Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9992 cluster # 9992       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9992#0 length = 2594 sequences # 6  
consensus_9992#1 length = 812 sequences # 1  

consensusID : consensus_9992#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 2594
fasta sequence
                              [TCGTCCCTCTCACCGGCGAAGCCCCCTTCCCTCTCCGCCCGCCTCTCGTTCGTGTTCGACCAACTCGATGCCCTCGACCGCTCCCGCTTCTCCGACCACTCCGCCCGCGACGCGGCCCTCCGCCGCATCCAGTCCTGGCGCCGCCCCGCCGCGCTTCCGGACGTGCTGCCGGCGGAGGCGGAGCCGCGACCGGCACCCGAACCTGGCGAGCCGGTGAAGAAGGAACCTGAGGCGGTGGACGTTGCCGGAAAGGAGGAGCTGGAGAGGATGAGCGTGGCGGAGGTGCTAAGGAGGGAAGTGGAGCTCGTGCATCCCTGGCCGGAGTGGATCGGGCTGATGGATCGGCTGGCGCAGCAGAAATACTTCGACCTTGGGGGCACCGGCGGCGCTGACGAGGGCTGCGTCGCCGCCGCCGTGCCAATGGACCTAGCGGAAGTCACTCAAGAGACTGGTTTTGACTTCTCTAGGGACTGGACCACTGTCAAGAATGCCTGTATGAACTTCGGCCGTGACCGTTTCGACATCGTCAAGTCATTGCCTAGGAAGGATCTTCAGGTATTGGTTGGCCATGGGTGCCCTAGCATGGATCCGAAAGTTGTGTTTTCTGCAAAGCTGATAAGAAAACTTGTCCATCTTGATGAGGGGGATGTATGCAGTTCTTGTAATTTACGAAATCTATGCTCAAGGGGCTATATTCTTACACGCAAAGAAGATGAAGCTCGAACTCTTGATGTTATGCGTATTTTGTTGTTCTATGGTTTTGATCATGTAAAGGAAACTGTGGAGAACAAGCCACTCCTCAAACTGAAATCTGTGAAGACAGTTGTTCGTAAATTGATACATGACATTGCCAAGCTGAGCGCTGTCCCCATTGATCCCAATCTTCCGCCCCCTATAATCAGAAAGCCACCACCTAAGGTGAAACAACCACCTCCACCACCAAAGAAACGAGTGGGACGTGATGATGTAGAGATGAAGAAAGGAGATTGGCTCTGCCCAAAGTGTGACTTCATGAACTTTGCAAAAAACACTATTTGCTTGCAATGCGATGCTAAACGTCCCAAAAGGCAACTTCTCCCTGGAGAATGGGAGTGTCCTCGGTGCAACTTTTTGAACTACAGGCGGAATATGTCGTGCTTCCATTGTGAACACAACCGTCCACCAGATGAATACACCAACAGCCAAATGGAAGCTAATCAATCTGTTCCACGAAAGCGATTGGAAAGACCTGCTCACAAATCTGAAGTTTGTAATGCATGGAACTTTGATTTTGATGACAATGAATCAGATGGTGCTGATGTTGCAGCATTTGAGTTTGCTGATTCATCAAAGGCCAGGAATAGCTTGTCTGTGGACAACACGTCTTCTAGAGGTGGTTCTAAGTTCTCTGAGGACAACGAATTTGGAATTAATGAAACATGGAGAGAGGGAACAGAGAGAAGGTTTTCAGAAAGAGAAAGAGTTGGTTTTGATGACTTTGATGACGAAGAGGATGATATTGATAGTTACGAGCTTGATTTATCAAAGGGTGGTCAGACAGATGGAATGTCAAGGATGAGTTATTTGGACTTTGAAGATGCTTGTGACTCGGCAGACCTAAATGGGCGTGCTAAAATTAGGAACTCTAAGCACGGTGAAGAGGAGGATATAATAGGGTCTCCTGAGGATGAGGAATTTGATCACCCTTCCCTGAGATCTAGTCATCTTGCTGCTTCTTGGAGGAAACCTGTAAGCTGCAATGGTTCCAACAACCACAGAAGGGAATCTTTTGGCTCGGAGAGTGATGATGGGATTATTTCTGATTTGGATGGGGATATTAATGAAGGATTGAAATGTAAAGGAGGCCATAACAAGCATTATCCTAGAAGAGTTGTTGTTAGGCATAATGAACTTGATGATGTACCATTTTCAGATATGGATTGTGACATAGGTGGCTGTGTTCAGTCAGATAGGAGGAACAGGTTCTCAACAAAGTTCAGTGATGAATTCCATGCCAGGGCCTCCAACTCAAATAGGAAGAAAATGAATGAACGATTCAAGAGTTCTGATATGCGTGATGGTCACCCGCCCTTTGATAGGACTCGTACAAGAGGTACTACTGAACTACATGATGGCTCAAGAGATCTACAGAGTAACGCAAGAAGAAATTGGGTTAAAAGTGGTGGATTTGATGATAACAACAGGCCGCTCAGGCGTTTGAACAGAAGATAGGGGAATCCAGTTACTGTGCAGTCCTTCCAACTAGCTGTCGTATTAGTGTTCTCCGATGTAAGGTGCAGCTTTTTTAATTGGAAACATAGAGCTATGAGATTGCATGCAGATCTGCGGTTGATCTCAATCCAAAGATCCACATGCTAAATTTCCTGCATGCAATACGGGATTGATGCTATTGAATCCCAAGGTCCGGCTAAAATGTGTGCCTAGAATATATTTCTAGCCTTTTCTCCCCGACTAAGCATTTCTGGTCTTGAGACAAAGATGTTTAAGCATTCCCAGTAAAATAAATGTGTAAGTATTCATCATGGTTAGGGTCGTATGAAAAGAACTGTTCTCGATTTTATACGAATTTCTGTTCCATCGTATTTTCAAAAAAA]

