These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10043#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 769 fasta sequence [GCTTTTTATTAAACCAAACACGATGTGTAAAACGAAAAATGAGTTGTCCTTTACGCGTAATGAATGCCAAAAGTTGGCTGGTAATAATTATTGACTTTTACAATACACAACATACGCTGCAGTTTTCTTCTGTTTGCGAGAATTATACAAATATAGGAGCGAAGCACATAAATTCAATTTGGTAAAACAATTGTTTCTGCTGCGATTTTTAATAAATCTTTTGTTTTTAATCGCCAGTTTTTAGGATCTTTACTGATTTGGCACCATACTTCACCATGATGAGGTTCGGCAGTAACACAACGTCGGTATACTTCTTTCTGTTGATCTTCCGTCCCGTGTTGTAATTCAAATTTGTAAAAGTAAGCCCATGCATCGCCAAGATCTGGTTCTAGTTTCACCGTTCTTGTAAACCAATTACGAGCTTTCATGACCAGCCGTTCACACCAAAACATTTTGGATACAGCTAGAAGTACCAGTGGATCATGTTCACATTTCTTCAAAGCGTCCACTGATTTGCTTTTACGTTGAGCTCTAGGAGTCATAAATATTGCCTCATTCGGTTTTAAGTTTTCTTCTGACAACTGTTCATAAACTTGAGTAAGCATTAACCACAACTTTGGTGCCTGATTATATGTTAATGTAGCTTTTTGTAACATTTCTAAAGCTTTATTTAATTCACCTAGACACCATTCCAATCTAGCTGCTTTCATCCATACACGAGCTGTAGAAGCAGAAGCACAAGCTTTATCTAGTAATCGACGTGCACGTG] [+] EMBL CD073193 [GCTTTTTATTAAACCAAACACGATGTGTAAAACGAAAAATGAGTTGTCCTTTACGCGTAATGAATGCCAAAAGTTGGCTGGTAATAATTATTGACTTTTACAATACACAACATACGCTGCAGTTTTCTTCTGTTTGCGAGAATTATACAAATATAGGAGCGAAGCACATAAATTCAATTTGGTAAAACAATTGTTTCTGCTGCGATTTTTAATAAATCTTTTGTTTTTAATCGCCAGTTTTTAGGATCTTTACTGATTTGGCACCATACTTCACCATGATGAGGTTCGGCAGTAACACAACGTCGGTATACTTCTTTCTGTTGATCTTCCGTCCCGTGTTGTAATTCAAATTTGTAAAAGTAAGCCCATGCATCGCCAAGATCTGGTTCTAGTTTCACCGTTCTTGTAAACCAATTACGAGCTTTCATGACCAGCCGTTCACACCAAAACATTTTGGATACAGCTAGAAGTACCAGTGGATCATGTTCACATTTCTTCAAAGCGTCCACTGATTTGCTTTTACGTTGAGCTCTAGGAGTCATAAATATTGCCTCATTCGGTTTTAAGTTTTCTTCTGACAACTGTTCATAAACTTGA ] [+] EMBL AI067547 [ TCTTCTGTTTGCGAGAATTATACAAATATAGGAGCGAAGCACATAAATTCAATTTGGTAAAACAATTGTTTCTGCTGCGATTTTTAATAAATCTTTTGTTTTTAATCGCCAGTTTTTAGGATCTTTACTGATTTGGCACCATACTTCACCATGATGAGGTTCGGCAGTAACACAACGTCGGTATACTTCTTTCTGTTGATCTTCCGTCCCGTGTTGTAATTCAAATTTGTAAAAGTAAGCCCATGCATCGCCAAGATCTGGTTCTAGTTTCACCGTTCTTGTAAACCAATTACGAGCTTTCATGACCAGCCGTTCACACCAAAACATTTTGGATACAGCTAGAAGTACCAGTGGATCATGTTCACATTTCTTCAAAGCGTCCACcg ] [-] EMBL CD078731 [ GAGCTTTCATGACCAGCCGTTCACACCAAAACATTTTGGATACAGCTAGAAGTACCAGTGGATCATGTTCACATTTCTTCAAAGCGTCCACTGATTTGCTTTTACGTTGAGCTCTAGGAGTCATAAATATTGCCTCATTCGGTTTTAAGTTTTCTTGTGGCAACTGTTCATAAACTTGAGTAAGCATTAACCACAACTTTGGTGCCTGATTATATGTTAATGTAGCTTTTTGTAACATTTCTAAAGCTTTATTTAATTCACCTAGACACCATTCCAATCTAGCTGCTTTCATCCATACACGAGCTGTAGAAGCAGAAGCACAAGCTTTATCTAGTAATCGACGTGCACGTG] consensusID : consensus_10043#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 