These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10003#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1008 fasta sequence [TGTCCTGGGAAGGTATTGGTTACTGAATGCGGCTATTTAGAAAGACAAGGACATATCGGTTATTTTTACAGTATTTCATTAGACATATGCAAGACGAACAAGCAGTCAGAAGGATATTTGAAACAGTAGACAGGAACAGGGACGGAAATATTGATCACCAAGAGCTACAGCTGGCACTATCAAATGGTATAGGTACTCCGTTCAACTCTAGAACTGTCCAGCTGATGATTT-CAATGTTTGACCAAGACAGGAATGGAACCATTGATTTGAGAGAGTTCGTCTATTTATTTAAATATGTTCAGGATTGGCAACGGTGTTTTCGTCAATATGATCAGGACAGATCTGGATTAATCGATGCTCGAGAGTTCCAAAGTGCATTGTCTTGTTTTGGTTATCGACTCTCTCCTTCTTTTATAAAAATGATGATCAGTCGTTTCGACCGTAATAAACAAGGA-CAAATCGCCTTCGATGACTTTATTTATGCTTGTGTATGTCTCCAAATTCCCACGAACTGCTTTAGACGGTATGATTTAAATAGGAATGGATATGCACAATTCAGTTTTGAAGAATTTTTGTCTTCTGCTATGTCTATAATCATTTAATAAATAAAAACCAATTGGTTACTGTACAGAAGAAAAATACAGATGACCATTATCAATAACTTCATTTCTGCATTGTTTACTCGACCTTCCTTCCTTCCTTTATT-GAATAATTAAATAAATAACAAAAAATTGAACAAAGGAGAGAGATAAGCATAATTATAATTTCTTCAGTAATCTAAATTAACTTTCATTTATTGCATGAG-AAGG-AAAAAAAGATGATACTTTACTATTTTGTTGCTTTCCACTGAGAAATTCCATA-NNAC-ACTCTCCTACACTTACTCAATTGTTNTATTATGTAAGCTTTTGACTAT-AACACTATGAAACAATTTGTAG-TCTATTTTTAAAATGC-TCGA-TNTGGATACTTTNTTNG-TATTTTNGCTGNTNNGTTTTGTTTG-AAAGACAAAAT] [-] EMBL CD190276 [TGTCCTGGGAAGGTATTGGTTACTGAATGCGGCTATTTAGAAAGACAAGGACATATCGGTTATTTTTACAGTATTTCATTAGACATATGCAAGACGAACAAGCAGTCAGAAGGATATTTGAAACAGTAGACAGGAACAGGGACGGAAATATTGATCACCAAGAGCTACAGCTGGCACTATCAAATGGTATAGGTACTCCGTTCAACTCTAGAACTGTCCAGCTGATGATTTGCAATGTTTGAtgcag ] [+] EMBL CD189654 [ CGGCTATTTAGAAAGACAAGGACATATCGGTTATTTTTACAGTATTTCATTAGACATATGCAAGACGAACAAGCAGTCAGAAGGATATTTGAAACAGTAGACAGGAACAGGGACGGAAATATTGATCACCAAGAGCTACAGCTGGCACTATCAAATGGTATAGGTACTCCGTTCAACTCTAGAACTGTCCAGCTGATGATTT CAATGTTTGACCAAGACAGGAATGGAACCATTGATTTGAGAGAGTTCGTCTATTTATTTAAATATGTTCAGGATTGGCAACGGTGTTTTt ] [+] EMBL CD189655 [ CGGCTATTTAGAAAGACAAGGACATATCGGTTATTTTTACAGTATTTCATTAGACATATGCAAGACGAACAAGCAGTCAGAAGGATATTTGAAACAGTAGACAGGAACAGGGACGGAAATATTGATCACCAAGAGCTACAGCTGGCACTATCAAATGGTATAGGTACTCCGTTCAACTCTAGAACTGTCCAGCTGATGATTT CAATGTTTGACCAAGACAGGAATGGAACCATTGATTTGAGAGAGTTCGTCTATTTATTTAAATATGTTCAGGATTGGCAACGGTGTTTTt ] [+] EMBL CD082086 [ aggaccATTTTTACAGTATTTCATTAGACATATGCATTACGAACAAGCAGTCAGACGGATATTTGAAACAGTAGACAGGAACAGGGACGGAAATATTGATCACCAAGAGCTACAGCTGGCACTATCAAATGGTATAGGTACTCCGTTCAACTCTAGAACTGTCCAGCTGATGATTT