cluster # 10019

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 10019 cluster # 10019 Sequences # 13 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10019#0 length = 1047 sequences # 12

consensus_10019#1 length = 273 sequences # 1

consensusID : consensus_10019#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 1047
fasta sequence

                              [TGTAGTATCCAGTTATTTACAATCTTCTGATTTTCCGGATAT-ATCTATGCTTGTGGTGGCTCAACAGGCTCTAAAGATTTAGCTTCTGTAGATAAACTGACATGTGAGGCACTGGGATCTTGGCTCATCAATCATGAAGTGGTAACCAAAAGCCATCATGATAACCTTGACGATCACGTGTATACAAATGGCTCTCGGAAAAGTTCTGATTTCCGTATACGAACAGATTCAATAGCACATAATCATGCATCTTCAAATGGTTCTGGTCTATCAAGTGTTACATTTTGGCAGACGATAAGGAGTTTACATGAAGCTCGAACTAATCCAGTTGGTGTAGATCTTAGTGGTCTTCAACAAGGACCGCTTATCACAAGTACAAACGGATCAATCCTTGTTGCTGGCGGAGTATCAGGCGCACAGTTTCTATCTTCTGTTGAAGCCTACATTCCAGATAGAGATGAATGGGTTTATATGCCGTCCATGTTACAGGGTCGTCGTGAAGCATGTGCTAATGTTTTGACGTCACGAAATCTAATCGTTGTTATCGGTGGAGTTGTCAATACAAACACTACATATACTACTAGTCAAAATGTAACTGTTGAAGCATTGGATCCTCGTTGTGACACTTGGTTTTATATTCCTAATACACCAGGCAATTCTTTTGGACAAATTCGTGGTGCCAGTTTAACATATTGTCCAAATTCTAAAGATAATTTACTATTAGTTGGTGGATATAATGGTCAAGATACCTTAGATACTACATGGATATTTGATCCTGTCGCTTGGAAATGGCGTTCAAGGCCAAA-TTAATATCTGCTCGTTCCAGTTGTTGTACAACATTAACATCAGATCAACGTTATAATTTAGTATTTTGTTGTTATAATCCATTGAAATTT-ATACTGGATTTTCGGATCCAATTG-AATGATTTTCTCAACAAAAAAA-AAAATTATTTTTCTAACATCTTATTATTCTGGAAGGCTTTTTTATGTTATTAATCCAATTTTGGTTATTTTCCTTACCTTCTTAATCTCATTGAATGGCGATACC]

