAA ]
[+] EMBL AU097087 [ GGGCNGAGGATTTCGGGTTCTACGCGCAGAGGATCCCGGCCGCCTTNTTCGGCATAGGGGTCGGCAACGATGGCGGCGGGNTGGCGGAGACGACGACGAAGAAT CAGCTGCACTCGCCGCACTTTGTCGTCGACGAGGAAGCGCTCCCCGTCGGAGCCGCCTTCCACGCCGCCGTCGCCATCGAGTACCTCAACAAGAACGCCTCTGGCCCTTCAGCCTGATGCGTCCCGTCAAGGAGCTTAAATCGCCTATGCATGGCTTGGTAATGGGGTTATCTAAGACTATAATAATATCCAAAAATAATGGTCCTACTAGCTACTAGCTGCCCAAGAACAGGCCGTTACAAAAACGTGTAAAAACTATTCCAGTTGGTCAGCACAAGCAGTGATAATAAATTCCCGGATTGTTTTCTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU174211 [ AAT CAGCTGCACTCGCCGCACTTTGTCGTCGACGAGGAAGCGCTCCCCGTCGGAGCCGCCTTCCACGCCGCCGTCGCCATCGAGTACCTCAACAAGAACGCCTCTGGCCCTTCAGCCTGATGCGTCCCGTCAAGGAGCTTAAATCGCCTATGCATGGCTTGGTAATGGGGTTATCTAAGACTATAATAATATCCAAAAATAATGGTCCTACTAGCTACTAGCTGCCCAAGAACAGGCCGTTACAAAAACGTGTAAAAACTATTCCAGTTGGTCAGCACAAGCAGTGATAATAAATTCCCGGATTGTTTTCTTTTAAAAAAA ]
consensusID : consensus_9988#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 296 fasta sequence
[TCCGCCGTCGCCATCGAGTANCCTCAACTAATGAANCGCCTCTGGCCCTTCAGCCTGATGCGTCCCGTCAAGGAGCTTAAATCGCCTATGCATGGCTTGGTAATGGGGTTATCTAAGACTATAATAATATCCGAAAAATAATGGTCCTACTAGCTACTAGCTGCCCAAGAACAGGCCGTTACAAAAACGTGTAAAAACTATTCCAGTTGGTCAGCACAAGCAGTGATAATAAATTCCCGGATTGTTTTCTTTTATTCGTNCTGCCATGGCCTCATGGGTACGACGAGCGAAAAAAA]
[+] EMBL AU095490 [TCCGCCGTCGCCATCGAGTANCCTCAACTAATGAANCGCCTCTGGCCCTTCAGCCTGATGCGTCCCGTCAAGGAGCTTAAATCGCCTATGCATGGCTTGGTAATGGGGTTATCTAAGACTATAATAATATCCGAAAAATAATGGTCCTACTAGCTACTAGCTGCCCAAGAACAGGCCGTTACAAAAACGTGTAAAAACTATTCCAGTTGGTCAGCACAAGCAGTGATAATAAATTCCCGGATTGTTTTCTTTTATTCGTNCTGCCATGGCCTCATGGGTACGACGAGCGAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9988#0 GCATGCGTNTGGGCACGATGTTCATGTCGCAATGCTGCTGGGAGCTGCTAAGCTGCTGCA 60
consensus_9988#1 ------------------------------------------------------------
consensus_9988#0 ATCACGCAGGGATCATTTCAATGGGAAGGTGAAGCTCGTGTTCCAGCCGGCGGAGGAGGG 120
consensus_9988#1 ------------------------------------------------------------
consensus_9988#0 GTACGCCGGCGGGTACTATGTGCTCGAGGAAGGCGCTGTGGACGATGTGCAGGGCATCTT 180
consensus_9988#1 ------------------------------------------------------------
consensus_9988#0 CGGCATGCACGTCGATGCGGGTTTGCCGGCGGGCGTAGTCGCGTCCAGGCCGGGGCCGTT 240
consensus_9988#1 ------------------------------------------------------------
consensus_9988#0 CCTCGCCGGCTCGGCTCGCTTCACGGCGACCATCAACGGTAAAGGCGGCCACGGGGCGGC 300
consensus_9988#1 ------------------------------------------------------------
consensus_9988#0 GCCCCACCACGACGTCGATCCGATCGTGGCTGTCTCTTCCGCCGTCCTCAGCCTCCAGCA 360
consensus_9988#1 ------------------------------------------------------------