[+] EMBL AK101785             [TCGTCCCTCTCACCGGCGAAGCCCCCTTCCCTCTCCGCCCGCCTCTCGTTCGTGTTCGACCAACTCGATGCCCTCGACCGCTCCCGCTTCTCCGACCACTCCGCCCGCGACGCGGCCCTCCGCCGCATCCAGTCCTGGCGCCGCCCCGCCGCGCTTCCGGACGTGCTGCCGGCGGAGGCGGAGCCGCGACCGGCACCCGAACCTGGCGAGCCGGTGAAGAAGGAACCTGAGGCGGTGGACGTTGCCGGAAAGGAGGAGCTGGAGAGGATGAGCGTGGCGGAGGTGCTAAGGAGGGAAGTGGAGCTCGTGCATCCCTGGCCGGAGTGGATCGGGCTGATGGATCGGCTGGCGCAGCAGAAATACTTCGACCTTGGGGGCACCGGCGGCGCTGACGAGGGCTGCGTCGCCGCCGCCGTGCCAATGGACCTAGCGGAAGTCACTCAAGAGACTGGTTTTGACTTCTCTAGGGACTGGACCACTGTCAAGAATGCCTGTATGAACTTCGGCCGTGACCGTTTCGACATCGTCAAGTCATTGCCTAGGAAGGATCTTCAGGTATTGGTTGGCCATGGGTGCCCTAGCATGGATCCGAAAGTTGTGTTTTCTGCAAAGCTGATAAGAAAACTTGTCCATCTTGATGAGGGGGATGTATGCAGTTCTTGTAATTTACGAAATCTATGCTCAAGGGGCTATATTCTTACACGCAAAGAAGATGAAGCTCGAACTCTTGATGTTATGCGTATTTTGTTGTTCTATGGTTTTGATCATGTAAAGGAAACTGTGGAGAACAAGCCACTCCTCAAACTGAAATCTGTGAAGACAGTTGTTCGTAAATTGATACATGACATTGCCAAGCTGAGCGCTGTCCCCATTGATCCCAATCTTCCGCCCCCTATAATCAGAAAGCCACCACCTAAGGTGAAACAACCACCTCCACCACCAAAGAAACGAGTGGGACGTGATGATGTAGAGATGAAGAAAGGAGATTGGCTCTGCCCAAAGTGTGACTTCATGAACTTTGCAAAAAACACTATTTGCTTGCAATGCGATGCTAAACGTCCCAAAAGGCAACTTCTCCCTGGAGAATGGGAGTGTCCTCGGTGCAACTTTTTGAACTACAGGCGGAATATGTCGTGCTTCCATTGTGAACACAACCGTCCACCAGATGAATACACCAACAGCCAAATGGAAGCTAATCAATCTGTTCCACGAAAGCGATTGGAAAGACCTGCTCACAAATCTGAAGTTTGTAATGCATGGAACTTTGATTTTGATGACAATGAATCAGATGGTGCTGATGTTGCAGCATTTGAGTTTGCTGATTCATCAAAGGCCAGGAATAGCTTGTCTGTGGACAACACGTCTTCTAGAGGTGGTTCTAAGTTCTCTGAGGACAACGAATTTGGAATTAATGAAACATGGAGAGAGGGAACAGAGAGAAGGTTTTCAGAAAGAGAAAGAGTTGGTTTTGATGACTTTGATGACGAAGAGGATGATATTGATAGTTACGAGCTTGATTTATCAAAGGGTGGTCAGACAGATGGAATGTCAAGGATGAGTTATTTGGACTTTGAAGATGCTTGTGACTCGGCAGACCTAAATGGGCGTGCTAAAATTAGGAACTCTAAGCACGGTGAAGAGGAGGATATAATAGGGTCTCCTGAGGATGAGGAATTTGATCACCCTTCCCTGAGATCTAGTCATCTTGCTGCTTCTTGGAGGAAACCTGTAAGCTGCAATGGTTCCAACAACCACAGAAGGGAATCTTTTGGCTCGGAGAGTGATGATGGGATTATTTCTGATTTGGATGGGGATATTAATGAAGGATTGAAATGTAAAGGAGGCCATAACAAGCATTATCCTAGAAGAGTTGTTGTTAGGCATAATGAACTTGATGATGTACCATTTTCAGATATGGATTGTGACATAGGTGGCTGTGTTCAGTCAGATAGGAGGAACAGGTTCTCAACAAAGTTCAGTGATGAATTCCATGCCAGGGCCTCCAACTCAAATAGGAAGAAAATGAATGAACGATTCAAGAGTTCTGATATGCGTGATGGTCACCCGCCCTTTGATAGGACTCGTACAAGAGGTACTACTGAACTACATGATGGCTCAAGAGATCTACAGAGTAACGCAAGAAGAAATTGGGTTAAAAGTGGTGGATTTGATGATAACAACAGGCCGCTCAGGCGTTTGAACAGAAGATAGGGGAATCCAGTTACTGTGCAGTCCTTCCAACTAGCTGTCGTATTAGTGTTCTCCGATGTAAGGTGCAGCTTTTTTAATTGGAAACATAGAGCTATGAGATTGCATGCAGATCTGCGGTTGATCTCAATCCAAAGATCCACATGCTAAATTTCCTGCATGCAATACGGGATTGATGCTATTGAATCCCAAGGTCCGGCTAAAATGTGTGCCTAGAATATATTTCTAGCCTTTTCTCCCCGACTAAGCATTTCTGGTCTTGAGACAAAGATGTTTAAGCATTCCCAGTAAAATAAATGTGTAAGTATTCATCATGGTTAGGGTCGTATGAAAAGAACTGTTCTCG                                        ]
[-] EMBL CB627301             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AGGCATAATGAACTTGATGATGTACCATTTTCAGATATGGATTGTGACATAGGTGGCTGTGTTCAGTCAGATAGGAGGAACAGGTTCTCAACAAAGTTCAGTGATGAATTCCATGCCAGGGCCTCCAACTCAAATAGGAAGAAAATGAATGAACGATTCAAGAGTTCTGATATGCGTGATGGTCACGCGCCCTTTGATAGGACTCGTACAAGAGGTACTACTGAACTACATGATGGCTCAAGAGATCTACAGAGTAACGCAAGAAGAAATTGGGTTAAAAGTGGTGGATTTGATGATAACAACAGGCCGCTCAGGCGTTTGAACAGAAGATAGGGGAATCCAGTTACTGTGCAGTCCTTCCAACTAGCTGTCGTATTAGTGTTCTCCGATGTAAGGTGCAGCTTTTTTAATTGGAAACATAGAGCTATGAGATTGCATGCAGATCTGCGGTTGATCTCAATCCAAAGATCCACATGCCAAATTTCCTGCATGCAATACGGGATTGATGCTATTGAATCCCAAGGTCCGGCTAAAATGTGTGCCTAGAATATATTTCTAGCCTTTTCTCCCCGACTAAGCATTTCTGGTCTTGAGACAAAGATGTTTAAGC                                                                                                          ]
[-] EMBL CF304530             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGAATTCCATGCCAGGGCCTCCAACTCAAATAGGAAGAAAATGAATGAACGATTCAAGAGTTCTGATATGCGTGATGGTCACCCGCCCTTTGATAGGACTCGTACAAGAGGTACTACTGAACTACATGATGGCTCAAGAGATCTACAGAGTAACGCAAGAAGAAATTGGGTTAAAAGTGGTGGATTTGATGATAACAACAGGCCGCTCAGGCGTTTGAACAGAAGATAGGGGAATCCAGTTACTGTGCAGTCCTTCCAACTAGCTGTCGTATTAGTGTTCTCCGATGTAAGGTGCAGCTTTTTTAATTGGAAACATAGAGCTATGAGATTGCATGCAGATCTGCGGTTGATCTCAATCCAAAGATCCACATGCTAAATTTCCTGCATGCAATACGGGATTGATGCTATTGAATCCCAAGGTCCGGCTAAAATGTGTGCCTAGAATATATTTCTAGCCTTTTCTCCCCGACTAAGCATTTCTGGTCTTGAGACAAAGATGTTTAAGCATTCCCAGTAAAATAAATGTGTAAGTATTCATCATGGTTAGGGTCGTATGAAAAGAACTGTTCTCGATTTTATACGAATTTCTGTTCCATCGTATTTTCAAAAAAA]
[-] EMBL CF303349             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AGGAAGAAAATGAATGAACGATTCAAGAGTTCTGATATGCGTGATGGTCACCCGCCCTTTGATAGGACTCGTACAAGAGGTACTACTGAACTACATGATGGCTCAAGAGATCTACAGAGTAACGCAAGAAGAAATTGGGTTAAAAGTGGTGGATTTGATGATAACAACAGGCCGCTCAGGCGTTTGAACAGAAGATAGGGGAATCCAGTTACTGTGCAGTCCTTCCAACTAGCTGTCGTATTAGTGTTCTCCGATGTAAGGTGCAGCTTTTTTAATTGGAAACATAGAGCTATGAGATTGCATGCAGATCTGCGGTTGATCTCAATCCAAAGATCCACATGCTAAATTTCCTGCATGCAATACGGGATTGATGCTATTGAATCCCAAGGTCCGGCTAAAATGTGTGCCTAGAATATATTTCTAGCCTTTTCTCCCCGAATAAGCATTTCTGGTCTTGAGACAAAGATGTTTAAGCATTCCCAGTAAAATAAATGTGTAAGTATTCATCATGGTTAGGGTCGTATGAAAAGAACTGTTCTCGATTTTATACGAATTTCTGTTCCATCGTATTTTCAAAAAAA]
[-] EMBL CF304638             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GATTCAAGAGTTCTGATATGCGTGATGGTCACCCGCCCTTTGATAGGACTCGTACAAGAGGTACTACTGAACTACATGATGGCTCAAGAGATCTACAGAGTAACGCAAGAAGAAATTGGGTTAAAAGTGGTGGATTTGATGATAACAACAGGCCGCTCAGGCGTTTGAACAGAAGATAGGGGAATCCAGTTACTGTGCAGTCCTTCCAACTAGCTGTCGTATTAGTGTTCTCCGATGTAAGGTGCAGCTTTTTTAATTGGAAACATAGAGCTATGAGATTGCATGCAGATCTGCGGTTGATCTCAATCCAAAGATCCACATGCTAAATTTCCTGCATGCAATACGGGATTGATGCTATTGAATCCCAAGGTCCGGCTAAAATGTGTGCCTAGAATATATTTCTAGCCTTTTCTCCCCGACTAAGCATTTCTGGTCTTGAGACAAAGATGTTTAAGCATTCCCAGTAAAATAAATGTGTAAGTATTCATCATGGTTAGGGTCGTATGAAAAGAACTGTTCTCGATTTTATACGAATTTCTGTTCCATCGTATTTTCAAAAAAA]
[-] EMBL CF303947             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GTACAAGAGGTACTACTGAACTACATGATGGCTCAAGAGATCTACAGAGTAACGCAAGAAGAAATTGGGTTAAAAGTGGTGGATTTGATGATAACAACAGGCCGCTCAGGCGTTTGAACAGAAGATAGGGGAATCCAGTTACTGTGCAGTCCTTCCAACTAGCTGTCGTATTAGTGTTCTCCGATGTAAGGTGCAGCTTTTTTAATTGGAAACATAGAGCTATGAGATTGCATGCAGATCTGCGGTTGATCTCAATCCAAAGATCCACATGCTAAATTTCCTGCATGCAATACGGGATTGATGCTATTGAATCCCAAGGTCCGGCTAAAATGTGTGCCTAGAATATATTTCTAGCCTTTTCTCCCCGACTAAGCATTTCTGGTCTTGAGACAAAGATGTTTAAGCATTCCCAGTAAAATAAATGTGTAAGTATTCATCATGGTTAGGGTCGTATGAAAAGAACTGTTCTCGATTTTATACGAATTTCTGTTCCATCGTATTTTCAAAAAAA]


