cluster # 9989

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9989 cluster # 9989 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9989#0 length = 672 sequences # 6

consensus_9989#1 length = 347 sequences # 1

consensusID : consensus_9989#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 672
fasta sequence

                              [AAAATTTACACCTCAGGCTTTCTTCCATTACCAGTTCGCAAGTACATACGCAAACAATGTTCCCTTCCGCAACCAAACGAAACCTCATGGTATATTTGAGATTAATTCGGTATAAAATGAATGTCCATTCGTTCTCAGCGAGCTAAAATTCCTCAGCCCAAATGCATACAGAACTTGAGGACCGATGGCAAAGGCACCAACAAGTAGTAAAAGAAAAAAAAAGCCTACAATGAGAATGCCGGGTGCTTCCTTCTTTCCAGGAGCAGGGGACTTCAAAAACAAACACCGAGCTCTTCCTTTCCTAGCTGCAAATTAGTGTCCGGGACAAGGACTGGAAGCTGGATCAACTTTACTACAGGCCGGATGACCAGTAGCCAATGCTCTTGTACCCTCTTAAAATCTGAAATCCGGGTCGACGTCCATTGCCCACGAAAATTTCGCAATGAGTGATTTGTTGAAAATCTTCTCGATGGGTACTTCATGGCGTTTGCACCATGCAACAGTAATTCTGGGATCAAGGTAATTGATCTTTGAAGTTCCTAGTGCCACTGTCTTTAAATCCTCTTTAATCTTCTTATCCATCTCCATCTTCTCTATCTTGGTTTCAATCTGAGATATCTTCTTTTCAAACGCTTCAGGGGCCAAATTTCTTTTTGGTTTCCCATCTTTGTC]