[+] EMBL CD111416             [TGTAGTATCCAGTTATTTACAATCTTCTGATTTTCCGGATATAATCTATGCTTGTGGTGGCTCAACAGGCTCTAAAGATTTAGCTTCTGTAGATAAACTGACATGTGAGGCACTGGGATCTTGGCTCATCAATCATGAAGTGGTAACCAACAGCCATCATGATAACCTTGACGATCACGTGTATTCGAATGGCTCTCGGAAAAGTTCTGATTTCCGTATACGAACAGATTCAATAGCACATAATCATGCATCTTCAAATGGTTCTGGTCTATCAAGTGTTACATTTGGGCAGACGATAAGGAGTTTACATGAAGCTCGAACTAATCCAGTTGGTGTAGATCTTAGTGGTCTTCAACAAGGACCGCTTATCACGAGTACAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD111580             [TGTAGTATCCAGTTATTTACAATCTTCTGATTTTCCGGATAT ATCTATGCTTGTGGTGGCTCAACAGGCTCTAAAGATTTAGCTTCTGTAGATAAACTGACATGTGAGGCACTGGGATCTTGGCTCATCAATCATGAAGTGGTAACCAAAAGCCATCATGATAACCTTGACGATCACGTGTATACAAATGGCTCTCGGAAAAGTTCTGATTTCCGTATACGAACAGATTCAATAGCACATAATCATGCATCTTCAAATGGTTCTGGTCTATCAAGTGTTACATTTTGGCAGACGATAAGGAGTTTACATGAAGCTCGAACTAATCCAGTTGGTGTAGATCTTAGTGGTCTTCAACAAGGACCGCTTATCACAAGTACAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD129754             [                                               ATGCTTGTGGTGGCTCAACAGGCTCTAAAGATTTAGTTTCTGTAGATAAACTGACATGTGAGGCACTGGGATCTTGGCTCATCAATCATGAAGTGGTAACCAAAAGCCATCATGATAACCTTGACGATCACGTGTATACAAATGGCTCTCGGAAAAGTTCTGATTTCCGTATACGAACAGATTCAATAGCACATAGTCATGCATCTTCAAATAGTTCTGGTCTATCAAGTGTTACATTTTGGCAGACGATAAGGAGTTTACATGAAGCTCGAACTAATCCAGTTGGTGTAGATCTTAGTGGTCTTCAACAAGGACCGCTTATCACAAGTACAAACGGATCAATCCTTGTTGCTGGCGGAGTATCAGGCGCACAGTTTCTATCTTCTGTTGAAGCCTACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD083471             [                                                  CTTGTGGTGGCTCAACAGGCTCTAAAGATTTAGCTTCTGTAGAT AACTGACATGTGAGGCACTGGGATCTTGGCTCATCAATCATGAAGTGGTAACCAAAAGCCATCATGATAACCTTGACGATCACGTGTATACAAATGGCTCTCGGAAAAGTTCTGATTTCCGTATACGAACAGATTCAATAGCACATAATCATGCATCTTCAAATGGTTCTGGTCTATCAAGTGTTACATTTTGGCAGACGATAAGGAGTTTACATGAAGCTCGAACTAATCCAGTTGGTGTAGATCTTAGTGGTCTTCAACAAGGACCGCTTATCACAAGTACAAACGGATCAATCCTTGTTGCTGGCGGAGTATCAGGCGCACAGTTTCTATCTTCTGTTGAAGCCTACATTCCAGATTGAGATGAATGGGTTTATATGCCGTCCATGTTACAGGGTCGTCGTGAAGCATGTGCTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD133386             [                                                                        TAAAGATTTAGCTTCTGTAGATAAACTGACATGTGAGGCACTGGGATCTTGGCTCATCAATCATGAAGTGGTAACCAAAAGCCATCATGATAACCTTGACGATCACGTGTATACAAATGGCTCTCGGAAAAGTTCTGATTTCCGTATACGAACAGATTCAATAGCACATAATCATGCATCTTCAAATGGTTCTGGTCTATCAAGTGTTACATTTTGGCAGACGATAAGGAGTTTACATGAAGCTCGAACTAATCCAGTTGGTGTAGATCTTAGTGGTCTTCAACAAGGACCGCTTATCACAAGTACAAACGGATCAATCCTTGTTGCTGGCGGAGTATCAGGCGCACAGTTTCTATCTTCTGTTGAAGCCTACATTCCAGATAGAGATGAATGGGTTTATATGCCGTCCATGTTACAGGGTCGTCGTGAAGCATGTGCTAATGTTTTGACGTCACGAAATCTAATCGTTGTTATCGGTGGAGTTGTCAATACAAACACTACATATACTACTAGTCAAAATGTAACTGTTGAAGCATTGGATCCTCGTTGTGACACTTGGTTTTATATT                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD183298             [                                                                                                                                              GTAACCAAAAGCCATCATGATAACCTTGACGATCACGTGTATACAAATGGCTCTCGGAAAAGTTCTGATTTCCGTATACGAACAGATTCAATAGCACATAATCATGCATCTTCAAATGGTTCTGGTCTATCAAGTGTTACATTTTGGCAGACGATAAGGAGTTTACATGAAGCTCGAACTAATCCAGTTGGTGTAGATCTTAGTGGTCTTCAACAAGGACCGCTTATCACAAGTACAAACGGATCAATCCTTGTTGCTGGCGGAGTATCAGGCGCACAGTTTCTATCTTCTGTTGAAGCCTACATTCCAGATAGAGATGAATGGGTTTATATGCCGTCCATGTTACAGGGTCGTCGTGAAGCATGTGCTAATGTTTTGACGTCACGAAATCTAATCGTTGTTATCGGTGGAGTTGTCAATACAAACACTACATATACTACTAGTCAAAATGTAACTGTTGAAGCATTGGATCCTCGTTGTGACACTTGGTTTTATAT                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD183264             [                                                                                                                                                       AGCCATCATGATAACCTTGACGATCACGTGTATACAAATGGCTCTCGGAAAAGTTCTGATTTCCGTATACGAACAGATTCAATAGCACATAATCATGCATCTTCAAATGGTTCTGGTCTATCAAGTGTTACATTTTGGCAGACGATAAGGAGTTTACATGAAGCTCGAACTAATCCAGTTGGTGTAGATCTTAGTGGTCTTCAACAAGGACCGCTTATCACAAGTACAAACGGATCAATCCTTGTTGCTGGCGGAGTATCAGGCGCACAGTTTCTATCTTCTGTTGAAGCCTACATTCCAGATAGAGATGAATGGGTTTATATGCCGTCCATGTTACAGGGTCGTCGTGAAGCATGTGCTAATGTTTTGACGTCACGAAATCTAATCGTTGTTATCGGTGGAGTTGTCAATACAAACACTACATATACTACTAGTCAAAATGTAACTGTTGAAGCATTGGATCCTCGTTGTGACACTTGGTTTTATATTCCTAAT                