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Oryza sativa
cluster # 9988 cluster # 9988       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9988#0 length = 1144 sequences # 6  
consensus_9988#1 length = 296 sequences # 1  

consensusID : consensus_9988#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1144
fasta sequence
                              [GCATGCGTNTGGGCACGATGTTCATGTCGCAATGCTGCTGGGAGCTGCTAAGCTGCTGCAATCACGCAGGGATCATTTCAATGGGAAGGTGAAGCTCGTGTTCCAGCCGGCGGAGGAGGGGTACGCCGGCGGGTACTATGTGCTCGAGGAAGGCGCTGTGGACGATGTGCAGGGCATCTTCGGCATGCACGTCGATGCGGGTTTGCCGGCGGGCGTAGTCGCGTCCAGGCCGGGGCCGTTCCTCGCCGGCTCGGCTCGCTTCACGGCGACCATCAACGGTAAAGGCGGCCACGGGGCGGCGCCCCACCACGACGTCGATCCGATCGTGGCTGTCTCTTCCGCCGTCCTCAGCCTCCAGCAGATTGTTGCTCGCGAGACCGATCCCCTCCAAGGCGCGGTGGTGTCTGTGACCACCATCAAAGGAGGTGAAGCTTTCAATGTCATTCCGGAATCTGTCACTCTGGGCGGCACCTTGAGGAGCATGACAACCGATGGCATGTCTTACCTCATGAAGAGAATCAGAGAGGTGATAGAGGGGCAAGCAGCCGTGAACCGGTGCACGGCGGCGGTGGACTTCATGGAGGATAAGCTCCCGCCATACCCAGCGACGGTGAACGACGAGGAGATGTACGCGCACGCCAAGGCGGTGGCGGAGAGCATGCTCGGGGAGGCCAACGTGAAGCTGTCCCCACAGGGCATGGGGGCGGAGGATTTCGGGTTCTACGCGCAGAGGATCCCGGCCGCCTTCTTCGGCATAGGGGTCGGCAACGATGGCGGCGGGATGGCGGAGACGACGACGAAGAAT-CAGCTGCACTCGCCGCACTTTGTCGTCGACGAGGAAGCGCTCCCCGTCGGAGCCGCCTTCCACGCCGCCGTCGCCATCGAGTACCTCAACAAGAACGCCTCTGGCCCTTCAGCCTGATGCGTCCCGTCAAGGAGCTTAAATCGCCTATGCATGGCTTGGTAATGGGGTTATCTAAGACTATAATAATATCCAAAAATAATGGTCCTACTAGCTACTAGCTGCCCAAGAACAGGCCGTTACAAAAACGTGTAAAAACTATTCCAGTTGGTCAGCACAAGCAGTGATAATAAATTCCCGGATTGTTTTCTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL OSR28431A            [GCATGCGTNTGGGCACGATGTTCATGTCGCAATGCTGCTGGGAGCTGCTAAGCTGCTGCAATCACGCAGGGATCATTTCAATGGGAAGGTGAAGCTCGTGTTCCAGCCGGCGGAGGAGGGGTACGCCGGCGGGTACTATGTGCTCGAGGAAGGCGCTGTGGACGATGTGCAGGGCATCTTCGGCATGCACGTCGATGCGGGTTTGCCGGCGGGCGTAGTCGCGTCCAGGCCGGGGCCGTTCCTCGCCGGCTCGGCTCGCTTCACGGCGACCATCAACGGTAAAGGCGGCCACGGGGCGGCGCCCCACCACGACGTCGATCCGATCGTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL OSS3095A             [    GCGTGTGGGCACGATGTTCATNTCGCAATGCTGCTGGGAGCTGCTAAG TGCTGCAATCACGCAGGGATCATTTCANTGGGAAGGTGAAGCTCGTGTTCCAGCCGGCGGAGGAGGGGTACGCCGGCGGGTACTATGTCCTCNAGGAAGGCGCTGTGGACGATGTGCAGGGCATCTNCGGCATNCACGTCGATNCGGGTTTCCCGGCGGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AK061197             [                                                                                                   GTTCCAGCCGGCGGAGGAGGGGTACGCCGGCGGGTACTATGTGCTCGAGGAAGGCGCTGTGGACGATGTGCAGGGCATCTTCGGCATGCACGTCGATGCGGGTTTGCCGGCGGGCGTAGTCGCGTCCAGGCCGGGGCCGTTCCTCGCCGGCTCGGCTCGCTTCACGGCGACCATCAACGGTAAAGGCGGCCACGCGGCGGCGCCCCACCACGCCGTCGATCCGATCGTGGCTGTCTCTTCCGCCGTCCTCAGCCTCCAGCAGATTGTTGCTCGCGAGACCGATCCCCTCCAAGGCGCGGTGGTGTCTGTGACCACCATCAAAGGAGGTGAAGCTTTCAATGTCATTCCGGAATCTGTCACTCTGGGCGGCACCTTGAGGAGCATGACAACCGATGGCATGTCTTACCTCATGAAGAGAATCAGAGAGGTGATAGAGGGGCAAGCAGCCGTGAACCGGTGCACGGCGGCGGTGGACTTCATGGAGGATAAGCTCCCGCCATACCCAGCGACGGTGAACGACGAGGAGATGTACGCGCACGCCAAGGCGGTGGCGGAGAGCATGCTCGGGGAGGCCAACGTGAAGCTGTCCCCACAGGGCATGGGGGCGGAGGATTTCGGGTTCTACGCGCAGAGGATCCCGGCCGCCTTCTTCGGCATAGGGGTCGGCAACGATGGCGGCGGGATGGCGGAGACGACGACGAAGAAT CAGCTGCACTCGCCGCACTTTGTCGTCGACGAGGAAGCGCTCCCCGTCGGAGCCGCCTTCCACGCCGCCGTCGCCATCGAGTACCTCAACAAGAACGCCTCTGGCCCTTCAGCCTGATGCGTCCCGTCAAGGAGCTTAAATCGCCTATGCATGGCTTGGTAATGGGGTTATCTAAGACTATAATAATATCCAAAAATAATGGTCCTACTAGCTACTAGCTGCCCAAGAACAGGCCGTTACAAAAACGTGTAAAAACTATTCCAGTTGGTCAGCACAAGCAGTGATAATAAATTCCCG                                          ]
[+] EMBL AU076301             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GGCATNGGGGCGNAGGATTTCGGGTTCTACGCGCAGAGGATCCCGGCCGCCTTCTTCGGCATAGGGGTCGGCAACGATGGCGGCGGGATGGCGGAGACGACGACGAAGAATCCAGCTGCACTCGCCGCACTTTGTCGTCGACGAGGAAGCGCTCCCCGTCGGAGCCGCCTTCCACGCCGCCGTCGCCATCGAGTACCTCAACAAGAACGCCTCTGGCCCTTCAGCCTGATGCGTCCCGTCAAGGAGCTTAAATCGCCTATGCATGGCTTGGTAATGGGGTTATCTAAGACTATAATAATATCCAAAAATAATGGTCCTACTAGCTACTAGCTGCCCAAGAACAGGCCGTTACAAAAACGTGTAAAAACTATTCCAGTTGGTCAGCACAAGCAGTGATAATAAATTCCCGGATTGTTTTCTTTTAAAAAA                      ]
[+] EMBL AU097087             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GGGCNGAGGATTTCGGGTTCTACGCGCAGAGGATCCCGGCCGCCTTNTTCGGCATAGGGGTCGGCAACGATGGCGGCGGGNTGGCGGAGACGACGACGAAGAAT CAGCTGCACTCGCCGCACTTTGTCGTCGACGAGGAAGCGCTCCCCGTCGGAGCCGCCTTCCACGCCGCCGTCGCCATCGAGTACCTCAACAAGAACGCCTCTGGCCCTTCAGCCTGATGCGTCCCGTCAAGGAGCTTAAATCGCCTATGCATGGCTTGGTAATGGGGTTATCTAAGACTATAATAATATCCAAAAATAATGGTCCTACTAGCTACTAGCTGCCCAAGAACAGGCCGTTACAAAAACGTGTAAAAACTATTCCAGTTGGTCAGCACAAGCAGTGATAATAAATTCCCGGATTGTTTTCTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU174211             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AAT CAGCTGCACTCGCCGCACTTTGTCGTCGACGAGGAAGCGCTCCCCGTCGGAGCCGCCTTCCACGCCGCCGTCGCCATCGAGTACCTCAACAAGAACGCCTCTGGCCCTTCAGCCTGATGCGTCCCGTCAAGGAGCTTAAATCGCCTATGCATGGCTTGGTAATGGGGTTATCTAAGACTATAATAATATCCAAAAATAATGGTCCTACTAGCTACTAGCTGCCCAAGAACAGGCCGTTACAAAAACGTGTAAAAACTATTCCAGTTGGTCAGCACAAGCAGTGATAATAAATTCCCGGATTGTTTTCTTTTAAAAAAA                     ]