CAATGTTTGACCAAGACAGGAATGGAACCATTGATTTGAGAGAGTTCGTCTATTTATTTAAATATGTTCAGGATTGGCAACGGTGTTTTCGTCAATATGATCAGGACAGATCTGGATTAATCGATGCTCGAGAGTTCCAAAGTGCATTGTCTTGTTTTGGTTATCGACTCTCTCCTTCTTTTATAAAAATGATGATCAGTCGTTTCGACCGTAATAAACAAGGA CAAATCGCCTTCGATGACTTTATTTATGCTTGTGTATGTCTCCAAATTCCCACGAACTGCTTTAGACGGTATGATTTAAATAGGAATGGATATGCACAATTCAGTTTTGAAGAATTTTTGTCTTCTGCTATGTCTATAATCATTTAATAAATAAAAACCAATTGGTTACTGTACAGAAGAAAAATACAGATGACCATTATCAATAACTTCATTTCTGCATTGGNTACTCGACCTTNCTTNCTTNNCTTATTNNGATAGTAAANTAAAT ACANANATTTTGAC AAGGAGAGAGATAAGCATAATTATAATTTCTTCAGTAATCTAAATTAACTTTCATTTATTGCATGAG AAGG ANAAAAAGATGATACTTTACTATNNTGNTGC TTCCACTGAGGAA TNCATA NNAC ACTCT CTACAC TACTCAATGNTNNTA TATGT AGC TTTGACTAT AACACTA ] [+] EMBL CD179932 [ TCATTAGACATATGCAAGACGAACAAGCAGTCAGAAGGATATTTGAAACAGTAGACAGGAACAGGGACGGAAATATTGATCACCAAGAGCTACAGCTGGCACTATCAAATGGTATAGGTACTCCGTTCAACTCTAGAACTGTCCAGCTGATGATTT CAATGTTTGACCAAGACAGGAATGGAACCATTGATTTGAGAGAGTTCGTCTATTTATTTAAATATGTTCAGGATTGGCAACGGTGTTTTCGTCAATATGATCAGGACAGATCTGGATTAATCGATGCTCGAGAGTTCCAAAGTGCATTGTCTTGTTTTGGTTATCGACTCTCTCCTTCTTTTATAAAAATGATGATCAGTCGTTTCGACCG ] [+] EMBL SMAA8331 [ CAGAAGGATATTTGAAACAGTAGACAGGAACAGGGACGGAAATATTGATCACCAAGAGCTACAGCTGGCACTATCAAATGGTATAGGTACTCCGTTCAACTCTAGAACTGTCCAGCTGATGATTT CAATGTTTGACCAAGACAGGAATGGAACCATTGATTTGAGAGAGTTCGTCTATTTATTTAAATATGTTCAGGATTGGCAACGGTGTTTTCGTCAATATGATCAGGACAGATCTGGA ] [-] EMBL CD096922 [ ttgatcctCAGGAACAGGGACGGAAATATTGATCACCAAGAGCTACAGCTGGCACTATCAAATGGTATAGGTACTCCGTTCAACTCTAGAACTGTCCAGCTGATGATTT CAATGTTTGACCAAGACAGGAATGGAACCATTGATTTGAGAGAGTTCGTCTATTTATTTAAATATGTTCAGGATTGGCAACGGTGTTTTCGTCAATATGATCGGGACAGATCTGGATTAATCGATGCTCGAGAGTTCCAAAGTGCATTGTCTTGTTTTGGTTATCGACTCTCTCCTTCTTTTATAAAAATGATGATCAGTCGTTTCGACCGTAATAAACAAGGATCAA ] [+] EMBL CD082216 [ tccgaggccGATCACCAAGAGCTACAGCTGGCACTATCATTTGGTATAGGTACTCCGCCCAACTCTAGAACTGTCCAGCTGATGATTT CAATGTTTGACCAAGACAGGAATGGAACCATTGATTTGAGAGAGTTCGTCTATTTATTTAAATATGTTCAGGATTGGCAACGGTGTTTTCGTCAATATGATCAGGACAGATCTGGATTAATCGATGCTCGAGAGTTCCAAAGTGCATTGTCTTGTTTTGGTTATCGACTCTCTCCTTCTTTTATAAAAATGATGATCAGTCGTTTCGACCGTAATAAACAAGGA CAAATCGCCTTCGATGACTTTATTTATGCTTGTGTATGTCTCCAAATTCTCACGAACTGCTTTAGACGGTATGATTTAAATAGGAATGGATATGCACAATTCAGTTTTGAAGAATTTTTGTCTTCTGCTATGTCTATAATCATTTAATAAATAAAAACCAATTGGTTACTGTACAGAAGAAAAATACAGATGACCATTATCAATAACTTCATTTCTGCATTGTTTACTCGACCTTCCTTCCTTCCTTTATT GAATAATTAAATAAATAACAAAAAATTGAACAAAGGAGAGAGATAAGCATAATTATAATTTCTTCAGTAATCTAAATTAACTTTCATTTATTGCATGAG AAAG AAAAAAAGATGATACTTTACTATTTTGTTGCTTTCCACTGAGAAATTCCATANNNAC