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD155027             [                                                                                                                                                                                                              CTGATTTCCGTATACGAACAGATTCAATAGCACATAATCATGCATCTTCAAATGGTTCTGGTCTATCAAGTGTTACATTTTGGCAGACGATAAGGAGTTTACATGAAGCTCGAACTAATCCAGTTGGTGTAGATCTTAGTGGTCTTCAACAAGGACCGCTTATCACGAGTACAAACGGATCAATCCTTGTTGCTGGCGGAGTATCAGGCGCACAGTTTCTATCTTCTGTTGAAGCCTACATTCCAGATAGAGATGAATGGGTTTATATGCCGTCCATGTTACAGGGTCGTCGTGAAGCATGTGCTAATGTTTTGACGTCACGAAATCTAATCGTTGTTATCGGTGGAGTTGTCAATACAAACACTACATATACTACTAGTCAAAATGTAACTGTTGAAGCATTGGATCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD178152             [                                                                                                                                                                                                                                                        CATCTTCAAATGGTTCTGGTCTATCAAGTGTTACATTTTGGCAGACGATAAGGAGTTTACATGAAGCTCGAACTAAACCAGTTGGTGTAAATCTTAGTGGTCTTCAACAAGGACCGCTTATCACAAGTACAAACAGATCAATCCTCGTTGCTGGCGGAGTATCAGGCGCACAGTTTCTATCTTCTGTTGAAGCCTACATTCCAGATAGAGATGAATGGGTTTATATGCCGTCCATGTTACAGGGTCGTCGTGAAGCATGTGCTAATGTTTTGACGTCACGAAATCTAATCGTTGTTATCGGTGGAGTTGTCAATACAAACACTACATATACTACTAGTCAAAATGTAACTGTTGAAGCATTGGATCCTCGTTGTGACACTTGGTTTTATATTCCTAATACACCAGGCAATTCTTTTGGACAAATTCGTGGTGCCAGTTTAACATATTGTCCAAATTCTAAAGATAATTTACTATTAGTTGGTGGATATAATGGTCAAGATACCTTAGATACTACATGGATATTTGATCCTGTCGCTTGGAAATGGCGTTCAAGGCCAAA TTAATATCTGCTCGTTCCAGTTGTTGTACAACATTAACATCAGATCAACGTTATAATTTAGTATTTTGTTGTTATAATCCATTGAAATTT ATACTGGATTTTCGGATCCAATTG AATGATTTTCTCAACAAAAAAA AAAATTATTTTTCTAACATCTTATTATTCTGGAAGGCTTTTTTATGTTATTAATCCAATTTTGGTTA                                      ]
[+] EMBL CD164364             [                                                                                                                                                                                                                                                                                      TTACATTNTGGCAGACGATAAGGAGTTTACATGAAGCTCGAACTAATCCAG TGGTGTAGATCTTAGTGGTCTTCAACAAGGACCGCTTATCACAGGTACAAACGGATCAATCCTTGTTGCTGGCGGAGTATCAGGCGCACAGTTTCTATCTTCTGTTGAAGCCTACATTCCAGATAGAGACGAATGGGTTTATATGCCGTCCATGTTACAGGGTCGTCGTGAAGCATGTGCTAATGTTTTGACGTCACGAAATCTAATCGTTGTTATCGGTGGAGTTGTCAATACAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD143187             [                                                                                                                                                                                                                                                                                                                                       AGTTGGTGTAGATCTTAGTGGTCTTCAACAAGGACCGCTTATCACAAGTACAAACGGATCAATCCTTGTTGCTGGCGGAGTATCAGGCGCACAGTTTCTATCTTCTGTTGAAGCCTACATTCCAGATAGAGATGAATGGGTTTATATGCCGTCCATGTTACAGGGTCGTCGTGAAGCATGTGCTAATGTTTTGACGTCACGAAATCTAATCGTTGTTATCGGTGGAGTTGTCAATACAAACACTACATATACTACTAGTCAAAATGTAACTGTTGAAGCATTGGATCCTCGTTGTGACACTTGGTTTTATATTCCTAATACACCAGGCAATTCTTTTGGACAAATTCGTGGTGCCAGTTTAACATATTGTCCAAATTCTAAAGATAATT                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD147850             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          aATATTCCTAATACACCAGGCAATTCTTTTGGACAAATTCGTGGTGCCAGTTTAACATATTGTCCAAATTCTAAAGATAATTTACTATTAGTTGGTGGATATAATGGTCAAGATACCTTAGATACTACATGGATATTTGATCCTGTCGCTTGGAAATGGCGTTCAGGGCCAAATTTAATATTTGCTCGTTCCAGTTGTTGTACAACATTAACATCAGATCAACGTTATAATTTAGTATTTGGTGGTTATAATCCATTGAAATTTAATACTGGATTTTCGGATACAATTGAAATGATTTTCTAAACAAAAAAAGATAATTATTTTTCTTACATTTTATTATTCTGTAAGTCTTTTTTATGTTATTAATTCATTTTTGTTTGTTTTCCTTACCTTCTTAATCTCATTGAATGGCGATACC]




