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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10026#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1208 fasta sequence
[AGGAAAATGCTCCACACTATACCATTCAAGGAGTATTACATTTCTTGCAAACTGAATGGAATCGTCTGGAAATGCAACGCTCCCAATGGGAAGTCGAGCGAGCTGAATTGCAAGTTTCTTCAGGAAGTTGGTTATGCAGATGCTGTCCTCAGTGTACGCGAAGCACGTGTACGCCATTTATTGCTGTCAGCCGCAGGGTGGCCCAATGAACCTGATTCTTCTCTCACGACTGCAGATCCGAAGAATAAACACTATCATTGGGAATGTGATAAGCCAAAGTCGAAGCTCAATGATAATGCTGGCTATGATGCCAGCCTTCAAGATGAACTTGCGGAAGACGCTATAGCAAAAATAAATCAGGTTGTGCGCTCAGGCTCAGATTTTCTCACATCTGATGATTTGGGTTCTGGATTTGGTAGTGAGTTAAGTGACCAATCTACCGAACCGGATACAACCGGGAATTCTGGCACTGATAATTCGGAATCATTTGATAACGCAAGTTGGGTGAACAGATTTCGTCGAACAAGTGATGCANATAAACGCANATCACAGGGTCAAACAAATTACTTGCAACGAAATGAGTATTCCAAG-ATATCACTTCTAGTACCACAGTATCTTCGTTTCTGAACAGTTTTGGGGAAATAGGAAGTGCAGGACAATCGAAGAGATTTGGCCGTAAACATGCAGCCGATACAAATATTTTGGATTTAATCAATACATTGTCAGAAAAAGTTGATAATAATGATGATTTTCTATCAAATTCTGTATCGGATATTAATTCAACCGCTGCAGTATATCCTAGCAATGGTCAAACTCCTAATTCTGTCTCACCTAGCAACAATAAATTATCGAGTTCACCAAATAGTGGAACAAATTTATGGGGATCGGACTTACCAGATCCCAGTGTTGTAGATTCTACTGGTCAGGTTGGCATGAAAGGTCGTTTGGATTCTGTAAGAGAATCTAATCCGACAGATCCTCTTGGCCTTGGTGATCTGGCTAGTTTAACTGTAGCTAACGAGGCTGATTCAGGTTTAAATGGTGATG-TTTGTGACTC-AATTTACCT-GGAAAC-ATTATGAATCATCAGTGTTAGGTGGCTCTGTCAGTAGTAATGCTCAAGTAGACAGTGCAGCAAATATTTCATCGACTTACTCAACTGGTCGTCGACCGTGGGTCCCGAGATATACACTTCGCGGTCACTTTGATGG]
[+] EMBL CD201405 [AGGAAAATGCTCCACACTATACCATTCAAGGAGTATTACATTTCTTGCAAACTGAATGGAATCGTCTGGAAATGCAACGCTCCCAATGGGAAGTCGAGCGAGCTGAATTGCAAGTTTCTTCAGGAAGTTGGTTATGCAGATGCTGTCCTCAGTGTACGCGAAGCACGTGTACGCCATTTATTGCTGTCAGCCGCAGGGTGGCCCAATGAACCTGATTCTTCTCTCACGACTGCAGATCCGAAGAATAAACACTATCATTGGGAATGTGATAAGCCAAAGTCGAAGCTCAATGATAATGCTGGCTATGATGCCAGCCTTCAAGATGAACTTGCGGAAGACGCTATAGCAAAAATAAATCAGGTTGTGCGCTCAGGCTCAGATTTTCTCACATCTGATGATTTGGGTTCTGGATTTGGTAGTGAGTTAAGTGACCAATCTACCGAACCGGATACAACCGGGAATTCTGGCACTGATAATTCGGAATCATTTGATAACGCAAGTTGGGTGAACAGATTTCGTCGAACAAGTGATGCANATAAACGCANATCACAGGGTCAAACAAATTACTTGCAACGAAATGAGTATTCCAAG ATATCACTTCTAGTACCACAG ]