737 fasta sequence [GTTGGACATTCTTGAAGTGCTTTTGAAATAAGTGAATCAGCTACAGGTTTCAAATTAGCTCTTACTTCTAATCTGATAGCTTCCAACCATAATTCTGGTGTTTTAGGATTTTGTGAACGGGCCTTCTCCAAAATAGAACGTGCTTTAGTTAAATTACATTGTCGTTCTTCAAATCTGGCCAATTGCAACCACAG-AGCAGTATAATGTGGGTTATGATTCAGTCCCTCACGATAGGTGTTTCTAGCACGTTCTTTTAATGATTCAGCCTCATTCGGTTTTAAGTTTTCTTCTGACAACTGTTCATAAACTTGACTAAGCATTAACCACAACTTTGGTGCCTGATTATATGTTAATGTAGCTTTTTGTAACATTTCTAAAGCTTTATTTAATTCACCTAGACACCATTCCAATCTAGCTGCTTTCATCCATACACGAGCTGTAGAAGCAGAAGCACAAGCTTTATCTAGTAATCGACGTGCACGTGCATA-TTCTTTATTTTCTGACTCAAGTTTTACAGCAGCTAACCATATCTCCTCTGAATTGGGATTAGCTTCAAATGCACGAGCTAGAATAGAACGAGCTGCTGGAACATCACCAGCAAGCCAACGTGTTTTTGCTGCCATTGGCCCCCCCACTTTCGCTTGAGGACAATGACAACAGCTTGCGCAAAAGTTCTTGTAAAGTTTCTCTCGTTCCATGATTTCGTTCAAAATAAGCAGCACGTAGCCAGATACTTT] [-] EMBL CD112744 [GTTGGACATTCTTGAAGTGCTTTTGAAATAAGTGAATCAGCTACAGGTTTCAAATTAGCTCTTACTTCTAATCTGATAGCTTCCAACCATAATTCTGGTGTTTTAGGATTTTGTGAACGGGCCTTCTCCAAAATAGAACGTGCTTTAGTTAAATTACATTGTCGTTCTTCAAATCTGGCCAATTGCAACCACAG AGCAGTATAATGTGGGTTATGATTCAGTCCCTCACGATAGGTGTTTCTAGCACGTTCTTTTAATGATTCAGCCTCATTCGGTTTTAAGTTTTCTTCTGACAACTGTTCATAAACTTGACTAAGCATTAACCACAACTTTGGTGCCTGATTATATGTTAATGTAGCTTTTTGTAACATTTCTAAAGCTTTATTTAATTCACCTAGACACCATTCCAATCTAGCTGCTTTCATCCATACACGAGCTGTAGAAGCAGAAGCACAAGCTTTATCTAGTAATCGACGTGCACGTGC ] [+] EMBL CD202965 [ AATTGCAACCACAGAAGCAGTATAATGTGGGTTATGATTCAGTCCCTCACGATAGGTGTTTCTAGCACGTTCTTTTAATGATTCAGCCTCATTCGGTTTTAAGTTTTCTTCTGACAACTGTTCATAAACTTGACTAAGCATTAACCACAACTTTGGTGCCTGATTATATGTTAATGTAGCTTTTTGTAACATTTCTAAAGCTTTATTTAATTCACCTAGACACCATTCCAATCTAGCTGCTTTCATCCATACACGAGCTGTAGAAGCAGAAGCACAAGCTTTATCTAGTAATCGACGTGCACGTGCATATTTCTTTA ] [+] EMBL CD113088 [ CAGTATAATGTGGGTTATGATTCAGTCCCTCACGATAGGTGTTTCTAGCACGTTCTTTTAATGATTCAGCCTCATTCGGTTTTAAGTTTTCTTCTGACAACTGTTCATAAACTTGACTAAGCATTAACCACAACTTTGGTGCCTGATTATATGTTAATGTAGCTTTTTGTAACATTTCTAAAGCTTTATTTAATTCACCTAGACACCATTCCAATCTAGCTGCTTTCATCCATACACGAGCTGTAGAAGCAGAAGCACAAGCTTTATCTAGTAATCGACGTGCACGTGCATA TTCTTTATTTTCTGACTCAAGTTTTACAGCAGCTAACCATATCTCCTCTGAATTGGGATTAGCTTCAAATGCACGAGCTAGAATAGAACGAGCTGCTGGAACATCACCAGCAAGCCAACGTGTTTTTGCTGCCATTG ] [+] EMBL CD201074 [ CAGTATAATGTGGGTTATGATTCAGTCCCTCACGATAGGTGTTTCTAGCACGTTCTTTTAATGATTCAGCCTCATTCGGTTTTAAGTTTTCTTCTGACAACTGTTCATAAACTTGACTAAGCATTAACCACAACTTTGGTGCCTGATTATATGTTAATGTAGCTTTTTGTAACATTTCTAAAGCTTTATTTAATTCACCTAGACACCATTCCAATCTAGCTGCTTTCATCCATACACGAGCTGTAGAAGCAGAAGCACAAGCTTTATCTAGTAATCGACGTGCACGTGCATA