These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9989#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 672 fasta sequence [AAAATTTACACCTCAGGCTTTCTTCCATTACCAGTTCGCAAGTACATACGCAAACAATGTTCCCTTCCGCAACCAAACGAAACCTCATGGTATATTTGAGATTAATTCGGTATAAAATGAATGTCCATTCGTTCTCAGCGAGCTAAAATTCCTCAGCCCAAATGCATACAGAACTTGAGGACCGATGGCAAAGGCACCAACAAGTAGTAAAAGAAAAAAAAAGCCTACAATGAGAATGCCGGGTGCTTCCTTCTTTCCAGGAGCAGGGGACTTCAAAAACAAACACCGAGCTCTTCCTTTCCTAGCTGCAAATTAGTGTCCGGGACAAGGACTGGAAGCTGGATCAACTTTACTACAGGCCGGATGACCAGTAGCCAATGCTCTTGTACCCTCTTAAAATCTGAAATCCGGGTCGACGTCCATTGCCCACGAAAATTTCGCAATGAGTGATTTGTTGAAAATCTTCTCGATGGGTACTTCATGGCGTTTGCACCATGCAACAGTAATTCTGGGATCAAGGTAATTGATCTTTGAAGTTCCTAGTGCCACTGTCTTTAAATCCTCTTTAATCTTCTTATCCATCTCCATCTTCTCTATCTTGGTTTCAATCTGAGATATCTTCTTTTCAAACGCTTCAGGGGCCAAATTTCTTTTTGGTTTCCCATCTTTGTC] [+] EMBL CB632539 [AAAATTTACACCTCAGGCTTTCTTCCATTACCAGTTCGCAAGTACATACGCAAACAATGTTCCCTTCCGCAACCAAACGAAACCTCATGGCCTATTTGAGATTAATTCGGTATAAAATGAATGTCCATTCGTTCTCAGCGAGCTAAAATTCCTCAGCCCAAATGCATACAGAACTTGAGGACCGATGGCAAAGGCACCAACAAGTAGTAAAAGAAAAAAAAAGCCTACAATGAGAATGCCGGGTGCTTCCTTCTTTCCAGGAGCAGGGGACTTCAAAAACAAACACCGAGCTCTTCCTTTCCTAGCTGCAAATTAGTGTCCGGGACAAGGACTGGAAGCTGGATCAACTTTACTACAGGCCGGATGACCAGTAGCCAATGCTCTTATACCCTCTTAAAATCTGAAATCTGGGTCGACGTCCATTGCCCACGAAAATTTCGCAATGAGTGATTTGTTGAAAATCTTCTCGATGGGTACTTCATGGCGTTTGCACCATGCAACAGTAATTCTGGGATCAAGGGAATTGATCTTTGAAGTTCCTAGTGCCACTGTCTTTAAATCCTCTTTAATCTTCTTATCCATCTCCATCTTCTCTATCTTGGTTTCAATCTGAGATATCTTCTTTTCAAACGCTTCAGGGGCCAAATTTCTTTTTGGTTTCCCATCTTTGTC] [+] EMBL CB662494 [ AGTTCCCTTGTACATACCCAAACAATGTTCCCTTCCGCAACCAAACGAAACCTCATGGTATATTTGAGATTAATTCCGTATAAAATGAATGTCCATTCGTTCTCAGCGAGCTAAAATTCCTCAGCCCAAATGCATACAGAACTTGAGGACCGATGGCAAAGGCACCAACAAGTAGTAAAAGAAAAAAAAAGCCTACAATGAGAATGCCGGGTGCTTCCTTCTTTCCAGGAGCAGGGGACTTCAAAAACAAACACCGAGCTCTTCCTTTCCTAGCTGCAAATTAGTGTCCGGGACAAGGACTGGAAGCTGGATCAACTTTACTACAGGCCGGATGACCAGTAGCCAATGCTCTTGTACCCTCTTAAAATCTGAAATCCGGGTCGACGTCCATTGCCCACGAAAATTTCGCAATGAGTGATTTGTTGAAAATCTTCTCGATGGGTACTTCATGGCGTTTGCACCATGCAACAGTAATTCTGGGATCAAGGTAATTGATCTTTGAAGTTCCTAGTGCCACTGTCTTTAAATCCTCTTTAATCTTCTTATCCATCTCCATCTTCTCTATCTTGGTTTCAATCTGAGATATCTTCTTTTCAAACGCTTCAGGGGCCAAATTTCTTTTTGGTTTCCCATCTTTGTC] [+] EMBL CB677760 [ CGCAACCAAACGAAACCTCATGGTATATTTGAGCTTAATTCGGTATAAAATGAATGTCCATTCGTTCTCAGCGAGCTAAAATTCCTCAGCCCAAATGCATACAGAACTTGAGGACCGATGGCAAAGGCACCAACAAGTAGTAAAAGAAAAAAAAAGCCTACAATGAGAATGCCGGGTGCTTCCTTCTTTCCAGGAGCAGGGGACTTCAAAAACAAACACCGAGCTCTTCCTTTCCTAGCTGCAAATTAGTGTCCGGGACAAGGACTGGAAGCTGGATCAACTTTACTACAGGCCGGATGACCAGTAGCCAATGCTCTTGTACCCTCTTAAAATCTGAAATCCGGGTCGACGTCCATTGCCCACGAAAATTTCGCAATGAGTGATTTGTTGAAAATCTTCTCGATGGGTACTTCATGGCGTTTGCACCATGCAACAGTAATTCTGGGATCAAGGTAATTGATCTTTGAAGTTCCTAGTGCCACTGTCTTTAAATCCTCTTTAATCTTCTTATCCATCTCCATCTTCTCTATCTTGGTTTCAATCTGAGATATCTTCTTTTCAAACGCTTCAGGGGCCAAATTTCTTTTTGGTTTCCCATCTTTGTC] [+] EMBL CB677729 [ GCAACCAAACGAAACCTCATGGTATATTTGACCTTAATTCGGTATAAAATGAATGTCCATTCGTTCTCAGCGAGCTAAAATTCCTCAGCCCAAATGCATACAGAACTTGAGGACCGATGGCAAAGGCACCAACAAGTAGTAAAAGAAAAAAAAAGCCTACAATGAGAATGCCGGGTGCTTCCTTCTTTCCAGGAGCAGGGGACTTCAAAAACAAACACCGAGCTCTTCCTTTCCTAGCTGCAAATTAGTGTCCGGGACAAGGACTGGAAGCTGGATCAACTTTACTACAGGCCGGATGACCAGTAGCCAATGCTCTTGTACCCTCTTAAAATCTGAAATCCGGGTCGACGTCCATTGCCCACGAAAATTTCGCAATGAGTGATTTGTTGAAAATCTTCTCGATGGGTACTTCATGGCGTTTGCACCATGCAACAGTAATTCTGGGATCAAGGTAATTGATCTTTGAAGTTCCTAGTGCCACTGTCTTTAAATCCTCTTTAATCTTCTTATCCATCTCCATCTTCTCTATCTTGGTTTCAATCTGAGATATCTTCTTTTCAAACGCTTCAGGGGCCAAATTTCTTTTTGGTTTCCCATCTTTGTC] [+] EMBL CB664087 [ TCGGTATAAAATGAATGTCCATTCGTTCTCAGCGAGCTAAAATTCCTCAGCCCAAATGCATACAGAACTTGAGGACCGATGGCAAAGGCACCAACAAGTAGTAAAAGAAAAAAAAAGCCTACAATGAGAATGCCGGGTGCTTCCTTCTTTCCAGGAGCAGGGGACTTCAAAAACAAACACCGAGCTCTTCCTTTCCTAGCTGCAAATTAGTGTCCGGGACAAGGACTGGAAGCTGGATCAACTTTACTACAGGCCGGATGACCAGTAGCCAATGCTCTTGTACCCTCTTAAAATCTGAAATCCGGGTCGACGTCCATTGCCCACGAAAATTTCGCAATGAGTGATTTGTTGAAAATCTTCTCGATGGGTACTTCATGGCGTTTGCACCATGCAACAGTAATTCTGGGATCAAGGTAATTGATCTTTGAAGTTCCTAGTGCCACTGTCTTTAAATCCTCTTTAATCTTCTTATCCATCTCCATCTTCTCTATCTTGGTTTCAATCTGAGATATCTTCTTTTCAAACGCTTCAGGGGCCAAATTTCTTTTTGGTTTCCCATCTTTGTC] [-] EMBL AA750562 [ GGACTGGAAGCTGGATCAACTTTACTACAGGCCGGATGACCAGTAGCCAATGCTCTTATACCCTCTTAAAATCTGAAATCTGGGTCGACGTCCATTGCCCACGAAAATTTCGCAATGAGTGATTTGTTGAAAATCTTCTCGATGGGTACTTCATGGCGTTTGCACCATGCAACAGTAATTCTGGGATCAAGGTAATTGATCTTTGAAGTTCCTAGTGCCACTGT ] consensusID : consensus_9989#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 347 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGCAACCAAACGAAACCTCATGGTATATTTGAGATTAATTCGGTATAAAATGAATGTCCATTCGTTCTCAGCGAGCTAAAATTCCTCAGCCCAAATGCATACAGAACTTGAGGACCGATGGCAAAGGCACCAACAAGTAGTAAAAGAAAAAAAAAAAAAGCCTACAATGAGAATGCCGGGTGCTTCCTTCTTTCCAGGAGCAGGGGACTTCAAAAACAAACACCGAGCTCTTCCTTTCCTAGCTGCAAATTAGTGTCCGGGACAAGGACTGGAAGCTGGATCAACTTTACCACAGGC] [-] EMBL CA757670 