[+] EMBL CD201396 [AGGAAAATGCTCCACACTATACCATTCAAGGAGTATTACATTTCTTGCAAACTGAATGGAATCGTCTGGAAATGCAACGCTCCCAATGGGAAGTCGAGCGAGCTGAATTGCAAGTTTCTTCAGGAAGTTGGTTATGCAGATGCTGTCCTCAGTGTACGCGAAGCACGTGTACGCCATTTATTGCTGTCAGCCGCAGGGTGGCCCAATGAACCTGATTCTTCTCTCACGACTGCAGATCCGAAGAATAAACACTATCATTGGGAATGTGATAAGCCAAAGTCGAAGCTCAATGATAATGCTGGCTATGATGCCAGCCTTCAAGATGAACTTGCGGAAGACGCTATAGCAAAAATAAATCAGGTTGTGCGCTCAGGCTCAGATTTTCTCACATCTGATGATTTGGGTTCTGGATTTGGTAGTGAGTTAAGTGACCAATCTACCGAACCGGATACAACCGGGAATTCTGGCACTGATAATTCGGAATCATTTGATAACGCAAGTTGGGTGAACAGATTTCGTCGAACAAGTGATGCANATAAACGCANATCA ]
[+] EMBL CD160274 [ GTCAAACAAATTACTTGCAACGAAATGAGTATTCCAAGAATATCACTTCTAGTACCACAGTATCTTCGTTTCTGAACAGTTTTGGGGAAATAGGAAGTGCAGGACAATCGAAGAGATTTGGCCGTAAACATGCAGCCGATACAAATATTTTGGATTTAATCAATACATTGTCAGAAAAAGTTGATAATAATGATGATTTTCTATCAAATTCTGTATCGGATATTAATTCAACCGCTGCAGTATATCCTAGCAATGGTCAAACTCCTAATTCTGTCTCACCTAGCAACAATAAATTATCGAGTTCACCAAATAGTGGAACAAATTTATGGGGATCGGACTTACCAGATCCCAGTGTTGTAGATTCTACTGGTCAGGTTGGCATGAAAGGTCGTATGGATTCTGTAAGAGAATCTAATCCGACAGA ]
[+] EMBL CD160254 [ GTCAAACAAATTACTTGCAACGAAATGAGTATTCCAAGAATATCACTTCTAGTACCACAGTATCTTCGTTTCTGAACAGTTTTGGGGAAATAGGAAGTGCAGGACAATCGAAGAGATTTGGCCGTAAACATGCAGCCGATACAAATATTTTGGATTTAATCAACACATTGTCAGAAAAAGTTGATAATAATGATGATTTTCTATCAAATTCTGTATCGGATATTAATTCAACCGCTGCAGTATATCCTAGCAATGGTCAAACTCCTAATTCTGTCTCACCTAGCAACAATAAATTATCGAGTTCACCAAATAGTGGAACAAATTTATGGGGATCGGACTTACCAGATCCCAGTGTTGTAGATTCTACTGGTCAGGTTGGCATGAAAGGTCGTTTGGATTCTGTAAGAGAATCTA ]
[+] EMBL CD164932 [ TTGATAATAATGATGATTTTCTATCAAATTCTGTATCGGATATTAATTCAACCGCTGCAGTATATCCTAGCAATGGTCAAACTCCTAATTCTGTCTCACCTAGCAACAATAAATTATCGAGTTCACCAAATAGTGGAACAAATTTATGGGGATCGGACTTACCAGATCCCAGTGTTGTAGATTCTACTGGTCAGGTTGGCATGAAAGGTCGTTTGGATTCTGTAAGAGAATCTAATCCGACAGATCCTCTTGGCCTTGGTGATCTGGCTAGTTTAACTGTAGCTAACGAGGCTGATTCAGGTTTTAATGGTGATGTTTTGTGACTC AATTTACCTNNGGAAC ANTATGAATCATn ]
[+] EMBL AI976037 [ ACTCCTAATTCTGTCTCACCTAGCAACAATAAATTATCGAGTTCACCAAATAGTGGAACAAATTTATGGGGATCGGACTTACCAGATCCCAGTGTTGTAGATTCTACTGGTCAGGTTGGCATGAAAGGTCGTTTGGATTCTGTAAGAGAATCTAATCCGACAGATCCTCTTGGCCTTGGTGATCTGGCTAGTTTAACTGTAGCTAACGAGGCTGATTCAGGTTTAAATGGTGATG TTTGTGACTCAAATTTACCT GGAAACAATTATGAATCATCAGTGTTAGGTGGCTCTGTCAGTAGTAATGCTCAAGTAGACAGTGCAGCAAATATTTCATCGACTTACTCAACTGGTCGTCGACCGTGGGTCCCGAGATATACACTTCGCGGTCACTTTGATGG]