ACTCTNCTACACTTACTCAATTGTTNTATTATGTAAGCTTTTGACTAT AACACTATGAAACAATTTGTAG TCTATTTTTAAAATGC TCGA TNTGGATACTTTNTTNG TATTTTNGCTGNTNNGTTTTGTTTG AAAGACAA ] [-] EMBL CD075701 [ CAAGGA CAAATCGCCTTCGATGACTTTATTTATGCTTGTGTATGTCTCCAAATTCCCACGAACTGCTTTAGACGGTATGATTTAAATAGGAATGGATATGCCCAATTCAGTTTTGAAGAATTTTTGTCTTCTGCTATGTCTATAATCATTTAATAAATAAAAACCAATTGGTTTCTGTACAGAAGAAAAATACAGATGACCATTATCAATAACTTCATTTTTGCATTGTTTACTCGACCTTCCTTCCTTCCTTTATT GAATAAGTAAATAAATAACAAAAAATTGAACAAAGGAGAGAGATAAGCATAATTATAATTTTTTCAGTAATTTAAATTAACTTTCATTTATTGCATGAG AAGGAAAAAAAAGATGATACTTTACTATTTTGTTGCTTCCCCCTGAGAAATTCCATA AAACAACTTTCCTACACTTACTCAATTGTTTTATTATGTAAGCTTTTGACTATAAACCCTATGA ] [-] EMBL CD075828 [ ATCGCCTTCGATGACTTTATTTATGCTTGTGTATGTCTCCAAATTCTCACGAACTGCTTTAGACGGTATGATTTAAATAGGAATGGATATGCACAATTCAGTTTTGAAGAATTTTTGTCTTCTGCTATGTCTATAATCATTTAATAAATAAAAACCAATTGGTTACTGTACAGAAGAAAAATACAGATGACCATTATCAATAACTTCATTTCTGCATTGTTTACTCGACCTTCCTTCCTTCCTTTATT GAATAATTAAATAAATAACAAAAAATTGAACAAAGGAGAGAGATAAGCATAATTATAATTTCTTCAGTAATCTAAATTAACTTTCATTTATTGCATGAGAAAGA AAAAAAAGATGATACTTTACTATTTTGTTGCTTCCCACTGAGAAATTCCATA AAACAACTCTCCTACACTTACTCAATTGTTTTATTATGTAAGCTTTTGACTATAAACACTATG AACAATTTGTAGTTCTATTTTTTAATTGCTTCGATTTTGGATACTTTTTTTGTTATTTTTGCTGTTTGTTTTTGTTTGAAAAGACCCAAT] consensusID : consensus_10003#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 361 fasta sequence [AATATCGGTTATTTANACAGTATTTCATTAGACATATGCAAGACGAACAAGCAGTCAGAAGGATATTTGAAACAGTAGACAGGAACAGGGNACGGNATTATTGANCACCAAGAGCTACAGNTGGCACTATCAANTGGTATAGGTNCTCCCATCAACTCTAGAACTGTCCAGCTGATGATTTCAATGNNNGACCAAGACAGGAATGGNACCATTGANTNGNGAGAGTTCGTCTATTTATTTAANTNTGTCCAGGATTGGCAACGGTGTNTTCGTCANTATGATCAGGACAGTTCTGGATTAATCGATGCTCGAGAGTTCCAAAGTGCATTGTCTTGGGNGGGTTATCGCCTCTCTCCTTCTT] [+] EMBL SM6901 [AATATCGGTTATTTANACAGTATTTCATTAGACATATGCAAGACGAACAAGCAGTCAGAAGGATATTTGAAACAGTAGACAGGAACAGGGNACGGNATTATTGANCACCAAGAGCTACAGNTGGCACTATCAANTGGTATAGGTNCTCCCATCAACTCTAGAACTGTCCAGCTGATGATTTCAATGNNNGACCAAGACAGGAATGGNACCATTGANTNGNGAGAGTTCGTCTATTTATTTAANTNTGTCCAGGATTGGCAACGGTGTNTTCGTCANTATGATCAGGACAGTTCTGGATTAATCGATGCTCGAGAGTTCCAAAGTGCATTGTCTTGGGNGGGTTATCGCCTCTCTCCTTCTT] consensusID : consensus_10003#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 240 fasta sequence [ACTTTACTATTTTGTTGCTTCCCACTGAGAAATTCCATAAAACAACTCTCCTACACTTACTCAATTGTTTTATTATGTAAGCTTTTGACTATAAACACTATGAACAATTTGTAGTTCTATTTTTTAATTGCTTCGATTTTGGATACTTTTTTTGTTATTTTTGCTGTTTGTTTTTGTTTGAAAAGACCAATATTGTTTTTACTTTATTGTCTTTTTGTTTACTTTGTGAATATCCAAAAT] [+] EMBL