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGCAACCAAACGAAACCTCATGGTATATTTGAGATTAATTCGGTATAAAATGAATGTCCATTCGTTCTCAGCGAGCTAAAATTCCTCAGCCCAAATGCATACAGAACTTGAGGACCGATGGCAAAGGCACCAACAAGTAGTAAAAGAAAAAAAAAAAAAGCCTACAATGAGAATGCCGGGTGCTTCCTTCTTTCCAGGAGCAGGGGACTTCAAAAACAAACACCGAGCTCTTCCTTTCCTAGCTGCAAATTAGTGTCCGGGACAAGGACTGGAAGCTGGATCAACTTTACCACAGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9989#0 AAAATTTACACCTCAGGCTTTCTTCCATTACCAGTTCGCAAGTACATACGCAAACAATGT 60 consensus_9989#1 -----------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 43 *** ** ** ** * * * * consensus_9989#0 TCCCTTCCGCAACCAAACGAAACCTCATGGTATATTTGAGATTAATTCGGTATAAAATGA 120 consensus_9989#1 TTTTTTCCGCAACCAAACGAAACCTCATGGTATATTTGAGATTAATTCGGTATAAAATGA 103 * ******************************************************** consensus_9989#0 ATGTCCATTCGTTCTCAGCGAGCTAAAATTCCTCAGCCCAAATGCATACAGAACTTGAGG 180 consensus_9989#1 ATGTCCATTCGTTCTCAGCGAGCTAAAATTCCTCAGCCCAAATGCATACAGAACTTGAGG 163 ************************************************************ consensus_9989#0 ACCGATGGCAAAGGCACCAACAAGTAGTAAAAGAAAAAAAAA----GCCTACAATGAGAA 236 consensus_9989#1 ACCGATGGCAAAGGCACCAACAAGTAGTAAAAGAAAAAAAAAAAAAGCCTACAATGAGAA 223 ****************************************** ************** consensus_9989#0 TGCCGGGTGCTTCCTTCTTTCCAGGAGCAGGGGACTTCAAAAACAAACACCGAGCTCTTC 296 consensus_9989#1 TGCCGGGTGCTTCCTTCTTTCCAGGAGCAGGGGACTTCAAAAACAAACACCGAGCTCTTC 283 ************************************************************ consensus_9989#0 CTTTCCTAGCTGCAAATTAGTGTCCGGGACAAGGACTGGAAGCTGGATCAACTTTACTAC 356 consensus_9989#1 CTTTCCTAGCTGCAAATTAGTGTCCGGGACAAGGACTGGAAGCTGGATCAACTTTACCAC 343 ********************************************************* ** consensus_9989#0 AGGCCGGATGACCAGTAGCCAATGCTCTTGTACCCTCTTAAAATCTGAAATCCGGGTCGA 416 consensus_9989#1 AGGC-------------------------------------------------------- 347 **** consensus_9989#0 CGTCCATTGCCCACGAAAATTTCGCAATGAGTGATTTGTTGAAAATCTTCTCGATGGGTA 476 consensus_9989#1 ------------------------------------------------------------ consensus_9989#0 CTTCATGGCGTTTGCACCATGCAACAGTAATTCTGGGATCAAGGTAATTGATCTTTGAAG 536 consensus_9989#1 ------------------------------------------------------------ consensus_9989#0 TTCCTAGTGCCACTGTCTTTAAATCCTCTTTAATCTTCTTATCCATCTCCATCTTCTCTA 596 consensus_9989#1 ------------------------------------------------------------ consensus_9989#0 TCTTGGTTTCAATCTGAGATATCTTCTTTTCAAACGCTTCAGGGGCCAAATTTCTTTTTG 656 consensus_9989#1 ------------------------------------------------------------ consensus_9989#0 GTTTCCCATCTTTGTC 672 consensus_9989#1 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||