[-] EMBL CD189162 [ ATGAAAGGTCGTTTGGATTCTGTAAGAGAATCTAATCCGACAGATCCTCTTGGCCTTGGTGATCTGGCTAGTTTAACTGTAGCTAACGAGGCTGATTCAGGTTTAAATGGTGATG TTTGTGACTCAAATTTACCT GGAAACAATTATGAATCATCAGTGTTAGGTGGCTCTGTCAGTAGTAATGCTCAAGTAGACAGTGCAGCAAATATTTCATCGACTTACTCAACTGGTCGTCGACCGTGGGTCCCGAGATATACACTTCGCGGTCA ]
consensusID : consensus_10026#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 744 fasta sequence
[GGCGCGTTACTGAATGTTATGTCTGGAGTGAGGTTAGGTAATACTGATATCTTCGAACGTGTTGGAGCTGAGCCATATGGAAGACCTGGTGAAGAAACTGGTGCAATAGACACTAAGGAAAATGCTCCACACTATACCATTCAAGGAGTATTACATTTCTTGCAAACTGAATGGAATCGTCTGGAAATGCAACGCTCCCAATGGGAAGTCGAGCGAGCTGAATTGCAAGCGCGAATAGCATTCCTTCAAGGTGAGCGTCGTGGACAAGAAAATCTGAAGCAGGACTTAGTTCGACGAATTAAAATGTTAGAATACGGTTTGAAACAGGAGCGTGTCAAATTTCATCTATACAAAGCTTCAGTTTCTACTGGCAACCCACCTGCTTCCATCAAACAAACTGATCAAGAATCTAGTACCAGAAATGAATCAGCCATTGCAAAGCCTGTTCTGAAACCAGCCGAAAAACTAGCTGAGTGTACTGAACAGACTCTCGAGAGCAATGTGAAGTGGAGAGAGAGTCGATTACGTCTTAAACAGTTTCTTCAGGAAGTTGGTTATGCAGATGCTGTCCTCAGTGTACGCGAAGCACGTGTACGCCATTTATTGCTGTCAGCCGCAGGGTGGCCCAATGAACCTGATTCTTCTCTCACGACTGCAGATCCGAAGAATAAACACTATCATTGGGAATGTGATAAGCCAAAGTCGAAGCTCAATGATAATGCTGGCTATGATGCCAGCCTTCAA]
[+] EMBL CD157881 [GGCGCGTTACTGAATGTTATGTCTGGAGTGAGGTTAGGTAATACTGATATCTTCGAACGTGTTGGAGCTGAGCCATATGGAAGACCTGGTGAAGAAACTGGTGCAATAGACACTAAGGAAAATGCTCCACACTATACCATTCAAGGAGTATTACATTTCTTGCAAACTGAATGGAATCGTCTGGAAATGCAACGCTCCCAATGGGAAGTCGAGCGAGCTGAATTGCAAGCGCGAATAGCATTCCTTCAAGGTGAGCGTCGTGGACAAGAAAATCTGAAGCAGGACTTAGTTCGACGAATTAAAATGTTAGAATACGGTTTGAAACAGGAGCGTGTCAAATTTCATCTATACAAAGCTTCAGTTTCTACTGGCAACCCACCTGCTTCCATCAAACAAACCGATCAAGAATCTAGTACCAGAAATGAATCAGCCATTGCAAAGCCTGTTCTGAAACCAGCCGAAAAACTAGCTGAGTGTACTGAACAGACTCTCGGGAGCAATGTGAAGTGGAGAGAGAGTCGATTACGTCTTANACAGTTTCTTCAGGAAAGTGGTTATGCAGATGCTGTCC ]