>consensus_9992#0 TCGTCCCTCTCACCGGCGAAGCCCCCTTCCCTCTCCGCCCGCCTCTCGTTCGTGTTCGAC CAACTCGATGCCCTCGACCGCTCCCGCTTCTCCGACCACTCCGCCCGCGACGCGGCCCTC CGCCGCATCCAGTCCTGGCGCCGCCCCGCCGCGCTTCCGGACGTGCTGCCGGCGGAGGCG GAGCCGCGACCGGCACCCGAACCTGGCGAGCCGGTGAAGAAGGAACCTGAGGCGGTGGAC GTTGCCGGAAAGGAGGAGCTGGAGAGGATGAGCGTGGCGGAGGTGCTAAGGAGGGAAGTG GAGCTCGTGCATCCCTGGCCGGAGTGGATCGGGCTGATGGATCGGCTGGCGCAGCAGAAA TACTTCGACCTTGGGGGCACCGGCGGCGCTGACGAGGGCTGCGTCGCCGCCGCCGTGCCA ATGGACCTAGCGGAAGTCACTCAAGAGACTGGTTTTGACTTCTCTAGGGACTGGACCACT GTCAAGAATGCCTGTATGAACTTCGGCCGTGACCGTTTCGACATCGTCAAGTCATTGCCT AGGAAGGATCTTCAGGTATTGGTTGGCCATGGGTGCCCTAGCATGGATCCGAAAGTTGTG TTTTCTGCAAAGCTGATAAGAAAACTTGTCCATCTTGATGAGGGGGATGTATGCAGTTCT TGTAATTTACGAAATCTATGCTCAAGGGGCTATATTCTTACACGCAAAGAAGATGAAGCT CGAACTCTTGATGTTATGCGTATTTTGTTGTTCTATGGTTTTGATCATGTAAAGGAAACT GTGGAGAACAAGCCACTCCTCAAACTGAAATCTGTGAAGACAGTTGTTCGTAAATTGATA CATGACATTGCCAAGCTGAGCGCTGTCCCCATTGATCCCAATCTTCCGCCCCCTATAATC AGAAAGCCACCACCTAAGGTGAAACAACCACCTCCACCACCAAAGAAACGAGTGGGACGT GATGATGTAGAGATGAAGAAAGGAGATTGGCTCTGCCCAAAGTGTGACTTCATGAACTTT GCAAAAAACACTATTTGCTTGCAATGCGATGCTAAACGTCCCAAAAGGCAACTTCTCCCT GGAGAATGGGAGTGTCCTCGGTGCAACTTTTTGAACTACAGGCGGAATATGTCGTGCTTC CATTGTGAACACAACCGTCCACCAGATGAATACACCAACAGCCAAATGGAAGCTAATCAA TCTGTTCCACGAAAGCGATTGGAAAGACCTGCTCACAAATCTGAAGTTTGTAATGCATGG AACTTTGATTTTGATGACAATGAATCAGATGGTGCTGATGTTGCAGCATTTGAGTTTGCT GATTCATCAAAGGCCAGGAATAGCTTGTCTGTGGACAACACGTCTTCTAGAGGTGGTTCT AAGTTCTCTGAGGACAACGAATTTGGAATTAATGAAACATGGAGAGAGGGAACAGAGAGA AGGTTTTCAGAAAGAGAAAGAGTTGGTTTTGATGACTTTGATGACGAAGAGGATGATATT GATAGTTACGAGCTTGATTTATCAAAGGGTGGTCAGACAGATGGAATGTCAAGGATGAGT TATTTGGACTTTGAAGATGCTTGTGACTCGGCAGACCTAAATGGGCGTGCTAAAATTAGG AACTCTAAGCACGGTGAAGAGGAGGATATAATAGGGTCTCCTGAGGATGAGGAATTTGAT CACCCTTCCCTGAGATCTAGTCATCTTGCTGCTTCTTGGAGGAAACCTGTAAGCTGCAAT GGTTCCAACAACCACAGAAGGGAATCTTTTGGCTCGGAGAGTGATGATGGGATTATTTCT GATTTGGATGGGGATATTAATGAAGGATTGAAATGTAAAGGAGGCCATAACAAGCATTAT CCTAGAAGAGTTGTTGTTAGGCATAATGAACTTGATGATGTACCATTTTCAGATATGGAT TGTGACATAGGTGGCTGTGTTCAGTCAGATAGGAGGAACAGGTTCTCAACAAAGTTCAGT GATGAATTCCATGCCAGGGCCTCCAACTCAAATAGGAAGAAAATGAATGAACGATTCAAG AGTTCTGATATGCGTGATGGTCACCCGCCCTTTGATAGGACTCGTACAAGAGGTACTACT GAACTACATGATGGCTCAAGAGATCTACAGAGTAACGCAAGAAGAAATTGGGTTAAAAGT GGTGGATTTGATGATAACAACAGGCCGCTCAGGCGTTTGAACAGAAGATAGGGGAATCCA GTTACTGTGCAGTCCTTCCAACTAGCTGTCGTATTAGTGTTCTCCGATGTAAGGTGCAGC TTTTTTAATTGGAAACATAGAGCTATGAGATTGCATGCAGATCTGCGGTTGATCTCAATC CAAAGATCCACATGCTAAATTTCCTGCATGCAATACGGGATTGATGCTATTGAATCCCAA GGTCCGGCTAAAATGTGTGCCTAGAATATATTTCTAGCCTTTTCTCCCCGACTAAGCATT TCTGGTCTTGAGACAAAGATGTTTAAGCATTCCCAGTAAAATAAATGTGTAAGTATTCAT CATGGTTAGGGTCGTATGAAAAGAACTGTTCTCGATTTTATACGAATTTCTGTTCCATCG TATTTTCAAAAAAA