[+] EMBL CB632539             [AAAATTTACACCTCAGGCTTTCTTCCATTACCAGTTCGCAAGTACATACGCAAACAATGTTCCCTTCCGCAACCAAACGAAACCTCATGGCCTATTTGAGATTAATTCGGTATAAAATGAATGTCCATTCGTTCTCAGCGAGCTAAAATTCCTCAGCCCAAATGCATACAGAACTTGAGGACCGATGGCAAAGGCACCAACAAGTAGTAAAAGAAAAAAAAAGCCTACAATGAGAATGCCGGGTGCTTCCTTCTTTCCAGGAGCAGGGGACTTCAAAAACAAACACCGAGCTCTTCCTTTCCTAGCTGCAAATTAGTGTCCGGGACAAGGACTGGAAGCTGGATCAACTTTACTACAGGCCGGATGACCAGTAGCCAATGCTCTTATACCCTCTTAAAATCTGAAATCTGGGTCGACGTCCATTGCCCACGAAAATTTCGCAATGAGTGATTTGTTGAAAATCTTCTCGATGGGTACTTCATGGCGTTTGCACCATGCAACAGTAATTCTGGGATCAAGGGAATTGATCTTTGAAGTTCCTAGTGCCACTGTCTTTAAATCCTCTTTAATCTTCTTATCCATCTCCATCTTCTCTATCTTGGTTTCAATCTGAGATATCTTCTTTTCAAACGCTTCAGGGGCCAAATTTCTTTTTGGTTTCCCATCTTTGTC]
[+] EMBL CB662494             [                                AGTTCCCTTGTACATACCCAAACAATGTTCCCTTCCGCAACCAAACGAAACCTCATGGTATATTTGAGATTAATTCCGTATAAAATGAATGTCCATTCGTTCTCAGCGAGCTAAAATTCCTCAGCCCAAATGCATACAGAACTTGAGGACCGATGGCAAAGGCACCAACAAGTAGTAAAAGAAAAAAAAAGCCTACAATGAGAATGCCGGGTGCTTCCTTCTTTCCAGGAGCAGGGGACTTCAAAAACAAACACCGAGCTCTTCCTTTCCTAGCTGCAAATTAGTGTCCGGGACAAGGACTGGAAGCTGGATCAACTTTACTACAGGCCGGATGACCAGTAGCCAATGCTCTTGTACCCTCTTAAAATCTGAAATCCGGGTCGACGTCCATTGCCCACGAAAATTTCGCAATGAGTGATTTGTTGAAAATCTTCTCGATGGGTACTTCATGGCGTTTGCACCATGCAACAGTAATTCTGGGATCAAGGTAATTGATCTTTGAAGTTCCTAGTGCCACTGTCTTTAAATCCTCTTTAATCTTCTTATCCATCTCCATCTTCTCTATCTTGGTTTCAATCTGAGATATCTTCTTTTCAAACGCTTCAGGGGCCAAATTTCTTTTTGGTTTCCCATCTTTGTC]
[+] EMBL CB677760             [                                                                   CGCAACCAAACGAAACCTCATGGTATATTTGAGCTTAATTCGGTATAAAATGAATGTCCATTCGTTCTCAGCGAGCTAAAATTCCTCAGCCCAAATGCATACAGAACTTGAGGACCGATGGCAAAGGCACCAACAAGTAGTAAAAGAAAAAAAAAGCCTACAATGAGAATGCCGGGTGCTTCCTTCTTTCCAGGAGCAGGGGACTTCAAAAACAAACACCGAGCTCTTCCTTTCCTAGCTGCAAATTAGTGTCCGGGACAAGGACTGGAAGCTGGATCAACTTTACTACAGGCCGGATGACCAGTAGCCAATGCTCTTGTACCCTCTTAAAATCTGAAATCCGGGTCGACGTCCATTGCCCACGAAAATTTCGCAATGAGTGATTTGTTGAAAATCTTCTCGATGGGTACTTCATGGCGTTTGCACCATGCAACAGTAATTCTGGGATCAAGGTAATTGATCTTTGAAGTTCCTAGTGCCACTGTCTTTAAATCCTCTTTAATCTTCTTATCCATCTCCATCTTCTCTATCTTGGTTTCAATCTGAGATATCTTCTTTTCAAACGCTTCAGGGGCCAAATTTCTTTTTGGTTTCCCATCTTTGTC]
[+] EMBL CB677729             [                                                                    GCAACCAAACGAAACCTCATGGTATATTTGACCTTAATTCGGTATAAAATGAATGTCCATTCGTTCTCAGCGAGCTAAAATTCCTCAGCCCAAATGCATACAGAACTTGAGGACCGATGGCAAAGGCACCAACAAGTAGTAAAAGAAAAAAAAAGCCTACAATGAGAATGCCGGGTGCTTCCTTCTTTCCAGGAGCAGGGGACTTCAAAAACAAACACCGAGCTCTTCCTTTCCTAGCTGCAAATTAGTGTCCGGGACAAGGACTGGAAGCTGGATCAACTTTACTACAGGCCGGATGACCAGTAGCCAATGCTCTTGTACCCTCTTAAAATCTGAAATCCGGGTCGACGTCCATTGCCCACGAAAATTTCGCAATGAGTGATTTGTTGAAAATCTTCTCGATGGGTACTTCATGGCGTTTGCACCATGCAACAGTAATTCTGGGATCAAGGTAATTGATCTTTGAAGTTCCTAGTGCCACTGTCTTTAAATCCTCTTTAATCTTCTTATCCATCTCCATCTTCTCTATCTTGGTTTCAATCTGAGATATCTTCTTTTCAAACGCTTCAGGGGCCAAATTTCTTTTTGGTTTCCCATCTTTGTC]
[+] EMBL CB664087             [                                                                                                          TCGGTATAAAATGAATGTCCATTCGTTCTCAGCGAGCTAAAATTCCTCAGCCCAAATGCATACAGAACTTGAGGACCGATGGCAAAGGCACCAACAAGTAGTAAAAGAAAAAAAAAGCCTACAATGAGAATGCCGGGTGCTTCCTTCTTTCCAGGAGCAGGGGACTTCAAAAACAAACACCGAGCTCTTCCTTTCCTAGCTGCAAATTAGTGTCCGGGACAAGGACTGGAAGCTGGATCAACTTTACTACAGGCCGGATGACCAGTAGCCAATGCTCTTGTACCCTCTTAAAATCTGAAATCCGGGTCGACGTCCATTGCCCACGAAAATTTCGCAATGAGTGATTTGTTGAAAATCTTCTCGATGGGTACTTCATGGCGTTTGCACCATGCAACAGTAATTCTGGGATCAAGGTAATTGATCTTTGAAGTTCCTAGTGCCACTGTCTTTAAATCCTCTTTAATCTTCTTATCCATCTCCATCTTCTCTATCTTGGTTTCAATCTGAGATATCTTCTTTTCAAACGCTTCAGGGGCCAAATTTCTTTTTGGTTTCCCATCTTTGTC]
[-] EMBL AA750562             [                                                                                                                                                                                                                                                                                                                                        GGACTGGAAGCTGGATCAACTTTACTACAGGCCGGATGACCAGTAGCCAATGCTCTTATACCCTCTTAAAATCTGAAATCTGGGTCGACGTCCATTGCCCACGAAAATTTCGCAATGAGTGATTTGTTGAAAATCTTCTCGATGGGTACTTCATGGCGTTTGCACCATGCAACAGTAATTCTGGGATCAAGGTAATTGATCTTTGAAGTTCCTAGTGCCACTGT                                                                                                                        ]