consensus_9988#0 GATTGTTGCTCGCGAGACCGATCCCCTCCAAGGCGCGGTGGTGTCTGTGACCACCATCAA 420
consensus_9988#1 ------------------------------------------------------------
consensus_9988#0 AGGAGGTGAAGCTTTCAATGTCATTCCGGAATCTGTCACTCTGGGCGGCACCTTGAGGAG 480
consensus_9988#1 ------------------------------------------------------------
consensus_9988#0 CATGACAACCGATGGCATGTCTTACCTCATGAAGAGAATCAGAGAGGTGATAGAGGGGCA 540
consensus_9988#1 ------------------------------------------------------------
consensus_9988#0 AGCAGCCGTGAACCGGTGCACGGCGGCGGTGGACTTCATGGAGGATAAGCTCCCGCCATA 600
consensus_9988#1 ------------------------------------------------------------
consensus_9988#0 CCCAGCGACGGTGAACGACGAGGAGATGTACGCGCACGCCAAGGCGGTGGCGGAGAGCAT 660
consensus_9988#1 ------------------------------------------------------------
consensus_9988#0 GCTCGGGGAGGCCAACGTGAAGCTGTCCCCACAGGGCATGGGGGCGGAGGATTTCGGGTT 720
consensus_9988#1 ------------------------------------------------------------
consensus_9988#0 CTACGCGCAGAGGATCCCGGCCGCCTTCTTCGGCATAGGGGTCGGCAACGATGGCGGCGG 780
consensus_9988#1 ------------------------------------------------------------
consensus_9988#0 GATGGCGGAGACGACGACGAAGAATCAGCTGCACTCGCCGCACTTTGTCGTCGACGAGGA 840
consensus_9988#1 ------------------------------------------------------------
consensus_9988#0 AGCGCTCCCCGTCGGAGCCGCCTTCCACGCCGCCGTCGCCATCGAGTACC-TCAACAAG- 898
consensus_9988#1 ----------------------------TCCGCCGTCGCCATCGAGTANCCTCAACTAAT 32
******************* * ***** *
consensus_9988#0 --AACGCCTCTGGCCCTTCAGCCTGATGCGTCCCGTCAAGGAGCTTAAATCGCCTATGCA 956
consensus_9988#1 GAANCGCCTCTGGCCCTTCAGCCTGATGCGTCCCGTCAAGGAGCTTAAATCGCCTATGCA 92
* ********************************************************
consensus_9988#0 TGGCTTGGTAATGGGGTTATCTAAGACTATAATAATATCC-AAAAATAATGGTCCTACTA 1015
consensus_9988#1 TGGCTTGGTAATGGGGTTATCTAAGACTATAATAATATCCGAAAAATAATGGTCCTACTA 152
**************************************** *******************
consensus_9988#0 GCTACTAGCTGCCCAAGAACAGGCCGTTACAAAAACGTGTAAAAACTATTCCAGTTGGTC 1075
consensus_9988#1 GCTACTAGCTGCCCAAGAACAGGCCGTTACAAAAACGTGTAAAAACTATTCCAGTTGGTC 212
************************************************************
consensus_9988#0 AGCACAAGCAGTGATAATAAATTCCCGGATTGTTTTCTTTTAAAAAAA------------ 1123
consensus_9988#1 AGCACAAGCAGTGATAATAAATTCCCGGATTGTTTTCTTTTATTCGTNCTGCCATGGCCT 272
******************************************
consensus_9988#0 ---AAAAAAAAAAAAAAAAAAAAA 1144
consensus_9988#1 CATGGGTACGACGAGCGAAAAAAA 296
* * * *******
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||