>consensus_9988#0 GCATGCGTNTGGGCACGATGTTCATGTCGCAATGCTGCTGGGAGCTGCTAAGCTGCTGCA ATCACGCAGGGATCATTTCAATGGGAAGGTGAAGCTCGTGTTCCAGCCGGCGGAGGAGGG GTACGCCGGCGGGTACTATGTGCTCGAGGAAGGCGCTGTGGACGATGTGCAGGGCATCTT CGGCATGCACGTCGATGCGGGTTTGCCGGCGGGCGTAGTCGCGTCCAGGCCGGGGCCGTT CCTCGCCGGCTCGGCTCGCTTCACGGCGACCATCAACGGTAAAGGCGGCCACGGGGCGGC GCCCCACCACGACGTCGATCCGATCGTGGCTGTCTCTTCCGCCGTCCTCAGCCTCCAGCA GATTGTTGCTCGCGAGACCGATCCCCTCCAAGGCGCGGTGGTGTCTGTGACCACCATCAA AGGAGGTGAAGCTTTCAATGTCATTCCGGAATCTGTCACTCTGGGCGGCACCTTGAGGAG CATGACAACCGATGGCATGTCTTACCTCATGAAGAGAATCAGAGAGGTGATAGAGGGGCA AGCAGCCGTGAACCGGTGCACGGCGGCGGTGGACTTCATGGAGGATAAGCTCCCGCCATA CCCAGCGACGGTGAACGACGAGGAGATGTACGCGCACGCCAAGGCGGTGGCGGAGAGCAT GCTCGGGGAGGCCAACGTGAAGCTGTCCCCACAGGGCATGGGGGCGGAGGATTTCGGGTT CTACGCGCAGAGGATCCCGGCCGCCTTCTTCGGCATAGGGGTCGGCAACGATGGCGGCGG GATGGCGGAGACGACGACGAAGAATCAGCTGCACTCGCCGCACTTTGTCGTCGACGAGGA AGCGCTCCCCGTCGGAGCCGCCTTCCACGCCGCCGTCGCCATCGAGTACCTCAACAAGAA CGCCTCTGGCCCTTCAGCCTGATGCGTCCCGTCAAGGAGCTTAAATCGCCTATGCATGGC TTGGTAATGGGGTTATCTAAGACTATAATAATATCCAAAAATAATGGTCCTACTAGCTAC TAGCTGCCCAAGAACAGGCCGTTACAAAAACGTGTAAAAACTATTCCAGTTGGTCAGCAC AAGCAGTGATAATAAATTCCCGGATTGTTTTCTTTTAAAAAAAAAAAAAAAAAAAAAAAA AAAA