SMAA43879 [ACTTTACTATTTTGTTGCTTCCCACTGAGAAATTCCATAAAACAACTCTCCTACACTTACTCAATTGTTTTATTATGTAAGCTTTTGACTATAAACACTATGAACAATTTGTAGTTCTATTTTTTAATTGCTTCGATTTTGGATACTTTTTTTGTTATTTTTGCTGTTTGTTTTTGTTTGAAAAGACCAATATTGTTTTTACTTTATTGTCTTTTTGTTTACTTTGTGAATATCCAAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10003#0 TGTCCTGGGAAGGTATTGGTTACTGAATGCGGCTATTTAGAAAGACAAGGACATATCGGT 60 consensus_10003#1 ---------------------------------------------------AATATCGGT 9 consensus_10003#2 ------------------------------------------------------------ consensus_10003#0 TATTTTTACAGTATTTCATTAGACATATGCAAGACGAACAAGCAGTCAGAAGGATATTTG 120 consensus_10003#1 TATTTANACAGTATTTCATTAGACATATGCAAGACGAACAAGCAGTCAGAAGGATATTTG 69 consensus_10003#2 ------------------------------------------------------------ consensus_10003#0 AAACAGTAGACAGGAACAGGGA-CGGAAATATTGATCACCAAGAGCTACAGCTGGCACTA 179 consensus_10003#1 AAACAGTAGACAGGAACAGGGNACGGNATTATTGANCACCAAGAGCTACAGNTGGCACTA 129 consensus_10003#2 -----------------------------------ACTTTA----CTATT-TTGTTGCTT 20 * * *** ** ** consensus_10003#0 TCAAATGGTATAGGTACTCCGTTCAACTCTAGAACTGTCCAGCTGATGATTTCAATGTTT 239 consensus_10003#1 TCAANTGGTATAGGTNCTCCCATCAACTCTAGAACTGTCCAGCTGATGATTTCAATGNNN 189 consensus_10003#2 CCCACTGAGA-AATTCCATAAAACAACTCTCCTAC-ACTTACTCAATTGTTTTATTATGT 78 * * ** * * * * ******* ** * ** *** * * consensus_10003#0 GACCAAGACAGGAATGGAACCATTGATTTGAGAGAGTTCGTCTATTTATTTAAATATGTT 299 consensus_10003#1 GACCAAGACAGGAATGGNACCATTGANTNGNGAGAGTTCGTCTATTTATTTAANTNTGTC 249 consensus_10003#2 AAGCTTTTGACTATAAACACTATGAACAATTTGTAGTTC---TATTT-TTTAATTGCTTC 134 * * * * ** ** * ***** ***** ***** * * consensus_10003#0 CAGGATTGGCAACGGTGTTTTCGTCAATATGATCAGGACAGATCTGGATTAATCGATGCT 359 consensus_10003#1 CAGGATTGGCAACGGTGTNTTCGTCANTATGATCAGGACAGTTCTGGATTAATCGATGCT 309 consensus_10003#2 ---GATTTTGGATACTTTTTTTGTTATTTTTGCT--GTTTGTTTTTGTTTGA--AAAGAC 187 **** * * * ** ** * * * * * * * * ** * * * consensus_10003#0 CGAGAGT-TCCAAAGTGCATTGTCTTGTTTTGGTTATCGACTCTCTCCTTCTTTTATAAA 418 consensus_10003#1 CGAGAGT-TCCAAAGTGCATTGTCTTGGGNGGGTTATCGCCTCTCTCCTTCTT------- 361 consensus_10003#2 CAATATTGTTTTTACTTTATTGTCTTTTTGTTTACTTTGTGAATATCCAAAAT------- 240 * * * * * * * ******** * * * *** * consensus_10003#0 