[+] EMBL AI976455 [ CTGGAGTGAGGTTAGATAATACTGATATCTTCGAACGTGTTGGAGCTGAGCCATATGGAAGACCTGGTGAAGAAACTGGTGCAATAGACACTAAGGAAAATGCTCCACACTATACCATTCAAGGAGTATTACATTTCTTGCAAACTGAATGGAATCGTCTGGAAATGCAACGCTCCCAATGGGAAGTCGAGCGAGCTGAATTGCAAGCGCGAATAGCATTCCTTCAAGGTGAGCGTCGTGGACAAGAAAATCTGAAGCAGGACTTAGTTCGACGAATTAAAATGTTAGAATACGGTTTGAAACAGGAGCGTGTCAAATTTCATCTATACAAAGCTTCAGTTTCTACTGGCAACCCACCTGCTTCCATCAAACAAACTGATCAAGAATCTAGTACCAGAAATGAATCAGCCATTGCAAAGCCTGTTCTGAAACCAGCCGAAAAACTAGCTGAGTGTACTGAACAGACTCTCGAGAGCAATGTGAAGTGGAGAGAGAGTCGATTACGTCTTAAACAGTTTCTTCAGGAAGTTGGTTATGCAGATGCTGTCCTTAGTGTACGCGAAGCACGTGTACGCCA ]
[+] EMBL CD169348 [ AAATGCTCCACACTATACCATTCAAGGAGTATTACATTTCTTGCAAACTGAATGGAATCGTCTGGAAATGCAACGCTCCCAATGGGAAGTCGAGCGAGCTGAATTGCAAGCGCGAATAGCATTCCTTCAAGGTGAGCGTCGTGGACAAGAAAATCTGAAGCAGGACTTAGTTCGACGAATTAAAATGTTAGAATACGGTTTGAAACAGGAGCGTGTCAAATTTCATCTATACAAAGCTTCAGTTTCTACTGGCAACCCACCTGCTTCCATCAAACAAACTGATCAAGAATCTAGTACCAGAAATGAATCAGCCATTGCAAAGCCTGTTCTGAAACCAGCCGAAAAACTAGCTGAGTGTACTGAACAGACTCTCGAGAGCAATGTGAAGTGGAGAGAGAGTCGATTACGTCTTAAACAGTTTCTTCAGGAAGTTGGTTATGCAGATGCTGTCCTCAGTGTACGCGAAGCACGTGTACGCCATTTATTGCTGTCAGCCGCAGGGTGGCCCAATGAACCTGATTCTT ]
[+] EMBL CD094919 [ AAGAAAATCTGAAGCAGGACTTAGTTCGACGAATTAAAATGTTAGAATACGGTTTGAAACAGGAGCGTGTCAAATTTCATCTATACAAAGCTTCAGTTTCTACTGGCAACCCACCTGCTTCCATCAAACAAACTGATCAAGAATCTAGTACCAGAAATGAATCAGCCATTGCAAAGCCTGTTCTGAAACCAGCCGAAAAACTAGCTGAGTGTACTGAACAGACTCTCGAGAGCAATGTGAAGTGGAGAGAGAGTCGATTACGTCTTAAACAGTTTCTTCAGGAAGTTGGTTATGCAGATGCTGTCCTCAGTGTACGCGAAGCACGTGTACGCCATTTATTGCTGTCAGCCGCAGGGTGGCCCAATGAACCTGATTCTTCTCTCACGACTGCAGATCCGAAGAATAAACACTATCATTGGGAATGTGATAAGCCAAAGTCGAAGCTCAATGATAATGCTGGCTATGATGCCAGCCTTCAA]
[+] EMBL CD095157 [ AAGAAAATCTGAAGCAGGACTTAGTTCGACGAATTAAAATGTTAGAATACGGTTTGAAACAGGAGCGTGTCAAATTTCATCTATACAAAGCTTCAGTTTCTACTGGCAACCCACCTGCTTCCATCAAACAAACTGATCAAGAATCTAGTACCAGAAATGAATCAGCCATTGCAAAGCCTGTTCTGAAACCAGCCGAAAAACTAGCTGAGTGTACTGAACAGACTCTCGAGAGCAATGTGAAGTGGAGAGAGAGTCGATTACGTCTTAAACAGTTTCTTCAGGAAGTTGGTTATGCAGATGCTGTCCTCAGTGTACGCGAAGCACGTGTACGCCATTTATTGCTGTCAGCCGCAGGGTGGCCCAATGAACCTGATTCTTCTCTCACGACTGCAGATCCGAAGAATAAACACTATCATTGGGAATGTGATAAGCCAAAGTCGAAGCTCAATGAT ]