>consensus_10019#0
TGTAGTATCCAGTTATTTACAATCTTCTGATTTTCCGGATATATCTATGCTTGTGGTGGC
TCAACAGGCTCTAAAGATTTAGCTTCTGTAGATAAACTGACATGTGAGGCACTGGGATCT
TGGCTCATCAATCATGAAGTGGTAACCAAAAGCCATCATGATAACCTTGACGATCACGTG
TATACAAATGGCTCTCGGAAAAGTTCTGATTTCCGTATACGAACAGATTCAATAGCACAT
AATCATGCATCTTCAAATGGTTCTGGTCTATCAAGTGTTACATTTTGGCAGACGATAAGG
AGTTTACATGAAGCTCGAACTAATCCAGTTGGTGTAGATCTTAGTGGTCTTCAACAAGGA
CCGCTTATCACAAGTACAAACGGATCAATCCTTGTTGCTGGCGGAGTATCAGGCGCACAG
TTTCTATCTTCTGTTGAAGCCTACATTCCAGATAGAGATGAATGGGTTTATATGCCGTCC
ATGTTACAGGGTCGTCGTGAAGCATGTGCTAATGTTTTGACGTCACGAAATCTAATCGTT
GTTATCGGTGGAGTTGTCAATACAAACACTACATATACTACTAGTCAAAATGTAACTGTT
GAAGCATTGGATCCTCGTTGTGACACTTGGTTTTATATTCCTAATACACCAGGCAATTCT
TTTGGACAAATTCGTGGTGCCAGTTTAACATATTGTCCAAATTCTAAAGATAATTTACTA
TTAGTTGGTGGATATAATGGTCAAGATACCTTAGATACTACATGGATATTTGATCCTGTC
GCTTGGAAATGGCGTTCAAGGCCAAATTAATATCTGCTCGTTCCAGTTGTTGTACAACAT
TAACATCAGATCAACGTTATAATTTAGTATTTTGTTGTTATAATCCATTGAAATTTATAC
TGGATTTTCGGATCCAATTGAATGATTTTCTCAACAAAAAAAAAAATTATTTTTCTAACA
TCTTATTATTCTGGAAGGCTTTTTTATGTTATTAATCCAATTTTGGTTATTTTCCTTACC
TTCTTAATCTCATTGAATGGCGATACC