AATGATGATCAGTCGTTTCGACCGTAATAAACAAGGACAAATCGCCTTCGATGACTTTAT 478 consensus_10003#1 ------------------------------------------------------------ consensus_10003#2 ------------------------------------------------------------ consensus_10003#0 TTATGCTTGTGTATGTCTCCAAATTCCCACGAACTGCTTTAGACGGTATGATTTAAATAG 538 consensus_10003#1 ------------------------------------------------------------ consensus_10003#2 ------------------------------------------------------------ consensus_10003#0 GAATGGATATGCACAATTCAGTTTTGAAGAATTTTTGTCTTCTGCTATGTCTATAATCAT 598 consensus_10003#1 ------------------------------------------------------------ consensus_10003#2 ------------------------------------------------------------ consensus_10003#0 TTAATAAATAAAAACCAATTGGTTACTGTACAGAAGAAAAATACAGATGACCATTATCAA 658 consensus_10003#1 ------------------------------------------------------------ consensus_10003#2 ------------------------------------------------------------ consensus_10003#0 TAACTTCATTTCTGCATTGTTTACTCGACCTTCCTTCCTTCCTTTATTGAATAATTAAAT 718 consensus_10003#1 ------------------------------------------------------------ consensus_10003#2 ------------------------------------------------------------ consensus_10003#0 AAATAACAAAAAATTGAACAAAGGAGAGAGATAAGCATAATTATAATTTCTTCAGTAATC 778 consensus_10003#1 ------------------------------------------------------------ consensus_10003#2 ------------------------------------------------------------ consensus_10003#0 TAAATTAACTTTCATTTATTGCATGAGAAGGAAAAAAAGATGATACTTTACTATTTTGTT 838 consensus_10003#1 ------------------------------------------------------------ consensus_10003#2 ------------------------------------------------------------ consensus_10003#0 GCTTTCCACTGAGAAATTCCATANNACACTCTCCTACACTTACTCAATTGTTNTATTATG 898 consensus_10003#1 ------------------------------------------------------------ consensus_10003#2 ------------------------------------------------------------ consensus_10003#0 TAAGCTTTTGACTATAACACTATGAAACAATTTGTAGTCTATTTTTAAAATGCTCGATNT 958 consensus_10003#1 ------------------------------------------------------------ consensus_10003#2 ------------------------------------------------------------ consensus_10003#0 GGATACTTTNTTNGTATTTTNGCTGNTNNGTTTTGTTTGAAAGACAAAAT 1008 consensus_10003#1 -------------------------------------------------- consensus_10003#2 -------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||