>consensus_9989#0
AAAATTTACACCTCAGGCTTTCTTCCATTACCAGTTCGCAAGTACATACGCAAACAATGT
TCCCTTCCGCAACCAAACGAAACCTCATGGTATATTTGAGATTAATTCGGTATAAAATGA
ATGTCCATTCGTTCTCAGCGAGCTAAAATTCCTCAGCCCAAATGCATACAGAACTTGAGG
ACCGATGGCAAAGGCACCAACAAGTAGTAAAAGAAAAAAAAAGCCTACAATGAGAATGCC
GGGTGCTTCCTTCTTTCCAGGAGCAGGGGACTTCAAAAACAAACACCGAGCTCTTCCTTT
CCTAGCTGCAAATTAGTGTCCGGGACAAGGACTGGAAGCTGGATCAACTTTACTACAGGC
CGGATGACCAGTAGCCAATGCTCTTGTACCCTCTTAAAATCTGAAATCCGGGTCGACGTC
CATTGCCCACGAAAATTTCGCAATGAGTGATTTGTTGAAAATCTTCTCGATGGGTACTTC
ATGGCGTTTGCACCATGCAACAGTAATTCTGGGATCAAGGTAATTGATCTTTGAAGTTCC
TAGTGCCACTGTCTTTAAATCCTCTTTAATCTTCTTATCCATCTCCATCTTCTCTATCTT
GGTTTCAATCTGAGATATCTTCTTTTCAAACGCTTCAGGGGCCAAATTTCTTTTTGGTTT
CCCATCTTTGTC

consensusID : consensus_9989#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 347
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGCAACCAAACGAAACCTCATGGTATATTTGAGATTAATTCGGTATAAAATGAATGTCCATTCGTTCTCAGCGAGCTAAAATTCCTCAGCCCAAATGCATACAGAACTTGAGGACCGATGGCAAAGGCACCAACAAGTAGTAAAAGAAAAAAAAAAAAAGCCTACAATGAGAATGCCGGGTGCTTCCTTCTTTCCAGGAGCAGGGGACTTCAAAAACAAACACCGAGCTCTTCCTTTCCTAGCTGCAAATTAGTGTCCGGGACAAGGACTGGAAGCTGGATCAACTTTACCACAGGC]

[-] EMBL CA757670             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGCAACCAAACGAAACCTCATGGTATATTTGAGATTAATTCGGTATAAAATGAATGTCCATTCGTTCTCAGCGAGCTAAAATTCCTCAGCCCAAATGCATACAGAACTTGAGGACCGATGGCAAAGGCACCAACAAGTAGTAAAAGAAAAAAAAAAAAAGCCTACAATGAGAATGCCGGGTGCTTCCTTCTTTCCAGGAGCAGGGGACTTCAAAAACAAACACCGAGCTCTTCCTTTCCTAGCTGCAAATTAGTGTCCGGGACAAGGACTGGAAGCTGGATCAACTTTACCACAGGC]