consensusID : consensus_10019#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 273
fasta sequence

                              [GATACCTTAGATACTACATGGATATTTGATCCTGTCGCTTGGAAATGGCGCTCAGGGCCAAATTTAATATTTGCTCGTTCCAGTTGTTGTACAACATTAACATCAGATCAACGTTATAATTTAGTATTTGGTGGTTATAATCCATTGAAATTTAATACTGGATTTTCGGATACAATTGAAATGATTTTCTAAACAAAAAAAGATAATTATTTTTCTTACATTTTATTATTCTTAAATATTGAGTGAGCGACAATTAGAAGTTCAGTCCATTGA]

[+] EMBL CD154536             [GATACCTTAGATACTACATGGATATTTGATCCTGTCGCTTGGAAATGGCGCTCAGGGCCAAATTTAATATTTGCTCGTTCCAGTTGTTGTACAACATTAACATCAGATCAACGTTATAATTTAGTATTTGGTGGTTATAATCCATTGAAATTTAATACTGGATTTTCGGATACAATTGAAATGATTTTCTAAACAAAAAAAGATAATTATTTTTCTTACATTTTATTATTCTTAAATATTGAGTGAGCGACAATTAGAAGTTCAGTCCATTGA]




>consensus_10019#1
GATACCTTAGATACTACATGGATATTTGATCCTGTCGCTTGGAAATGGCGCTCAGGGCCA
AATTTAATATTTGCTCGTTCCAGTTGTTGTACAACATTAACATCAGATCAACGTTATAAT
TTAGTATTTGGTGGTTATAATCCATTGAAATTTAATACTGGATTTTCGGATACAATTGAA
ATGATTTTCTAAACAAAAAAAGATAATTATTTTTCTTACATTTTATTATTCTTAAATATT
GAGTGAGCGACAATTAGAAGTTCAGTCCATTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10019#0      TGTAGTATCCAGTTATTTACAATCTTCTGATTTTCCGGATATATCTATGCTTGTGGTGGC 60
consensus_10019#1      ------------------------------------------------------------
                                                                                   

consensus_10019#0      TCAACAGGCTCTAAAGATTTAGCTTCTGTAGATAAACTGACATGTGAGGCACTGGGATCT 120
consensus_10019#1      ------------------------------------------------------------
                                                                                   

consensus_10019#0      TGGCTCATCAATCATGAAGTGGTAACCAAAAGCCATCATGATAACCTTGACGATCACGTG 180
consensus_10019#1      ------------------------------------------------------------
                                                                                   

