These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10037#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1137 fasta sequence [TTGTGAACTACAATGAATGCAACAAGTTATAACGGAGTGGATGGTAAGGATGAAATTCTATCCTCCTTGGAAAAATTATCTAAAACGGAACTTGAAGCCTTATTATCTGATCATGAAGGCATAAAGAAGCTGGCTAAAAATTGTCCCGATATTAAAAAGATCGAGTCTGACAAAGAAGCCTGCATGAATGAGAATCGACGTCAAGCTGAAGCAAATCTATCTATGGAGCCAACTTTTAATATGATCAAAACGGAGCTTGTGGAAACTTATTCTAATTATAAACAATTAGAAATTGAATATATGAAACGTAAATCAGAAGTTGACAATATCGGTACAAAATACTCTCCGAGTGTAATTCTTGCTTTGTTACAAACTGCCAACGCTCAAGCAGAGGAACAGTCTGAAGAACTGGCTAGTCGATTTCTTGACAAAGCCATGGATGTTGATGCATTTTTGAAAGA-TTTTATTCCTCTTC-GTAAACTA-TGTAATGAACGTA-GATTTAAATGTGAAAAGTTAGCGGAACAAATATCATCTGGTCATATAAGGGTGTCAAGCTTTACCAATGCTCCTCACTCGTCATATGTACCTAATGTGATGATGAATTCAGATGTGTCAGGCAGTACATCACAACTTTATCCTTCATT-ACTATCTCT-AAGTAGTACCAATGACCATTTAGCACCAACTTATGGCTTTAAAATATAAACATGTTGATTAAATGTATGTTTGTTTGTGCTTGCCTTTGTGCATGTAACCAAATATTAGTTTTAATCATTTCCTTTTGTCAATCAAATGGCATATTGGATTAATAAACGACTATACAATTAGTCACAATTTATATTCAGCGGCGATGTGTTGAGATTGAACTCTTTAACAATATTATTAACTACTCAGATTTAATTGTTTTTATATTGCTCACTAGAACAGTT-A-AACAAAAAAAAACTGTAC-GTTGTCTTTATTCACTTTCTTTTC-ACCGACTNTTATA-TGTA--TTTTTTGC-A-GGAACTAGACCAA--TATCGCA-TCATTGTA-TTATGT-CATATTAGAAAAAAATTATTTAAATGAGATAATCTTTTGCTATCATTTCTTTCTCGTAGTTCTAAATAAGTGGCTTACTTTTGAGATAGCTTAGTAGTTAAAGCATTG] [+] EMBL AI068231 [TTGTGAACTACAATGAATGCAACAAGTTATAACGGAGTGGATGGTAAGGATGAAATTCTATCCTCCTTGGAAAAATTATCTAAAACGGAACTTGAAGCCTTATTATCTGATCATGAAGGCATAAAGAAGCTGGCTAAAAATTGTCCCGATATTAAAAAGATCGAGTCTGACAAAGAAGCCTGCATGAATGAGAATCGACGTCAAGCTGAAGCAAATCTATCTATGGAGCCAACTTTTAATATGATCAAAACGGAGCTTGTGGAAACTTATTCTAATTATAAACAATTAGAAATTGAATATATGAAACGTAAATCAGAAGTTGACAATATCGGTACAAAATACTCTCCGAGTGTAATTCTTGCTTTGTTACAAACTGCCAACGCTCAAGCAGAGGAACAGTCTGAAGAACTGGCTAGTCGATTTCTTGACAAAGCCATGGATGTTGATGCATTTTTGAAAGA TTTTATTCCTCTTC GTAAACTA TGTAATGAACGTA GATTTAAATGTGAAAAGTTAGCGGAACAAATATCATCTGGTCATATAAGGGTGTCAAGCTTTACCAATGCTCCTCACTCGTCATATGTACCTAATGTGATGATGAATTCAGATGTGTCAGGCAGTACATCACAACTTTA ] [+] EMBL AI067432 [ TGTGAACTACAATGAATGCAACAAGTTATAACGGAGTGGATGGTAAGGATGAAATTCTATCCTCCTTGGAAAAATTATCTAAAACGGAACTTGAAGCCTTATTATCTGATCATGAAGGCATAAAGAAGCTGGCTAAAAATTGTCCCGATATTAAAAAGATCGAGTCTGACAAAGAAGCCTGCATGAATGAGAATCGACGTCAAGCTGAAGCAAATCTATCTATGGAGCCAACTTTTAATATGATCAAAACGGAGCTTGTGGAAACTTATTCTAATTATAAACAATTAGAAATTGAATATATGAAACGTAAATCAGAAGTTGACAATATCGGTACAAAATACTCTCCGAGTGTAATTCTTGCTTTGTTACAAACTGCCAACGCTCAAGCAGAGGAACAGTCTGAAGAACTGGCTAGTCGATTTCTTGACAAAGCCATGGATGTTGATGCATTTTTGAAAGA TTTTATTCCTCTTC GTAAACTA TGTAATGAACGTA GATTTAAATGTGAAAAGTTAG ] [+] EMBL AI067656 [ TGTGAACTACAATGAATGCAACAAGTTATAACGGAGTGGATGGTAAGGATGAAATTCTATCCTCCTTGGAAAAATTATCTAAAACGGAACTTGAAGCCTTATTATCTGATCATGAAGGCATAAAGAAGCTGGCTAAAAATTGTCCCGATATTAAAAAGATCGAGTCTGACAAAGAAGCCTGCATGAATGAGAATCGACGTCAAGCTGAAGCAAATCTATCTATGGAGCCAACTTTTAATATGATCAAAACGGAGCTTGTGGAAACTTATTCTAATTATAAACAATTAGAAATTGAATATATGAAACGTAAATCACAAGTTGACAATATCGGTACAAAATACTCTCCGAGTGTAATTCTTGCTTTGTTACAAACTGCCAACGCTCAAGCAGAGGAACAGTCTGAAGAACTGGCTAc ] [+] EMBL CD080689 [ aggTGAGAATCGACGTCAAGCTGAAGCAAATCTATCTATGGAGCCAACTTTTAATATGATCAAAACGGAGCTTGTGGAAACTTATTCTAATTATAAACAATTAGAAATTGAATATATGAAACGTAAATCAGAAGTTGACAATATCGGTACAAAATACTCTCCGAGTGTAATTCTTGCTTTGTTACAAACTGCCAACGCTCAAGCAGAGGAACAGTCTGAAGAACTGGCTAGTCGATTTCTTGACAAAGCCATGGATGTTGATGCATTTTTGAAAGA TTTTATTCCTCTTC GTAAACTA TGTAATGAACGTA GATTTAAATGTGAAAAGTTAGCGGAACAAATATCATCTGGTCATATAAGGGTGTCAAGCTTTACCAATGCTCCTCACTCGTCATATGTACCTAATGTGATGATGAATTCAGATGTGTCAGGCAGTACATCACAACTTTATCCTTCATT ACTATCTCT AAGTAGTACCAATGACCATTTAGCACCAACTTATGGCTTTAAAATATAAACATGTTGATTAAATGTATGTTTGTTTGTGCTTGCCTTTGTGCATGTAACCAAATATTAGTTNTAATCATTTCCTTTTGTCAATCAAATGGCATATTGGATTAATAAACGACTATACAATTAGTCACAATTTATATTCAGCGGCGATGTGTTGAGATTGAACTCTNTAAACATATTATTAACTACTCAGATNTAATTG NTTTATATTGCTCACTAGAACAGNT A ANNACAAAAAAACTGTAC GTTGTCTTTATTCACTTTCTTTTC ACCGACTNNTATA TGNA TTTTTTGC A GGAACTAGACCAA TATCGCA TCATTGNA TTATGT CATATTAGAAAA ] [+] EMBL CD080690 [ acccAATCGACGTACAGCTGAAGCAAATCTATCTATGGAGCCAACTTTTAATATGATCAAAACGGAGCTTGTGGAAACTTATTCTAATTATAAACAATTAGAAATTGAATATATGAAACGTAAATCAGAAGTTGACAATATCGGTACAAAATACTCTCCGAGTGTAATTCTTGCTTTGTTACAAACTGCCAACGCTCAAGCAGAGGAACAGTCTGAAGAACTGGCTAGTCGATTTCTTGACAAAGCCATGGATGTTGATGCATTTTTGAAAGA TTTTATTCCTCTTC GTAAACTA TGTAATGAACGTA GATTTAAATGTGAAAAGTTAGCGGAACAAATATCATCTGGTCATATAAGGGTGTCAAGCTTTACCAATGCTCCTCACTCGTCATATGTACCTAATGTGATGATGAATTCAGATGTGTCAGGCAGTACATCACAACTTTATCCTTCATT ACTATCTCT AAGTAGTACCAATGACCATTTAGCACCAACTTATGGCTTTAAAATATAAACATGTTGATTA ] [+] EMBL CD181681 [ TGAAGAACTGGCTAGTCGATTTCTTGACAAAGCCATGGATGTTGATGCATTTTTGAAAGA TTTTATTCCTCTTC GTAAACTA TGTAATGAACGTA GATTTAAATGTGAAAAGTTAGCGGgaag ] [-] EMBL CD074614 [ TTGACAAAGCCATGGATGTTGATGCATTTTTGAAAGA TTTTATTCCTCTTC GTAAACTA TGTAATGAACGTA GATTTAAATGTGAAAAGTTAGCGGAACAAATATCATCTGGTCATATAAGGGTGTCAAGCTTTACCAATGCTCCTCACTCGTCATATGTACCTAATGTGATGATGAATTCAGATGTGTCAGGCAGTACATCACAACTTTATCCTTCATT ACTATCTCT AAGTAGTACCAATGACCATTTAGCACCAACTTATGGCTTTAAAATATAAACATGTTGATTAAATGTATGTTTGTTTGTGCTTGCCTTTGTGCATGTAACCAAATATTAGTTTTAATCATTTCCTTTTGTCAATCAAATGGCATATTGGATTAATAAACGACTATACAATTAGTCACAATTTATATTCAGCGGCGATGTGTTGAGATTGAACTCTTTAACAATATTATTAACTACTCAGATTTAATTGTTTTTATATTGCTCACT ] [-] EMBL CD162289 [ AGAGTGTTATTCCTCTTCGGTAAACAATTGTAATTAATGTAGGATTTAAATGTAAAAGGTTAGCGTAACAAAAATCATCTGGTCATATAAGGGTGTCAAGCTTTACCAATGCTCCTCACTCGTCATATGTACTTAATGTGATCATGAATTCAGATGTGTCAGGCAGGACATCACAACTTTATCCTTCATT