These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9988#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1144 fasta sequence [GCATGCGTNTGGGCACGATGTTCATGTCGCAATGCTGCTGGGAGCTGCTAAGCTGCTGCAATCACGCAGGGATCATTTCAATGGGAAGGTGAAGCTCGTGTTCCAGCCGGCGGAGGAGGGGTACGCCGGCGGGTACTATGTGCTCGAGGAAGGCGCTGTGGACGATGTGCAGGGCATCTTCGGCATGCACGTCGATGCGGGTTTGCCGGCGGGCGTAGTCGCGTCCAGGCCGGGGCCGTTCCTCGCCGGCTCGGCTCGCTTCACGGCGACCATCAACGGTAAAGGCGGCCACGGGGCGGCGCCCCACCACGACGTCGATCCGATCGTGGCTGTCTCTTCCGCCGTCCTCAGCCTCCAGCAGATTGTTGCTCGCGAGACCGATCCCCTCCAAGGCGCGGTGGTGTCTGTGACCACCATCAAAGGAGGTGAAGCTTTCAATGTCATTCCGGAATCTGTCACTCTGGGCGGCACCTTGAGGAGCATGACAACCGATGGCATGTCTTACCTCATGAAGAGAATCAGAGAGGTGATAGAGGGGCAAGCAGCCGTGAACCGGTGCACGGCGGCGGTGGACTTCATGGAGGATAAGCTCCCGCCATACCCAGCGACGGTGAACGACGAGGAGATGTACGCGCACGCCAAGGCGGTGGCGGAGAGCATGCTCGGGGAGGCCAACGTGAAGCTGTCCCCACAGGGCATGGGGGCGGAGGATTTCGGGTTCTACGCGCAGAGGATCCCGGCCGCCTTCTTCGGCATAGGGGTCGGCAACGATGGCGGCGGGATGGCGGAGACGACGACGAAGAAT-CAGCTGCACTCGCCGCACTTTGTCGTCGACGAGGAAGCGCTCCCCGTCGGAGCCGCCTTCCACGCCGCCGTCGCCATCGAGTACCTCAACAAGAACGCCTCTGGCCCTTCAGCCTGATGCGTCCCGTCAAGGAGCTTAAATCGCCTATGCATGGCTTGGTAATGGGGTTATCTAAGACTATAATAATATCCAAAAATAATGGTCCTACTAGCTACTAGCTGCCCAAGAACAGGCCGTTACAAAAACGTGTAAAAACTATTCCAGTTGGTCAGCACAAGCAGTGATAATAAATTCCCGGATTGTTTTCTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL OSR28431A [GCATGCGTNTGGGCACGATGTTCATGTCGCAATGCTGCTGGGAGCTGCTAAGCTGCTGCAATCACGCAGGGATCATTTCAATGGGAAGGTGAAGCTCGTGTTCCAGCCGGCGGAGGAGGGGTACGCCGGCGGGTACTATGTGCTCGAGGAAGGCGCTGTGGACGATGTGCAGGGCATCTTCGGCATGCACGTCGATGCGGGTTTGCCGGCGGGCGTAGTCGCGTCCAGGCCGGGGCCGTTCCTCGCCGGCTCGGCTCGCTTCACGGCGACCATCAACGGTAAAGGCGGCCACGGGGCGGCGCCCCACCACGACGTCGATCCGATCGTGG ] [+] EMBL OSS3095A [ GCGTGTGGGCACGATGTTCATNTCGCAATGCTGCTGGGAGCTGCTAAG TGCTGCAATCACGCAGGGATCATTTCANTGGGAAGGTGAAGCTCGTGTTCCAGCCGGCGGAGGAGGGGTACGCCGGCGGGTACTATGTCCTCNAGGAAGGCGCTGTGGACGATGTGCAGGGCATCTNCGGCATNCACGTCGATNCGGGTTTCCCGGCGGGC ] [+] EMBL AK061197 [ GTTCCAGCCGGCGGAGGAGGGGTACGCCGGCGGGTACTATGTGCTCGAGGAAGGCGCTGTGGACGATGTGCAGGGCATCTTCGGCATGCACGTCGATGCGGGTTTGCCGGCGGGCGTAGTCGCGTCCAGGCCGGGGCCGTTCCTCGCCGGCTCGGCTCGCTTCACGGCGACCATCAACGGTAAAGGCGGCCACGCGGCGGCGCCCCACCACGCCGTCGATCCGATCGTGGCTGTCTCTTCCGCCGTCCTCAGCCTCCAGCAGATTGTTGCTCGCGAGACCGATCCCCTCCAAGGCGCGGTGGTGTCTGTGACCACCATCAAAGGAGGTGAAGCTTTCAATGTCATTCCGGAATCTGTCACTCTGGGCGGCACCTTGAGGAGCATGACAACCGATGGCATGTCTTACCTCATGAAGAGAATCAGAGAGGTGATAGAGGGGCAAGCAGCCGTGAACCGGTGCACGGCGGCGGTGGACTTCATGGAGGATAAGCTCCCGCCATACCCAGCGACGGTGAACGACGAGGAGATGTACGCGCACGCCAAGGCGGTGGCGGAGAGCATGCTCGGGGAGGCCAACGTGAAGCTGTCCCCACAGGGCATGGGGGCGGAGGATTTCGGGTTCTACGCGCAGAGGATCCCGGCCGCCTTCTTCGGCATAGGGGTCGGCAACGATGGCGGCGGGATGGCGGAGACGACGACGAAGAAT CAGCTGCACTCGCCGCACTTTGTCGTCGACGAGGAAGCGCTCCCCGTCGGAGCCGCCTTCCACGCCGCCGTCGCCATCGAGTACCTCAACAAGAACGCCTCTGGCCCTTCAGCCTGATGCGTCCCGTCAAGGAGCTTAAATCGCCTATGCATGGCTTGGTAATGGGGTTATCTAAGACTATAATAATATCCAAAAATAATGGTCCTACTAGCTACTAGCTGCCCAAGAACAGGCCGTTACAAAAACGTGTAAAAACTATTCCAGTTGGTCAGCACAAGCAGTGATAATAAATTCCCG ] [+] EMBL AU076301 [ GGCATNGGGGCGNAGGATTTCGGGTTCTACGCGCAGAGGATCCCGGCCGCCTTCTTCGGCATAGGGGTCGGCAACGATGGCGGCGGGATGGCGGAGACGACGACGAAGAATCCAGCTGCACTCGCCGCACTTTGTCGTCGACGAGGAAGCGCTCCCCGTCGGAGCCGCCTTCCACGCCGCCGTCGCCATCGAGTACCTCAACAAGAACGCCTCTGGCCCTTCAGCCTGATGCGTCCCGTCAAGGAGCTTAAATCGCCTATGCATGGCTTGGTAATGGGGTTATCTAAGACTATAATAATATCCAAAAATAATGGTCCTACTAGCTACTAGCTGCCCAAGAACAGGCCGTTACAAAAACGTGTAAAAACTATTCCAGTTGGTCAGCACAAGCAGTGATAATAAATTCCCGGATTGTTTTCTTTTAAAAAA ] [+] EMBL AU097087 [ GGGCNGAGGATTTCGGGTTCTACGCGCAGAGGATCCCGGCCGCCTTNTTCGGCATAGGGGTCGGCAACGATGGCGGCGGGNTGGCGGAGACGACGACGAAGAAT CAGCTGCACTCGCCGCACTTTGTCGTCGACGAGGAAGCGCTCCCCGTCGGAGCCGCCTTCCACGCCGCCGTCGCCATCGAGTACCTCAACAAGAACGCCTCTGGCCCTTCAGCCTGATGCGTCCCGTCAAGGAGCTTAAATCGCCTATGCATGGCTTGGTAATGGGGTTATCTAAGACTATAATAATATCCAAAAATAATGGTCCTACTAGCTACTAGCTGCCCAAGAACAGGCCGTTACAAAAACGTGTAAAAACTATTCCAGTTGGTCAGCACAAGCAGTGATAATAAATTCCCGGATTGTTTTCTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU174211 [ AAT CAGCTGCACTCGCCGCACTTTGTCGTCGACGAGGAAGCGCTCCCCGTCGGAGCCGCCTTCCACGCCGCCGTCGCCATCGAGTACCTCAACAAGAACGCCTCTGGCCCTTCAGCCTGATGCGTCCCGTCAAGGAGCTTAAATCGCCTATGCATGGCTTGGTAATGGGGTTATCTAAGACTATAATAATATCCAAAAATAATGGTCCTACTAGCTACTAGCTGCCCAAGAACAGGCCGTTACAAAAACGTGTAAAAACTATTCCAGTTGGTCAGCACAAGCAGTGATAATAAATTCCCGGATTGTTTTCTTTTAAAAAAA ] consensusID : consensus_9988#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 296 fasta sequence [TCCGCCGTCGCCATCGAGTANCCTCAACTAATGAANCGCCTCTGGCCCTTCAGCCTGATGCGTCCCGTCAAGGAGCTTAAATCGCCTATGCATGGCTTGGTAATGGGGTTATCTAAGACTATAATAATATCCGAAAAATAATGGTCCTACTAGCTACTAGCTGCCCAAGAACAGGCCGTTACAAAAACGTGTAAAAACTATTCCAGTTGGTCAGCACAAGCAGTGATAATAAATTCCCGGATTGTTTTCTTTTATTCGTNCTGCCATGGCCTCATGGGTACGACGAGCGAAAAAAA] [+] EMBL AU095490 [TCCGCCGTCGCCATCGAGTANCCTCAACTAATGAANCGCCTCTGGCCCTTCAGCCTGATGCGTCCCGTCAAGGAGCTTAAATCGCCTATGCATGGCTTGGTAATGGGGTTATCTAAGACTATAATAATATCCGAAAAATAATGGTCCTACTAGCTACTAGCTGCCCAAGAACAGGCCGTTACAAAAACGTGTAAAAACTATTCCAGTTGGTCAGCACAAGCAGTGATAATAAATTCCCGGATTGTTTTCTTTTATTCGTNCTGCCATGGCCTCATGGGTACGACGAGCGAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9988#0 GCATGCGTNTGGGCACGATGTTCATGTCGCAATGCTGCTGGGAGCTGCTAAGCTGCTGCA 60 consensus_9988#1 ------------------------------------------------------------ consensus_9988#0 ATCACGCAGGGATCATTTCAATGGGAAGGTGAAGCTCGTGTTCCAGCCGGCGGAGGAGGG 120 consensus_9988#1 ------------------------------------------------------------ consensus_9988#0 GTACGCCGGCGGGTACTATGTGCTCGAGGAAGGCGCTGTGGACGATGTGCAGGGCATCTT 180 consensus_9988#1 ------------------------------------------------------------ consensus_9988#0 CGGCATGCACGTCGATGCGGGTTTGCCGGCGGGCGTAGTCGCGTCCAGGCCGGGGCCGTT 240 consensus_9988#1 ------------------------------------------------------------ consensus_9988#0 