cluster # 10012

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Schistosoma mansoni
cluster # 10012 cluster # 10012 Sequences # 13 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10012#0 length = 446 sequences # 12

consensus_10012#1 length = 110 sequences # 1

consensusID : consensus_10012#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 446
fasta sequence

                              [TTTGTTTTTTTGTTTTTTTTTTAGTTTTTAAACCAGTTTATTAGGATATAAATTTACTTCAAAACAGGTTAGACCAAACGTATGTTCTTCGCATGAGCAACGTTCATGCTTTGCAACATTTCTCGTGCTACGGGGTCAATTTCAAGGGCCATAGAATCAAATATTGAAACCTCCGGCTGGTAGTTGTCTCTTCGTTCTCTTTCTTCTTCCTGAAGCTTAATACTAATACCACGCACAGGGCCAGCTTCGAAACGCTTCATCAAATGAGTCACATAACCTGCGATCATGTTT-CGCAATCTTTTTGACCCTATGCATGCGATGTCTTG-ACAAA-CGAATTTGTTTGTATGGAAGTCTCGGGTCAGTTTGGAGTAAAACCTTTCGATTATATACCTCGAAGCTTTCTTCACTGTCTTTGTTCGGACTCGACCCCGCGTCCATCACAATAC]

[-] EMBL CD134491             [TTTGTTTTTTTGTTTTTTTTTTAGTTTTTAAACCAGTTTATTAGGATATAAATTTACTTCAAAACAGGTTAGACCAAACGTATGTTCTTCGCATGAGCAACGTTCATGCTTTGCAACATTTCTTGTGCT CGGc                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL AI820461             [                               ACCAGTTTATTTGGGTATAAATTTACTTCCAAACAGGTTAGACCAAACGTATGTTCTTCGCATGAGCAACGTTCATGCTTTGCAACATTTCTCGTGCTACGGGGTCAATTTCAAGGGCCATAGAATCAAATATTGAAA CTCCGGCTGGTAGTTGTCTCTTCGTTCTCTTTCTTCTTCCTGAAGCTTAATACTAATACCACGCACAGGGCCAGCTTCGAAACGCTTCATCAAATGAGTCAC                                                                                                                                                                                 ]
[-] EMBL AI740271             [                                       ATTAGGATATAAATTTACTTCAAAACAGGTTAGACCAAACGTATGTTCTTCGCATGAGCAACGTTCATGCTTTGCAACATTTCTCGTGCTACGGGGTCAATTTCAAGGGCCATAGAATCAAATATTGAAACCTCCGGCTGGTAGTTGTCTCTTCGTTCTCTTTCTTCTTCCTGAATTTTAATACTAATACCACGCACAGGGCCAGCTTCGAAACGCTTCATCAAATGAGTCAC                                                                                                                                                                                 ]
[-] EMBL SMAA25727            [                                                                                                                                  CGGGGTCAATTTCAAGGGCCATAGAATCAAATATTGAAACCTCCGGCTGGTAGTTGTCTCCTCGTTCTCTTTCTTCTTCCTGAAGCTTAATACTAATACCACGCACAGGGCCAGCTTCGAAACGCTTCATCAAATGAGTCACATAACCTGCGATCATGTTTGCGCAATCTTTTTGACCCTATGCATGCGATGTCTTGNACAAAGCGAATTTGTTTGTATGGAAGTCTCGGGTCAGTTTGGAGTAAANCCTTTCGATTATATACCTCGAAGCTGTCTTCACTGTCTTTGTTCGGACTCGACCCatgacc           ]
[-] EMBL BG931444             [                                                                                                                                 tgaGGGTCAATTTCAAGGGCCATAGAATCAAATATTGAAACCTCCGGCTGGTAGTTGTCTCTTCGTTCTCTTTCTTCTTCCTGAAGCTTAATACTAATACCACGCACAGGGCCAGCTTCGAAACGCTTCATCAAATGAGTCACATAACCTGCGATCATGTTT CGCAATCTTTTTGACCCTATGCATGCGATGTCTTG ACAAA CGAATTTGTTTGTATGGAAGTCTCGGGTCAGTTTGGAGTAAAACCTTTCGATTATATACCTCGAAGCTTTCTTCACTGTCTTTGTTCGGACTCGAa                   ]