ACTACCTCT AAGTAGTATCAATGACCATTTAGCACCGACTTATGGCTTTAAAATATAAACATGTTGATTAAATGTATGTTCGTTTGTGCTTGCCTTTGTGCATGTAACCAAATATTAGTTTTAATCATTTCCTTTTGTCAATCAAATGGCATATTGGATTAATAATCGACTATACAATTAGTCACAATTTATATTCAGCGCCCATGTGTTGAGATTGAACTCTTTAACAATATTATTAAATACTCAGATTTAATTGTTTTTATATTGCTCACTAGAACAGTT ATAACAAAATAAACCTGTAC GTTGTCTTTATTCAC ] [-] EMBL CD162278 [ AGATTTTTATTCCTCTTC GTAAACTA TGTAATGAACGTA GATTTTAATGTGAAAAGTTAGCGGAACAAATATCATCTGGTCATATAAGGGTGTCAAGCTTTACCAATGCTCCTCACTCGTCATATGTACGTAATGTGATGATGAATTCAGATGTGTCAGGCAGTACATCACAACTTTATCCTTCATT ACTACCTCT AAGTAGTACCAATGACCATTTAGCACCAACTTATGGCTTTAAAATATAAACATGTTGATTAAATGTATGTTTGTTTGTGCTTGCCTTTGTGCATGTAACCAAATATTAGTTTTAATCATTTCCTTTTGTCAATCAAATGGCATATTGGATTAATAAACGACTATACAATTAGTCACAATTTATATTCAGCGGCGATGTGTTGAGATTGAACTCTTTAACAATATTATTAACTACTCAGATTTAATTGTTTTTATATTGCTCACTAGAACAGTTAA AACAAAAAAAAACTGTAC GTTGTCTTTATTCACTTTCTTTTCAACCCACTTTAATA Ttgt ] [+] EMBL CD091612 [ CGGAACAAATATCATCTGGTCATATAAGGGTGTCAAGCTTTACCAATGCTCCTCACTCGTCATATGTACCTAATGTGATGATGAATTCAGATGTGTCAGGCAGTACATCACAACTTTATCCTTCATT ACTATCTCT AAGTAGTACCAATGACCATTTAGCACCAACTTATGGCTTTAAAATATAAACATGTTGATTAAATGTATGTTTGTTTGTGCTTGCCTTTGTGCATGTAACCAAATATTAGTTTTAATCATTTCCTTTTGTCAATCAAATGGCATATTGGATTAATAAACGACTATACAATTAGTCACAATTTATATTCAGCGGCGATGTGTTGAGATTGAACTCTTTAACAATATTATTAACTACTCAGATTTAATTGTTTTTATATTGCTCACTAGAACAGTTAA AACAAAAAAAAACTGTAC GTTGTCTTTATTCACTTTCTTTTCAACCGACTNTAATATTGTAT TTTTTTGCAA GGAACTAGACCAAATTATCGCATTCATTGTATTTATGTCCATATTAGAAAAAAATTATTTAAATGAGATAATCTTTTGCTATCATTTCTTTCTCGTAGTTCTAAATAAGTGGCTTACTTTTGAGATAGCTTAGTAGTTAAAGCATTG] [+] EMBL SMAA25590 [ ATCCTTCATTNACTATCTCTAAAGTA TACCAATGACCA TTAGCACCAACTTATGGCTTT AAATAT AACATGTTGATT AATGTATGTTTGTTTGTGCTTGCCTTTGTGCATGTAACCAAATATTAGTCTT ATCATTTCCTTTTGTCAATCAAATGGCATATTGGATTAAT AACGAC ATACAATTAGTCACAATTTATATTCAGCGGCGATGTGTTGAGATTGAACTCTTTAACAATATTATTAACTACTCAGATTTAATTG TTTTATATTGCTCACTAGAACAGTT A AAC AAAAAAAACTGTACGGTTGTCTTTATTCACTTTCTTTTC ACCGACCTTTATATTGTATTTTTTTTGC AGGGAACTAGACCAAATTATCGCATTCA TGTATTTATGTCCATATTAGAAAAAAA ] consensusID : consensus_10037#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 242 fasta sequence [ATGTAACCAAATATTAGTTTTAATCATTTCCTTTTGTCAATCAAAGGGGGTATTGGATTAATAAGCGACTATACAATTAGTCACAATTTATATTCAGCGGTCGATGTGTTGAGAATGAAGTCTTTAACAATATTATTAAGTACTCAGATTTAATTGTTTTTATATTGATCAATAGAACAGTTATAACTAAAAAAACCTGTACGTTGTTTTTATTCACTTATTTTCAAACAACTTTAATATTG] [-] EMBL CD162292 [ATGTAACCAAATATTAGTTTTAATCATTTCCTTTTGTCAATCAAAGGGGGTATTGGATTAATAAGCGACTATACAATTAGTCACAATTTATATTCAGCGGTCGATGTGTTGAGAATGAAGTCTTTAACAATATTATTAAGTACTCAGATTTAATTGTTTTTATATTGATCAATAGAACAGTTATAACTAAAAAAACCTGTACGTTGTTTTTATTCACTTATTTTCAAACAACTTTAATATTG] consensusID : consensus_10037#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 104 fasta sequence [AATTTTTTCTATTTTGGACATAAATACAATCAATGCGATAATTTGGTCTAGTTCCTTGCAAAAAAATACAATATTAAAGTCGGTTGAAAAGAAAGTGAATAAAG] [+] EMBL CD074613 [AATTTTTTCTATTTTGGACATAAATACAATCAATGCGATAATTTGGTCTAGTTCCTTGCAAAAAAATACAATATTAAAGTCGGTTGAAAAGAAAGTGAATAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10037#0 TTGTGAACTACAATGAATGCAACAAGTTATAACGGAGTGGATGGTAAGGATGAAATTCTA 60 consensus_10037#1 ------------------------------------------------------------ consensus_10037#2 ------------------------------------------------------------ consensus_10037#0 TCCTCCTTGGAAAAATTATCTAAAACGGAACTTGAAGCCTTATTATCTGATCATGAAGGC 120 consensus_10037#1 ------------------------------------------------------------ consensus_10037#2 ------------------------------------------------------------ consensus_10037#0 ATAAAGAAGCTGGCTAAAAATTGTCCCGATATTAAAAAGATCGAGTCTGACAAAGAAGCC 180 consensus_10037#1 ------------------------------------------------------------ consensus_10037#2 ------------------------------------------------------------ consensus_10037#0 TGCATGAATGAGAATCGACGTCAAGCTGAAGCAAATCTATCTATGGAGCCAACTTTTAAT 240 consensus_10037#1 ------------------------------------------------------------ consensus_10037#2 ------------------------------------------------------------ consensus_10037#0 ATGATCAAAACGGAGCTTGTGGAAACTTATTCTAATTATAAACAATTAGAAATTGAATAT 300 consensus_10037#1 ------------------------------------------------------------ consensus_10037#2 ------------------------------------------------------------ consensus_10037#0 ATGAAACGTAAATCAGAAGTTGACAATATCGGTACAAAATACTCTCCGAGTGTAATTCTT 360 consensus_10037#1 ------------------------------------------------------------ consensus_10037#2 ------------------------------------------------------------ consensus_10037#0 GCTTTGTTACAAACTGCCAACGCTCAAGCAGAGGAACAGTCTGAAGAACTGGCTAGTCGA 420 consensus_10037#1 ------------------------------------------------------------ consensus_10037#2 ------------------------------------------------------------ consensus_10037#0 TTTCTTGACAAAGCCATGGATGTTGATGCATTTTTGAAAGATTTTATTCCTCTTCGTAAA 480 consensus_10037#1 ------------------------------------------------------------ consensus_10037#2 ------------------------------------------------------------ consensus_10037#0 CTATGTAATGAACGTAGATTTAAATGTGAAAAGTTAGCGGAACAAATATCATCTGGTCAT 540 consensus_10037#1 ------------------------------------------------------------ consensus_10037#2 ------------------------------------------------------------ consensus_10037#0 