consensusID : consensus_9992#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 812
fasta sequence
                              [CCGCCGCTTCCGCCGCTGCACCATCCCCACCCTCCCCCCGCTCCTCCCCCGCCTCCTTTCCTCCTCCTTTTCCCATTGCCCTTCGTCGCCGCCGCCGTGCCAATGGACCTAGCGGAAGTCACTCAAGAGACTGGTTTTGACTTCTCTAGGGACTGGACCACTGTCAAGAATGCCTGTATGAACTTCGGCCGTGACCGTTTCGACATCGTCAAGTCATTGTCTAGGAAGGATCTTCAGGTATTGGTTGGCCATGGGTGCCCTAGCATGGATCCGAAAGTTGTGTTTTCTGCAAAGCTGATAAGAAAACTTGTCCATCTTGATGAGGGGGATGTATGCAGTTCTTGTAATTTACGAAATCTATGCTCAAGGGGCTATATTCTTACACGCAAAGAAGATGAAGCTCGAACTCTTGATGTTATGCGTATTTTGTTGTTCTATGGTTTTGATCATGTAAAGGAAACTGTGGAGAACAAGCCACTCCTCAAACTGAAATCTGTGAAGACAGTTGTTCGTAAATTGATACATGACATTGCCAAGCTGAGCGCTGTCCCCATTGATCCCAATCTTCCGCCCCCTATAATCAGAAAGCCACCACCTAAGGTGAAACAACCACCTCCACCACCAAAGAAACGAGTGGGACGTGATGATGTAGAGATGAAGAAAGGAGATTGGCTCTGCCCAAAGTGTGACTTCATGAACTTTGCAAAAAACACTATTTGCTTGCAATGCGATGCTAAACGTCCCAAAAGGCAACTTCTCCCTGGAGAATGGGAGTGTCCTCGGTGCAACTTTTTGAACTACAGGCGGAATAT]