[+] EMBL BG931284             [                                                                                                                                      GTCAATTTCAAGGGCCATAGAATCAAATATTGAAACCTCCGGCTGGTAGTTGTCTCTTCGTTCTCTTTCTTCTTCCTGAAGCTTAATACTAATACCACGCACAGGGCCAGCTTCGAAACGCTTCATCAAATGAGTCACATAACCTGCGATCATGTTT CGCAATCTTTTTGACCCTATGCATGCGATGTCTTG ACAAA CGAATTTGTTTGTATGGAAGTCTCGGGTCAGTTTGGAGTAAAACCTTTCGATTATATACCTCGAAGCTTTCTTCACTGTCTTTGTTCGGACTCGA                    ]
[+] EMBL BG931869             [                                                                                                                                      GTCAATTTCAAGGGCCATAGAATCAAATATTGAAACCTCCGGCTGGTAGTTGTCTCTTCGTTCTCTTTCTTCTTCCTGAAGCTTAATACTAATACCACGCACAGGGCCAGCTTCGAAACGCTTCATCAAATGAGTCACATAACCTGCGATCATGTTT CGCAATCTTTTTGACCCTATGCATGCGATGTCTTG ACAAA CGAATTTGTTTGTATGGAAGTCTCGGGTCAGTTTGGAGTAAAACCTTTCGATTATATACCTCGAAGCTTTCTTCACTGCCTTTGTTCGGACTCGAGCACGCGTCCATC       ]
[+] EMBL BG930365             [                                                                                                                                      aTCAATTTCAAGGGCCATAGAATCAAATATTGAAACCTCCGGCTGGTAGTTGTCTCTTCGTTCTCTTTCTTCTTCCTGAAGCTTAATACTAATACCACGCACAGGGCCAGCTTCGAAACGCTTCATCAAATGAGTCACATAACCTGCGATCATGTTT CGCAATCTTTTTGACCCTATGCATGCGATGTCTTG ACAAA CGAATTTGTTTGTATGGAAGTCTCGGGTCAGTTTGGAGTAAAACCTTTCGATTATATACCTCGAAGCTTTCTTCACTGTCTTTGTTCGGACTCGA                    ]
[+] EMBL BG930982             [                                                                                                                                      cTCAATTTCAAGGGCCATAGAATCAAATATTGAAACCTCCGGCTGGTAGTTGTCTCTTCGTTCTCTTTCTTCTTCCTGAAGCTTAATACTAATACCACGCACAGGGCCAGCTTCGAAACGCTTCATCAAATGAGTCACATAACCTGCGATCATGTTT CGCAATCTTTTTGACCCTATGCATGCGATGTCTTG ACAAA CGAATTTGTTTGTATGGAAGTCTCGGGTCAGTTTGGAGTAAAACCTTTCGATTATATACCTCGAAGCTTTCTTCACTGTCTTTGTTCGGACTCGACCCCCCGTCCATCACAATAC]
[+] EMBL BG930663             [                                                                                                                                      cTCAATTTCAAGGGCCATAGAATCAAATATTGAAACCTCCGGCTGGTAGTTGTCTCTTCGTTCTCTTTCTTCTTCCTGAAGCTTAATACTAATACCACGCACAGGGCCAGCTTCGAAACGCTTCATCAAATGAGTCACATAACCTGCGATCATGTTT CGCAATCTTTTTGACCCTATGCATGCGATGTCTTG ACAAA CGAATTTGCTTGTATGGAAGTCTTGGGTCAGTTTGGAGTAAAACCTTTCGATTATATACCTCGAAGCTTTCTTCACTGTCTTTGTTCGGACTCGA                    ]
[+] EMBL BG930161             [                                                                                                                                      tTCAATTTCAAGGGCCATAGAATCAAATATTGAAACCTCCGGCTGGTAGTTGTCTCTTCGTTCTCTTTCTTCTTCCTGAAGCTTAATACTAATACCACGCACAGGGCCAGCTTCGAAACGCTTCATCAAATGAGTCACATAACCTGCGATCATGTTT CGCAATCTTTTTGACCCTATGCATGCGATGTCTTG ACAAA CGAATTTGTTTGTATGGAAGTCTCGGGTCAGTTTGGAGTAAAACCTTTCGATTATATACCTCGAAGCTTTCTTCACTGTCTTTGTTCGGACTCGA                    ]
[+] EMBL CD136271             [                                                                                                                                                                                           CTCTTCGTTCTCTTTCTTCTTCCTGAAGCTTAATACTAATACCACGCACAGGGCCAGCTTCGAAACGCTTCATCAAATGAGTCACATAACCTGCGATCATGTTT CGCAATCTTTTTGACCCTATGCATGCGATGTCTTG ACAAA CGAATT                                                                                                             ]