ATAAGGGTGTCAAGCTTTACCAATGCTCCTCACTCGTCATATGTACCTAATGTGATGATG 600 consensus_10037#1 ------------------------------------------------------------ consensus_10037#2 ------------------------------------------------------------ consensus_10037#0 AATTCAGATGTGTCAGGCAGTACATCACAACTTTATCCTTCATTACTATCTCTAAGTAGT 660 consensus_10037#1 ------------------------------------------------------------ consensus_10037#2 ------------------------------------------------------------ consensus_10037#0 ACCAATGACCATTTAGCACCAACTTATGGCTTTAAAATATAAACATGTTGATTAAATGTA 720 consensus_10037#1 ------------------------------------------------------------ consensus_10037#2 ------------------------------------------------------------ consensus_10037#0 TGTTTGTTTGTGCTTGCCTTTGTGCATGTAACCAAATATTAGTTTTAATCATTTCCTTTT 780 consensus_10037#1 -------------------------ATGTAACCAAATATTAGTTTTAATCATTTCCTTTT 35 consensus_10037#2 ------------------------------------------------------------ consensus_10037#0 GTCAATCAAATGGCATATTGGATTAATAAACGACTATACAATTAGTCACAATTTATATTC 840 consensus_10037#1 GTCAATCAAAGGGGGTATTGGATTAATAAGCGACTATACAATTAGTCACAATTTATATTC 95 consensus_10037#2 ------------------------------------------------------------ consensus_10037#0 AGCGG-CGATGTGTTGAGATTGAACTCTTTAACAATATTATTA-ACTACTCAGATTTAAT 898 consensus_10037#1 AGCGGTCGATGTGTTGAGAATGAAGTCTTTAACAATATTATTA-AGTACTCAGATTTAAT 154 consensus_10037#2 --------AATTTTTTCTATTTTGGACATAAATACAATCAATGCGATAATTTGGTCTAGT 52 * * ** * * * * ** * ** * * ** * * * ** * consensus_10037#0 TGTTTTTATATTGCT-CACTAGAACAGTTA-AACAAAAAAAAACTGTACGTTGTCTTTAT 956 consensus_10037#1 TGTTTTTATATTGAT-CAATAGAACAGTTATAACTAAAAAAACCTGTACGTTGTTTTTAT 213 consensus_10037#2 TCCTTGCAAAAAAATACAATATTAAAGTCG-GTTGAAAAGAAAGTGAATAAAG------- 104 * ** * * * ** ** * *** **** ** ** * * consensus_10037#0 TCACTTTCTTTTCACCGACTNTTATATGTATTTTTTGCAGGAACTAGACCAATATCGCAT 1016 consensus_10037#1 TCACTTATTTTCAAACAACTTTAATATTG------------------------------- 242 consensus_10037#2 ------------------------------------------------------------ consensus_10037#0 CATTGTATTATGTCATATTAGAAAAAAATTATTTAAATGAGATAATCTTTTGCTATCATT 1076 consensus_10037#1 ------------------------------------------------------------ consensus_10037#2 ------------------------------------------------------------ consensus_10037#0 TCTTTCTCGTAGTTCTAAATAAGTGGCTTACTTTTGAGATAGCTTAGTAGTTAAAGCATT 1136 consensus_10037#1 ------------------------------------------------------------ consensus_10037#2 ------------------------------------------------------------ consensus_10037#0 G 1137 consensus_10037#1 - consensus_10037#2 - |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||