[+] EMBL CB627300             [CCGCCGCTTCCGCCGCTGCACCATCCCCACCCTCCCCCCGCTCCTCCCCCGCCTCCTTTCCTCCTCCTTTTCCCATTGCCCTTCGTCGCCGCCGCCGTGCCAATGGACCTAGCGGAAGTCACTCAAGAGACTGGTTTTGACTTCTCTAGGGACTGGACCACTGTCAAGAATGCCTGTATGAACTTCGGCCGTGACCGTTTCGACATCGTCAAGTCATTGTCTAGGAAGGATCTTCAGGTATTGGTTGGCCATGGGTGCCCTAGCATGGATCCGAAAGTTGTGTTTTCTGCAAAGCTGATAAGAAAACTTGTCCATCTTGATGAGGGGGATGTATGCAGTTCTTGTAATTTACGAAATCTATGCTCAAGGGGCTATATTCTTACACGCAAAGAAGATGAAGCTCGAACTCTTGATGTTATGCGTATTTTGTTGTTCTATGGTTTTGATCATGTAAAGGAAACTGTGGAGAACAAGCCACTCCTCAAACTGAAATCTGTGAAGACAGTTGTTCGTAAATTGATACATGACATTGCCAAGCTGAGCGCTGTCCCCATTGATCCCAATCTTCCGCCCCCTATAATCAGAAAGCCACCACCTAAGGTGAAACAACCACCTCCACCACCAAAGAAACGAGTGGGACGTGATGATGTAGAGATGAAGAAAGGAGATTGGCTCTGCCCAAAGTGTGACTTCATGAACTTTGCAAAAAACACTATTTGCTTGCAATGCGATGCTAAACGTCCCAAAAGGCAACTTCTCCCTGGAGAATGGGAGTGTCCTCGGTGCAACTTTTTGAACTACAGGCGGAATAT]