CCTCGCCGGCTCGGCTCGCTTCACGGCGACCATCAACGGTAAAGGCGGCCACGGGGCGGC 300 consensus_9988#1 ------------------------------------------------------------ consensus_9988#0 GCCCCACCACGACGTCGATCCGATCGTGGCTGTCTCTTCCGCCGTCCTCAGCCTCCAGCA 360 consensus_9988#1 ------------------------------------------------------------ consensus_9988#0 GATTGTTGCTCGCGAGACCGATCCCCTCCAAGGCGCGGTGGTGTCTGTGACCACCATCAA 420 consensus_9988#1 ------------------------------------------------------------ consensus_9988#0 AGGAGGTGAAGCTTTCAATGTCATTCCGGAATCTGTCACTCTGGGCGGCACCTTGAGGAG 480 consensus_9988#1 ------------------------------------------------------------ consensus_9988#0 CATGACAACCGATGGCATGTCTTACCTCATGAAGAGAATCAGAGAGGTGATAGAGGGGCA 540 consensus_9988#1 ------------------------------------------------------------ consensus_9988#0 AGCAGCCGTGAACCGGTGCACGGCGGCGGTGGACTTCATGGAGGATAAGCTCCCGCCATA 600 consensus_9988#1 ------------------------------------------------------------ consensus_9988#0 CCCAGCGACGGTGAACGACGAGGAGATGTACGCGCACGCCAAGGCGGTGGCGGAGAGCAT 660 consensus_9988#1 ------------------------------------------------------------ consensus_9988#0 GCTCGGGGAGGCCAACGTGAAGCTGTCCCCACAGGGCATGGGGGCGGAGGATTTCGGGTT 720 consensus_9988#1 ------------------------------------------------------------ consensus_9988#0 CTACGCGCAGAGGATCCCGGCCGCCTTCTTCGGCATAGGGGTCGGCAACGATGGCGGCGG 780 consensus_9988#1 ------------------------------------------------------------ consensus_9988#0 GATGGCGGAGACGACGACGAAGAATCAGCTGCACTCGCCGCACTTTGTCGTCGACGAGGA 840 consensus_9988#1 ------------------------------------------------------------ consensus_9988#0 AGCGCTCCCCGTCGGAGCCGCCTTCCACGCCGCCGTCGCCATCGAGTACC-TCAACAAG- 898 consensus_9988#1 ----------------------------TCCGCCGTCGCCATCGAGTANCCTCAACTAAT 32 ******************* * ***** * consensus_9988#0 --AACGCCTCTGGCCCTTCAGCCTGATGCGTCCCGTCAAGGAGCTTAAATCGCCTATGCA 956 consensus_9988#1 GAANCGCCTCTGGCCCTTCAGCCTGATGCGTCCCGTCAAGGAGCTTAAATCGCCTATGCA 92 * ******************************************************** consensus_9988#0 TGGCTTGGTAATGGGGTTATCTAAGACTATAATAATATCC-AAAAATAATGGTCCTACTA 1015 consensus_9988#1 TGGCTTGGTAATGGGGTTATCTAAGACTATAATAATATCCGAAAAATAATGGTCCTACTA 152 **************************************** ******************* consensus_9988#0 GCTACTAGCTGCCCAAGAACAGGCCGTTACAAAAACGTGTAAAAACTATTCCAGTTGGTC 1075 consensus_9988#1 GCTACTAGCTGCCCAAGAACAGGCCGTTACAAAAACGTGTAAAAACTATTCCAGTTGGTC 212 ************************************************************ consensus_9988#0 AGCACAAGCAGTGATAATAAATTCCCGGATTGTTTTCTTTTAAAAAAA------------ 1123 consensus_9988#1 AGCACAAGCAGTGATAATAAATTCCCGGATTGTTTTCTTTTATTCGTNCTGCCATGGCCT 272 ****************************************** consensus_9988#0 ---AAAAAAAAAAAAAAAAAAAAA 1144 consensus_9988#1 CATGGGTACGACGAGCGAAAAAAA 296 * * * ******* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||