[+] EMBL CD169481 [ AAGAAAATCTGAAGCAGGACTTAGTTCGACGAATTAAAATGTTAGAATACGGTTTGAAACAGGAGCGTGTCAAATTTCATCTATACAAAGCTTCAGTTTCTACTGGCAACCCACCTGCTTCCATCAAACAAACTGATCAAGAATCTAGTACCAGAAATGAATCAGCCATTGCAAAGCCTGTTCTGAAACCAGCCGAAAAACTAGCTGAGTGTCCTGAACAGACTCTCGAGAGCAATGTGAAGTGGAGAGAGAGTCGATTACGTCTTAAACAGTTTCTTCAGGAAG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10026#0 AGGAAAATGCTCCACACTATACCATTCAAGGAGTATTACATTTCTTGCAAACTGAATGGA 60
consensus_10026#1 ------------------------------------------------------------
consensus_10026#0 ATCGTCTGGAAATGCAACGCTCCCAATGGGAAGTCGAGCGAGCTGAATTGCAAGTTTCTT 120
consensus_10026#1 ------------------------------------------------------------
consensus_10026#0 CAGGAAGTTGGTTATGCAGATGCTGTCCTCAGTGTACGCGAAGCACGTGTACGCCATTTA 180
consensus_10026#1 ------------------------------------------------------------
consensus_10026#0 TTGCTGTCAGCCGCAGGGTGGCCCAATGAACCTGATTCTTCTCTCACGACTGCAGATCCG 240
consensus_10026#1 ------------------------------------------------------------
consensus_10026#0 AAGAATAAACACTATCATTGGGAATGTGATAAGCCAAAGTCGAAGCTCAATGATAATGCT 300
consensus_10026#1 ------------------------------------------------------------
consensus_10026#0 GGCTATGATGCCAGCCTTCAAGATGAACTTGCGGAAGACGCTATAGCAAAAATAAATCAG 360
consensus_10026#1 ------------------------------------GGCGCGTTACTGAATGTTATGTCT 24
* *** ** ** * *
consensus_10026#0 GTTGTGCGCTCAGGCTCAGATTTTCTCACATCTGATGATTTGGGTTCTGGATTTGGTAGT 420
consensus_10026#1 GGAGTGAGGTTAGGT---AATACTGATATCTTCGAACGTGTTGGAGCTGAGCCATATGGA 81
* *** * * *** ** * * * ** * * ** *** * *
consensus_10026#0 GAGTTAAGTGACCAATCTACCGAACCGGATACAACCGGGAATTCTG-GCACTG-ATAATT 478
consensus_10026#1 AGACCTGGTGAAGAAACTGGTGCAATAGACACTAAGGAAAATGCTCCACACTATACCATT 141
**** ** ** * * ** ** * * *** ** **** * ***
consensus_10026#0 CGGAATCATTTGATAACGCAAGTTGGGTGAACAGATTTCGTCGAACAAGTGATGCANATA 538
consensus_10026#1 CA-AGGAGTATTACATTTCTTGCAAACTGAATGGAATCGTCTGGAAATGCAACGCTCCCA 200
* * * * * * * * **** ** * * * * * * ** *
consensus_10026#0 AACGCANATCACAGGGTCAAACAAATTACTTGCAACGAAATGAGTATTCCAAGATATCAC 598
consensus_10026#1 ATGGGAAGTC---GAGCGAGCTGAATTGCAAGCGCGAATAGCATTCCTTCAAGGTGA-GC 256
* * * ** * * * **** * ** * * * * * **** * *
consensus_10026#0 TTCTAGTACCACAGTATCTTCGTTTCTGAACAGTTTTGGGGAAATAGGAAGT-GCAGGAC 657