consensusID : consensus_9988#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 296
fasta sequence
                              [TCCGCCGTCGCCATCGAGTANCCTCAACTAATGAANCGCCTCTGGCCCTTCAGCCTGATGCGTCCCGTCAAGGAGCTTAAATCGCCTATGCATGGCTTGGTAATGGGGTTATCTAAGACTATAATAATATCCGAAAAATAATGGTCCTACTAGCTACTAGCTGCCCAAGAACAGGCCGTTACAAAAACGTGTAAAAACTATTCCAGTTGGTCAGCACAAGCAGTGATAATAAATTCCCGGATTGTTTTCTTTTATTCGTNCTGCCATGGCCTCATGGGTACGACGAGCGAAAAAAA]

[+] EMBL AU095490             [TCCGCCGTCGCCATCGAGTANCCTCAACTAATGAANCGCCTCTGGCCCTTCAGCCTGATGCGTCCCGTCAAGGAGCTTAAATCGCCTATGCATGGCTTGGTAATGGGGTTATCTAAGACTATAATAATATCCGAAAAATAATGGTCCTACTAGCTACTAGCTGCCCAAGAACAGGCCGTTACAAAAACGTGTAAAAACTATTCCAGTTGGTCAGCACAAGCAGTGATAATAAATTCCCGGATTGTTTTCTTTTATTCGTNCTGCCATGGCCTCATGGGTACGACGAGCGAAAAAAA]


>consensus_9988#1 TCCGCCGTCGCCATCGAGTANCCTCAACTAATGAANCGCCTCTGGCCCTTCAGCCTGATG CGTCCCGTCAAGGAGCTTAAATCGCCTATGCATGGCTTGGTAATGGGGTTATCTAAGACT ATAATAATATCCGAAAAATAATGGTCCTACTAGCTACTAGCTGCCCAAGAACAGGCCGTT ACAAAAACGTGTAAAAACTATTCCAGTTGGTCAGCACAAGCAGTGATAATAAATTCCCGG ATTGTTTTCTTTTATTCGTNCTGCCATGGCCTCATGGGTACGACGAGCGAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9988#0      GCATGCGTNTGGGCACGATGTTCATGTCGCAATGCTGCTGGGAGCTGCTAAGCTGCTGCA 60
consensus_9988#1      ------------------------------------------------------------
                                                                                  

consensus_9988#0      ATCACGCAGGGATCATTTCAATGGGAAGGTGAAGCTCGTGTTCCAGCCGGCGGAGGAGGG 120
consensus_9988#1      ------------------------------------------------------------
                                                                                  