>consensus_9992#1 CCGCCGCTTCCGCCGCTGCACCATCCCCACCCTCCCCCCGCTCCTCCCCCGCCTCCTTTC CTCCTCCTTTTCCCATTGCCCTTCGTCGCCGCCGCCGTGCCAATGGACCTAGCGGAAGTC ACTCAAGAGACTGGTTTTGACTTCTCTAGGGACTGGACCACTGTCAAGAATGCCTGTATG AACTTCGGCCGTGACCGTTTCGACATCGTCAAGTCATTGTCTAGGAAGGATCTTCAGGTA TTGGTTGGCCATGGGTGCCCTAGCATGGATCCGAAAGTTGTGTTTTCTGCAAAGCTGATA AGAAAACTTGTCCATCTTGATGAGGGGGATGTATGCAGTTCTTGTAATTTACGAAATCTA TGCTCAAGGGGCTATATTCTTACACGCAAAGAAGATGAAGCTCGAACTCTTGATGTTATG CGTATTTTGTTGTTCTATGGTTTTGATCATGTAAAGGAAACTGTGGAGAACAAGCCACTC CTCAAACTGAAATCTGTGAAGACAGTTGTTCGTAAATTGATACATGACATTGCCAAGCTG AGCGCTGTCCCCATTGATCCCAATCTTCCGCCCCCTATAATCAGAAAGCCACCACCTAAG GTGAAACAACCACCTCCACCACCAAAGAAACGAGTGGGACGTGATGATGTAGAGATGAAG AAAGGAGATTGGCTCTGCCCAAAGTGTGACTTCATGAACTTTGCAAAAAACACTATTTGC TTGCAATGCGATGCTAAACGTCCCAAAAGGCAACTTCTCCCTGGAGAATGGGAGTGTCCT CGGTGCAACTTTTTGAACTACAGGCGGAATAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9992#0      TCGTCCCTCTCACCGGCGAAGCCCCCTTCCCTCTCCGCCCGCCTCTCGTTCGTGTTCGAC 60
consensus_9992#1      ------------------------------------------------------------
                                                                                  

consensus_9992#0      CAACTCGATGCCCTCGACCGCTCCCGCTTCTCCGACCACTCCGCCCGCGACGCGGCCCTC 120
consensus_9992#1      ------------------------------------------------------------
                                                                                  

consensus_9992#0      CGCCGCATCCAGTCCTGGCGCCGCCCCGCCGCGCTTCCGGACGTGCTGCCGGCGGAGGCG 180
consensus_9992#1      ------------------------------------------------------------
                                                                                  

consensus_9992#0      GAGCCGCGACCGGCACCCGAACCTGGCGAGCCGGTGAAGAAGGAACCTGAGGCGGTGGAC 240
consensus_9992#1      ------------------------------------------------------------
                                                                                  

consensus_9992#0      GTTGCCGGAAAGGAGGAGCTGGAGAGGATGAGCGTGGCGGAGGTGCTAAGGAGGGAAGTG 300
consensus_9992#1      ------------------------------------------------------------
                                                                                  

consensus_9992#0      GAGCTCGTGCATCCCTGGCCGGAGTGGATCGGGCTGATGGATCGGCTG-GCGCAGCAGAA 359
consensus_9992#1      ---------------------CCGCCGCTTCCGCCGCTGCACCATCCCCACCCTCCCCCC 39
                                             *  * *   ** * ** * *  *    * *  *    