consensus_10026#1 GTCGTGGACAAGAAAATCTGAAGCAGGACTTAGTTC-GACGAATTAAAATGTTAGAATAC 315
** * ** * * **** **** * *** ** * ** * **
consensus_10026#0 AATCGAAGAGATTTGGCCGTAAACATGCAGCCGATACAAATATTTTGGATTTAATCAATA 717
consensus_10026#1 GGTTTGAAACAGGAGCGTGTCAA-ATTTCATCTATACAAA-GCTTCAGTTTCTACTGGCA 373
* * * * * ** ** ** * ******* ** * ** * *
consensus_10026#0 CATTGTCAGAAAAAGTTGATAATAATGATGATTTTCTATCAAATTCTGTATCGGATATTA 777
consensus_10026#1 ACCCACCTGCTTCCATCAAACAAACTGATCAA--------GAATCTAGTACCAGAAATGA 425
* * * * * * **** * *** *** * ** ** *
consensus_10026#0 ATTCAACCGCTGCA--GTATATCCTAGCAATGGTCAAACTCCTAATTCTGTCTCACCTAG 835
consensus_10026#1 AT-CAGCCATTGCAAAGCCTGTTCTGAAACCAGCCGAAAAACTAGCTGAGTGTA--CTG- 481
** ** ** **** * * * ** * * * ** *** * ** * **
consensus_10026#0 CAACAATAAATTATCGAGTTCACCAAATAGTGGAACAAATTTATGGGGATCGGACTTACC 895
consensus_10026#1 ----AACAGACTCTCGAGAGCAATGTGAAGTGGA--------GAGAGAGTCG-----ATT 524
** * * * ***** ** ****** * * *** *
consensus_10026#0 AGATCCCAGTGTTGTAGATTCTACTGGTCAGGTTGGCATGAAAGGTCGTTTGGATTCTGT 955
consensus_10026#1 ACGTCTTAA-ACAGTTTCTTCAGGAAGTTGGTTATGCAGATGCTGTCCTCAGTGTACGCG 583
* ** * ** *** ** * * *** *** * * * *
consensus_10026#0 AAGAGAATCTAATCCGACAGATCCTCTTGGCCTT--GGTGATCTGGCTAGTTTAACTGTA 1013
consensus_10026#1 AAGCACGTGTACGCCATTTATTGCTGTCAGCCGCAGGGTGGCCCAATGAACCTGATTCTT 643
*** * ** ** * ** * *** **** * * * * * *
consensus_10026#0 GCTAACGAGGCTGATTCAGGTTTAAATGGTGATGTTTGTGACTCAATTTACCTGGAAACA 1073
consensus_10026#1 -CTCTCACGACTG---CAGATCCGAAGAATAAACACTATCATTGGGAATGTGATAAGCCA 699
** * * *** *** * ** * * * * * * * * **
consensus_10026#0 TTATGAATCATCAGTGTTA--GGTGGCTCTGTCAGTAGTAATGCTCAAGTAGACAGTGCA 1131
consensus_10026#1 AAGTCGAAGCTCAATGATAATGCTGGCTATG---ATGCCAGCCTTCAA------------ 744
* * *** ** ** * ***** ** * * ****
consensus_10026#0 GCAAATATTTCATCGACTTACTCAACTGGTCGTCGACCGTGGGTCCCGAGATATACACTT 1191
consensus_10026#1 ------------------------------------------------------------
consensus_10026#0 CGCGGTCACTTTGATGG 1208
consensus_10026#1 -----------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||