consensus_10019#0      TATACAAATGGCTCTCGGAAAAGTTCTGATTTCCGTATACGAACAGATTCAATAGCACAT 240
consensus_10019#1      ------------------------------------------------------------
                                                                                   

consensus_10019#0      AATCATGCATCTTCAAATGGTTCTGGTCTATCAAGTGTTACATTTTGGCAGACGATAAGG 300
consensus_10019#1      ------------------------------------------------------------
                                                                                   

consensus_10019#0      AGTTTACATGAAGCTCGAACTAATCCAGTTGGTGTAGATCTTAGTGGTCTTCAACAAGGA 360
consensus_10019#1      ------------------------------------------------------------
                                                                                   

consensus_10019#0      CCGCTTATCACAAGTACAAACGGATCAATCCTTGTTGCTGGCGGAGTATCAGGCGCACAG 420
consensus_10019#1      ------------------------------------------------------------
                                                                                   

consensus_10019#0      TTTCTATCTTCTGTTGAAGCCTACATTCCAGATAGAGATGAATGGGTTTATATGCCGTCC 480
consensus_10019#1      ------------------------------------------------------------
                                                                                   

consensus_10019#0      ATGTTACAGGGTCGTCGTGAAGCATGTGCTAATGTTTTGACGTCACGAAATCTAATCGTT 540
consensus_10019#1      ------------------------------------------------------------
                                                                                   

consensus_10019#0      GTTATCGGTGGAGTTGTCAATACAAACACTACATATACTACTAGTCAAAATGTAACTGTT 600
consensus_10019#1      ------------------------------------------------------------
                                                                                   

consensus_10019#0      GAAGCATTGGATCCTCGTTGTGACACTTGGTTTTATATTCCTAATACACCAGGCAATTCT 660
consensus_10019#1      ------------------------------------------------------------
                                                                                   

consensus_10019#0      TTTGGACAAATTCGTGGTGCCAGTTTAACATATTGTCCAAATTCTAAAGATAATTTACTA 720
consensus_10019#1      ------------------------------------------------------------
                                                                                   

consensus_10019#0      TTAGTTGGTGGATATAATGGTCAAGATACCTTAGATACTACATGGATATTTGATCCTGTC 780
consensus_10019#1      ------------------------GATACCTTAGATACTACATGGATATTTGATCCTGTC 36
                                               ************************************

consensus_10019#0      GCTTGGAAATGGCGTTCAAGGCCAAATT-AATATCTGCTCGTTCCAGTTGTTGTACAACA 839
consensus_10019#1      GCTTGGAAATGGCGCTCAGGGCCAAATTTAATATTTGCTCGTTCCAGTTGTTGTACAACA 96
                       ************** *** ********* ***** *************************

consensus_10019#0      TTAACATCAGATCAACGTTATAATTTAGTATTTTGTTGTTATAATCCATTGAAATTTA-T 898
consensus_10019#1      TTAACATCAGATCAACGTTATAATTTAGTATTTGGTGGTTATAATCCATTGAAATTTAAT 156
                       ********************************* ** ********************* *

consensus_10019#0      ACTGGATTTTCGGATCCAATTGAA-TGATTTTCTCAACAAAAAAAAA-AATTATTTTTCT 956
consensus_10019#1      ACTGGATTTTCGGATACAATTGAAATGATTTTCTAAACAAAAAAAGATAATTATTTTTCT 216
                       *************** ******** ********* ********** * ************

consensus_10019#0      AACATCTTATTATTCTGGAAGGCTTTTTTATGTTATTAATCCAATTTTGGTTATTTTCCT 1016
consensus_10019#1      TACATTTTATTATTCTTAAATA-TTGAGTGAGCGACAATTAGAAGTTCAGTCCATTGA-- 273
                        **** **********  **   **   *  *  *  * *  ** **  **   **    

consensus_10019#0      TACCTTCTTAATCTCATTGAATGGCGATACC 1047
consensus_10019#1      -------------------------------