>consensus_10012#0
TTTGTTTTTTTGTTTTTTTTTTAGTTTTTAAACCAGTTTATTAGGATATAAATTTACTTC
AAAACAGGTTAGACCAAACGTATGTTCTTCGCATGAGCAACGTTCATGCTTTGCAACATT
TCTCGTGCTACGGGGTCAATTTCAAGGGCCATAGAATCAAATATTGAAACCTCCGGCTGG
TAGTTGTCTCTTCGTTCTCTTTCTTCTTCCTGAAGCTTAATACTAATACCACGCACAGGG
CCAGCTTCGAAACGCTTCATCAAATGAGTCACATAACCTGCGATCATGTTTCGCAATCTT
TTTGACCCTATGCATGCGATGTCTTGACAAACGAATTTGTTTGTATGGAAGTCTCGGGTC
AGTTTGGAGTAAAACCTTTCGATTATATACCTCGAAGCTTTCTTCACTGTCTTTGTTCGG
ACTCGACCCCGCGTCCATCACAATAC

consensusID : consensus_10012#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 110
fasta sequence

                              [AAAACTGAGTGGTCATGGGTCGAGTCCGAACAAAGACAGTGAAGAAAGCTTCGAGGTATATAATCGGAAAGGTTTACTTCAAACTTGACCCGAGAGAGTCCAATACCAAC]

[+] EMBL SM58066              [AAAACTGAGTGGTCATGGGTCGAGTCCGAACAAAGACAGTGAAGAAAGCTTCGAGGTATATAATCGGAAAGGTTTACTTCAAACTTGACCCGAGAGAGTCCAATACCAAC]




>consensus_10012#1
AAAACTGAGTGGTCATGGGTCGAGTCCGAACAAAGACAGTGAAGAAAGCTTCGAGGTATA
TAATCGGAAAGGTTTACTTCAAACTTGACCCGAGAGAGTCCAATACCAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10012#0      TTTGTTTTTTTGTTTTTTTTTTAGTTTTTAAACCAGTTTATTAGGATATAAATTTACTTC 60
consensus_10012#1      ------------------------------------------------------------
                                                                                   

consensus_10012#0      AAAACAGGTTAGACCAAACGTATGTTCTTCGCATGAGCAACGTTCATGCTTTGCAACATT 120
consensus_10012#1      ------------------------------------------------------------
                                                                                   

consensus_10012#0      TCTCGTGCTACGGGGTCAATTTCAAGGGCCATAGAATCAAATATTGAAACCTCCGGCTGG 180
consensus_10012#1      ------------------------------------------------------------
                                                                                   

consensus_10012#0      TAGTTGTCTCTTCGTTCTCTTTCTTCTTCCTGAAGCTTAATACTAATACCACGCACAGGG 240
consensus_10012#1      ------------------------------------------------------------
                                                                                   

consensus_10012#0      CCAGCTTCGAAACGCTTCATCAAATGAGTCACATAACCTGCGATCATGTTTCGCAATCTT 300
consensus_10012#1      ------------------------------------------------------------
                                                                                   

consensus_10012#0      TTTGACCCTATGCATGCGATGTCTTGACAAACGAATTTGTTTGTATGGAAGTCTCGGGTC 360
consensus_10012#1      --------------------------AAAACTGAGTGGTCATGGGTCGA-GTCCGAACAA 33
                                                 * **  ** *     **  * ** ***       

consensus_10012#0      AGTTTGGAGTAAAACCTTTCGATTATATACCTCGAAGCTTTCTTCACTGTCTTTGTTCGG 420
consensus_10012#1      AGACAGTGAAGAAAGCTTCGAGGTATATAATCGGAAAGGTTTACTTCAAACTTGACCCGA 93
                       **   *     *** ***     ******    ***   **     *   ***    ** 

consensus_10012#0      ACTCGACCCCGCGTCCATCACAATAC 446
consensus_10012#1      G--AGAGTCCAATACCAAC------- 110
                           **  **    *** *