>consensus_9989#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGCAACCAAA
CGAAACCTCATGGTATATTTGAGATTAATTCGGTATAAAATGAATGTCCATTCGTTCTCA
GCGAGCTAAAATTCCTCAGCCCAAATGCATACAGAACTTGAGGACCGATGGCAAAGGCAC
CAACAAGTAGTAAAAGAAAAAAAAAAAAAGCCTACAATGAGAATGCCGGGTGCTTCCTTC
TTTCCAGGAGCAGGGGACTTCAAAAACAAACACCGAGCTCTTCCTTTCCTAGCTGCAAAT
TAGTGTCCGGGACAAGGACTGGAAGCTGGATCAACTTTACCACAGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9989#0      AAAATTTACACCTCAGGCTTTCTTCCATTACCAGTTCGCAAGTACATACGCAAACAATGT 60
consensus_9989#1      -----------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 43
                                        *** **   **     **      *   *          * *

consensus_9989#0      TCCCTTCCGCAACCAAACGAAACCTCATGGTATATTTGAGATTAATTCGGTATAAAATGA 120
consensus_9989#1      TTTTTTCCGCAACCAAACGAAACCTCATGGTATATTTGAGATTAATTCGGTATAAAATGA 103
                      *   ********************************************************

consensus_9989#0      ATGTCCATTCGTTCTCAGCGAGCTAAAATTCCTCAGCCCAAATGCATACAGAACTTGAGG 180
consensus_9989#1      ATGTCCATTCGTTCTCAGCGAGCTAAAATTCCTCAGCCCAAATGCATACAGAACTTGAGG 163
                      ************************************************************

consensus_9989#0      ACCGATGGCAAAGGCACCAACAAGTAGTAAAAGAAAAAAAAA----GCCTACAATGAGAA 236
consensus_9989#1      ACCGATGGCAAAGGCACCAACAAGTAGTAAAAGAAAAAAAAAAAAAGCCTACAATGAGAA 223
                      ******************************************    **************

consensus_9989#0      TGCCGGGTGCTTCCTTCTTTCCAGGAGCAGGGGACTTCAAAAACAAACACCGAGCTCTTC 296
consensus_9989#1      TGCCGGGTGCTTCCTTCTTTCCAGGAGCAGGGGACTTCAAAAACAAACACCGAGCTCTTC 283
                      ************************************************************

consensus_9989#0      CTTTCCTAGCTGCAAATTAGTGTCCGGGACAAGGACTGGAAGCTGGATCAACTTTACTAC 356
consensus_9989#1      CTTTCCTAGCTGCAAATTAGTGTCCGGGACAAGGACTGGAAGCTGGATCAACTTTACCAC 343
                      ********************************************************* **

consensus_9989#0      AGGCCGGATGACCAGTAGCCAATGCTCTTGTACCCTCTTAAAATCTGAAATCCGGGTCGA 416
consensus_9989#1      AGGC-------------------------------------------------------- 347
                      ****                                                        

consensus_9989#0      CGTCCATTGCCCACGAAAATTTCGCAATGAGTGATTTGTTGAAAATCTTCTCGATGGGTA 476
consensus_9989#1      ------------------------------------------------------------
                                                                                  

consensus_9989#0      CTTCATGGCGTTTGCACCATGCAACAGTAATTCTGGGATCAAGGTAATTGATCTTTGAAG 536
consensus_9989#1      ------------------------------------------------------------
                                                                                  

consensus_9989#0      TTCCTAGTGCCACTGTCTTTAAATCCTCTTTAATCTTCTTATCCATCTCCATCTTCTCTA 596
consensus_9989#1      ------------------------------------------------------------
                                                                                  

consensus_9989#0      TCTTGGTTTCAATCTGAGATATCTTCTTTTCAAACGCTTCAGGGGCCAAATTTCTTTTTG 656
consensus_9989#1      ------------------------------------------------------------
                                                                                  

consensus_9989#0      GTTTCCCATCTTTGTC 672
consensus_9989#1      ----------------