consensus_9992#0      ATACTTCGACCTTGGGGGCACCGGCGGCGCTGACGAGGGC--TGCGTCGCCGCCGCCGTG 417
consensus_9992#1      GCTCCTCCCCCGCCTCCTTTCCTCCTCCTTTTCCCATTGCCCTTCGTCGCCGCCGCCGTG 99
                         * **  **         **  *  *  *  * *  **  * ****************

consensus_9992#0      CCAATGGACCTAGCGGAAGTCACTCAAGAGACTGGTTTTGACTTCTCTAGGGACTGGACC 477
consensus_9992#1      CCAATGGACCTAGCGGAAGTCACTCAAGAGACTGGTTTTGACTTCTCTAGGGACTGGACC 159
                      ************************************************************

consensus_9992#0      ACTGTCAAGAATGCCTGTATGAACTTCGGCCGTGACCGTTTCGACATCGTCAAGTCATTG 537
consensus_9992#1      ACTGTCAAGAATGCCTGTATGAACTTCGGCCGTGACCGTTTCGACATCGTCAAGTCATTG 219
                      ************************************************************

consensus_9992#0      CCTAGGAAGGATCTTCAGGTATTGGTTGGCCATGGGTGCCCTAGCATGGATCCGAAAGTT 597
consensus_9992#1      TCTAGGAAGGATCTTCAGGTATTGGTTGGCCATGGGTGCCCTAGCATGGATCCGAAAGTT 279
                       ***********************************************************

consensus_9992#0      GTGTTTTCTGCAAAGCTGATAAGAAAACTTGTCCATCTTGATGAGGGGGATGTATGCAGT 657
consensus_9992#1      GTGTTTTCTGCAAAGCTGATAAGAAAACTTGTCCATCTTGATGAGGGGGATGTATGCAGT 339
                      ************************************************************

consensus_9992#0      TCTTGTAATTTACGAAATCTATGCTCAAGGGGCTATATTCTTACACGCAAAGAAGATGAA 717
consensus_9992#1      TCTTGTAATTTACGAAATCTATGCTCAAGGGGCTATATTCTTACACGCAAAGAAGATGAA 399
                      ************************************************************

consensus_9992#0      GCTCGAACTCTTGATGTTATGCGTATTTTGTTGTTCTATGGTTTTGATCATGTAAAGGAA 777
consensus_9992#1      GCTCGAACTCTTGATGTTATGCGTATTTTGTTGTTCTATGGTTTTGATCATGTAAAGGAA 459
                      ************************************************************

consensus_9992#0      ACTGTGGAGAACAAGCCACTCCTCAAACTGAAATCTGTGAAGACAGTTGTTCGTAAATTG 837
consensus_9992#1      ACTGTGGAGAACAAGCCACTCCTCAAACTGAAATCTGTGAAGACAGTTGTTCGTAAATTG 519
                      ************************************************************

consensus_9992#0      ATACATGACATTGCCAAGCTGAGCGCTGTCCCCATTGATCCCAATCTTCCGCCCCCTATA 897
consensus_9992#1      ATACATGACATTGCCAAGCTGAGCGCTGTCCCCATTGATCCCAATCTTCCGCCCCCTATA 579
                      ************************************************************

consensus_9992#0      ATCAGAAAGCCACCACCTAAGGTGAAACAACCACCTCCACCACCAAAGAAACGAGTGGGA 957
consensus_9992#1      ATCAGAAAGCCACCACCTAAGGTGAAACAACCACCTCCACCACCAAAGAAACGAGTGGGA 639
                      ************************************************************

consensus_9992#0      CGTGATGATGTAGAGATGAAGAAAGGAGATTGGCTCTGCCCAAAGTGTGACTTCATGAAC 1017
consensus_9992#1      CGTGATGATGTAGAGATGAAGAAAGGAGATTGGCTCTGCCCAAAGTGTGACTTCATGAAC 699
                      ************************************************************

consensus_9992#0      TTTGCAAAAAACACTATTTGCTTGCAATGCGATGCTAAACGTCCCAAAAGGCAACTTCTC 1077
consensus_9992#1      TTTGCAAAAAACACTATTTGCTTGCAATGCGATGCTAAACGTCCCAAAAGGCAACTTCTC 759
                      ************************************************************

consensus_9992#0      CCTGGAGAATGGGAGTGTCCTCGGTGCAACTTTTTGAACTACAGGCGGAATATGTCGTGC 1137
consensus_9992#1      CCTGGAGAATGGGAGTGTCCTCGGTGCAACTTTTTGAACTACAGGCGGAATAT------- 812
                      *****************************************************       

consensus_9992#0      TTCCATTGTGAACACAACCGTCCACCAGATGAATACACCAACAGCCAAATGGAAGCTAAT 1197
consensus_9992#1      ------------------------------------------------------------
                                                                                  

consensus_9992#0      CAATCTGTTCCACGAAAGCGATTGGAAAGACCTGCTCACAAATCTGAAGTTTGTAATGCA 1257
consensus_9992#1      ------------------------------------------------------------
                                                                                  