consensus_9988#0      GTACGCCGGCGGGTACTATGTGCTCGAGGAAGGCGCTGTGGACGATGTGCAGGGCATCTT 180
consensus_9988#1      ------------------------------------------------------------
                                                                                  

consensus_9988#0      CGGCATGCACGTCGATGCGGGTTTGCCGGCGGGCGTAGTCGCGTCCAGGCCGGGGCCGTT 240
consensus_9988#1      ------------------------------------------------------------
                                                                                  

consensus_9988#0      CCTCGCCGGCTCGGCTCGCTTCACGGCGACCATCAACGGTAAAGGCGGCCACGGGGCGGC 300
consensus_9988#1      ------------------------------------------------------------
                                                                                  

consensus_9988#0      GCCCCACCACGACGTCGATCCGATCGTGGCTGTCTCTTCCGCCGTCCTCAGCCTCCAGCA 360
consensus_9988#1      ------------------------------------------------------------
                                                                                  

consensus_9988#0      GATTGTTGCTCGCGAGACCGATCCCCTCCAAGGCGCGGTGGTGTCTGTGACCACCATCAA 420
consensus_9988#1      ------------------------------------------------------------
                                                                                  

consensus_9988#0      AGGAGGTGAAGCTTTCAATGTCATTCCGGAATCTGTCACTCTGGGCGGCACCTTGAGGAG 480
consensus_9988#1      ------------------------------------------------------------
                                                                                  

consensus_9988#0      CATGACAACCGATGGCATGTCTTACCTCATGAAGAGAATCAGAGAGGTGATAGAGGGGCA 540
consensus_9988#1      ------------------------------------------------------------
                                                                                  

consensus_9988#0      AGCAGCCGTGAACCGGTGCACGGCGGCGGTGGACTTCATGGAGGATAAGCTCCCGCCATA 600
consensus_9988#1      ------------------------------------------------------------
                                                                                  

consensus_9988#0      CCCAGCGACGGTGAACGACGAGGAGATGTACGCGCACGCCAAGGCGGTGGCGGAGAGCAT 660
consensus_9988#1      ------------------------------------------------------------
                                                                                  

consensus_9988#0      GCTCGGGGAGGCCAACGTGAAGCTGTCCCCACAGGGCATGGGGGCGGAGGATTTCGGGTT 720
consensus_9988#1      ------------------------------------------------------------
                                                                                  

consensus_9988#0      CTACGCGCAGAGGATCCCGGCCGCCTTCTTCGGCATAGGGGTCGGCAACGATGGCGGCGG 780
consensus_9988#1      ------------------------------------------------------------
                                                                                  

consensus_9988#0      GATGGCGGAGACGACGACGAAGAATCAGCTGCACTCGCCGCACTTTGTCGTCGACGAGGA 840
consensus_9988#1      ------------------------------------------------------------
                                                                                  

consensus_9988#0      AGCGCTCCCCGTCGGAGCCGCCTTCCACGCCGCCGTCGCCATCGAGTACC-TCAACAAG- 898
consensus_9988#1      ----------------------------TCCGCCGTCGCCATCGAGTANCCTCAACTAAT 32
                                                   ******************* * ***** *  

consensus_9988#0      --AACGCCTCTGGCCCTTCAGCCTGATGCGTCCCGTCAAGGAGCTTAAATCGCCTATGCA 956
consensus_9988#1      GAANCGCCTCTGGCCCTTCAGCCTGATGCGTCCCGTCAAGGAGCTTAAATCGCCTATGCA 92
                        * ********************************************************

consensus_9988#0      TGGCTTGGTAATGGGGTTATCTAAGACTATAATAATATCC-AAAAATAATGGTCCTACTA 1015
consensus_9988#1      TGGCTTGGTAATGGGGTTATCTAAGACTATAATAATATCCGAAAAATAATGGTCCTACTA 152
                      **************************************** *******************

consensus_9988#0      GCTACTAGCTGCCCAAGAACAGGCCGTTACAAAAACGTGTAAAAACTATTCCAGTTGGTC 1075
consensus_9988#1      GCTACTAGCTGCCCAAGAACAGGCCGTTACAAAAACGTGTAAAAACTATTCCAGTTGGTC 212
                      ************************************************************

consensus_9988#0      AGCACAAGCAGTGATAATAAATTCCCGGATTGTTTTCTTTTAAAAAAA------------ 1123
consensus_9988#1      AGCACAAGCAGTGATAATAAATTCCCGGATTGTTTTCTTTTATTCGTNCTGCCATGGCCT 272
                      ******************************************                  

consensus_9988#0      ---AAAAAAAAAAAAAAAAAAAAA 1144
consensus_9988#1      CATGGGTACGACGAGCGAAAAAAA 296
                             *  *  *   *******




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)