consensus_9992#0      TGGAACTTTGATTTTGATGACAATGAATCAGATGGTGCTGATGTTGCAGCATTTGAGTTT 1317
consensus_9992#1      ------------------------------------------------------------
                                                                                  

consensus_9992#0      GCTGATTCATCAAAGGCCAGGAATAGCTTGTCTGTGGACAACACGTCTTCTAGAGGTGGT 1377
consensus_9992#1      ------------------------------------------------------------
                                                                                  

consensus_9992#0      TCTAAGTTCTCTGAGGACAACGAATTTGGAATTAATGAAACATGGAGAGAGGGAACAGAG 1437
consensus_9992#1      ------------------------------------------------------------
                                                                                  

consensus_9992#0      AGAAGGTTTTCAGAAAGAGAAAGAGTTGGTTTTGATGACTTTGATGACGAAGAGGATGAT 1497
consensus_9992#1      ------------------------------------------------------------
                                                                                  

consensus_9992#0      ATTGATAGTTACGAGCTTGATTTATCAAAGGGTGGTCAGACAGATGGAATGTCAAGGATG 1557
consensus_9992#1      ------------------------------------------------------------
                                                                                  

consensus_9992#0      AGTTATTTGGACTTTGAAGATGCTTGTGACTCGGCAGACCTAAATGGGCGTGCTAAAATT 1617
consensus_9992#1      ------------------------------------------------------------
                                                                                  

consensus_9992#0      AGGAACTCTAAGCACGGTGAAGAGGAGGATATAATAGGGTCTCCTGAGGATGAGGAATTT 1677
consensus_9992#1      ------------------------------------------------------------
                                                                                  

consensus_9992#0      GATCACCCTTCCCTGAGATCTAGTCATCTTGCTGCTTCTTGGAGGAAACCTGTAAGCTGC 1737
consensus_9992#1      ------------------------------------------------------------
                                                                                  

consensus_9992#0      AATGGTTCCAACAACCACAGAAGGGAATCTTTTGGCTCGGAGAGTGATGATGGGATTATT 1797
consensus_9992#1      ------------------------------------------------------------
                                                                                  

consensus_9992#0      TCTGATTTGGATGGGGATATTAATGAAGGATTGAAATGTAAAGGAGGCCATAACAAGCAT 1857
consensus_9992#1      ------------------------------------------------------------
                                                                                  

consensus_9992#0      TATCCTAGAAGAGTTGTTGTTAGGCATAATGAACTTGATGATGTACCATTTTCAGATATG 1917
consensus_9992#1      ------------------------------------------------------------
                                                                                  

consensus_9992#0      GATTGTGACATAGGTGGCTGTGTTCAGTCAGATAGGAGGAACAGGTTCTCAACAAAGTTC 1977
consensus_9992#1      ------------------------------------------------------------
                                                                                  

consensus_9992#0      AGTGATGAATTCCATGCCAGGGCCTCCAACTCAAATAGGAAGAAAATGAATGAACGATTC 2037
consensus_9992#1      ------------------------------------------------------------
                                                                                  

consensus_9992#0      AAGAGTTCTGATATGCGTGATGGTCACCCGCCCTTTGATAGGACTCGTACAAGAGGTACT 2097
consensus_9992#1      ------------------------------------------------------------
                                                                                  

consensus_9992#0      ACTGAACTACATGATGGCTCAAGAGATCTACAGAGTAACGCAAGAAGAAATTGGGTTAAA 2157
consensus_9992#1      ------------------------------------------------------------
                                                                                  

consensus_9992#0      AGTGGTGGATTTGATGATAACAACAGGCCGCTCAGGCGTTTGAACAGAAGATAGGGGAAT 2217
consensus_9992#1      ------------------------------------------------------------
                                                                                  

consensus_9992#0      CCAGTTACTGTGCAGTCCTTCCAACTAGCTGTCGTATTAGTGTTCTCCGATGTAAGGTGC 2277
consensus_9992#1      ------------------------------------------------------------
                                                                                  

consensus_9992#0      AGCTTTTTTAATTGGAAACATAGAGCTATGAGATTGCATGCAGATCTGCGGTTGATCTCA 2337
consensus_9992#1      ------------------------------------------------------------
                                                                                  

consensus_9992#0      ATCCAAAGATCCACATGCTAAATTTCCTGCATGCAATACGGGATTGATGCTATTGAATCC 2397
consensus_9992#1      ------------------------------------------------------------
                                                                                  

consensus_9992#0      CAAGGTCCGGCTAAAATGTGTGCCTAGAATATATTTCTAGCCTTTTCTCCCCGACTAAGC 2457
consensus_9992#1      ------------------------------------------------------------
                                                                                  

consensus_9992#0      ATTTCTGGTCTTGAGACAAAGATGTTTAAGCATTCCCAGTAAAATAAATGTGTAAGTATT 2517
consensus_9992#1      ------------------------------------------------------------
                                                                                  

consensus_9992#0      CATCATGGTTAGGGTCGTATGAAAAGAACTGTTCTCGATTTTATACGAATTTCTGTTCCA 2577
consensus_9992#1      ------------------------------------------------------------
                                                                                  

consensus_9992#0      TCGTATTTTCAAAAAAA 2594
consensus_9992#1      -----------------
                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)