TTCTTTATTTTCTGACTCAAGTTTTACAGCAGCTAACCATATCTCCTCTGAATTGGGATTAGCTTCAAATGCACGAGCTGGAATAGAACGAGCTGCTGGAACATCACCAGCAAGCCAACGTGTTTTTGCTGCCATTG ] [+] EMBL CD201080 [ CAGTATAATGTGGGTTATGATTCAGTCCCTCACGATAGGTGTTTCTAGCACGTTCTTTTAATGATTCAGCCTCATTCGGTTTTAAGTTTTCTTCTGACAACTGTTCATAAACTTGACTAAGCATTAACCACAACTTTAGTGCCTGATTATATGTTAATGTAGCTTTTTGTAACATTTCTAAAGCTTTATTTAATTCACCTAGACACCATTCCAATCTAGCTGCTTTCATCCGTACACGAGCTGTAGAAGCAGAAGCACAAGCTTTATCTAGTAATCGACGTGCACGTGCATA TTCTTTATTTTCTGACTCAAGTTTTACAGCAGCTAACCATATCTCCTCTGAATTGGGATTAGCTTCAAATGCACGAGCTAGAATAGAACGAGCTGCTGGAACATCACCAGCAAGCCAACGTGTTTTTGCTGCCATTG ] [+] EMBL CD201099 [ CAGTATAATGTGGGTTATGATTCAGTCCCTCACGATAGGTGTTTCTAGCACGTTCTTTTAATGATTCAGCCTCATTCGGTTTTAAGTTTTCTTCTGACAACTGTTCATAAACTTGACTAAGCATTAACCACAACTTTGGTGCCTGATTATATGTTAATGTAGCTTTTTGTAACATTTCTAAAGCTTTATTTAATTCACCTAGACACCATTCCAATCTAGCTGCTTTCATCCATACACGAGCTGTAGAAGCAGAAGCACAAGCTTTATCTAGTAATCGACGTGCACGTGCATA TTCTTTATTTTCTGACTCAAGTTTTACAGCAGCTAACCATATCTCCTCTGAATTGGGATTAGCTTCAAATGCACGAGCTAGAATAGAACGAGCTGCTGGAACATCACCAGCAAGCCAACGTGTTTTTGCTGCCATTG ] [+] EMBL CD201131 [ CAGTATAATGTGGGTTATGATTCAGTCCCTCACGATAGGTGTTTCTAGCACGTTCTTTTAATGATTCAGCCTCATTCGGTTTTAAGTTTTCTTCTGACAACTGTTCATAAACTTGACTAAGCATTAACCACAACTTTGGTGCCTGATTATATGTTAATGTAGCTTTTTGTAACATTTCTAAAGCTTTATTTAATTCACCTAGACACCATTCCAATCTAGCTGCTTTCATCCATACACGAGCTGTAGAAGCAGAAGCACAAGCTTTATCTAGTAATCGACGTGCACGTGCATA TTCTTTATTTTCTGACTCAAGTGTTACAGCAGCTAACCATATCTCCTCTGAATTGGGATTAGCTTCAAATGCACGAGCTAGAATAGAACGAGCTGCTGGAACATCACCAGCAAGCCAAC ] [+] EMBL CD201054 [ CAGTATAATGTGGGTTATGATTCAGTCCCTCACGGTAGGTGTTTCTAGCACGTTCTTTTAATGATTCAGCCTCATTCGGTTTTAAGTTTTCTTCTGACAACTGTTCATAAACTTGATTAAGCATTAACCACAACTTTGGTGCCTGATTATATGTTAATGTAGCTTTTTGTAACATTTCTAAAGCTTTATTTAATTCACCTAGACACCATTCCAATCTAGCTGCTTTCATCCATACACGAGCTGTAGAAGCAGAAGCACAAGCTTTATCTAGTAATCGACGTGCACGTGCATA TTCTTTATTTTCTGACTCAAGTTTTACAGCAGCTAACCATATCTCCTCTGAATTGGGATTAGCTTCAAATGCACGAGCTAGAATAGAACGAGCTGCTGGAACATCACCAGCAAGCCAAC ] [+] EMBL CD201120 [ CAGTATAATGTGGGTTATGATTCAGTCCCTCACGATAGGTGTTTCTAGCACGTTCTTTTAATGATTCAGCCTCATTCGGTTTTAAGTTTTCTTCTGACAACTGTTCATAAACTTGACTAAGCATTAACCACAACTTTGGTGCCTGATTATATGTTAATGTAGCTTTTTGTAACATTTCTAAAGCTTTATTTAATTCACCTAGACACCATTCCAATCTAGCTGCTTTCATCCATACACGAGCTGTAGAAGCAGAAGCACAAGCTTTATCTAGTAATCGACGTGCACGTGCATA TTCTTTATTTTCTGACTCAAGTTTTACAGCAGCTAACCATATCTCCTCTGAATTGGGATTAGCTTCAAATGCACGAGCTAGAATAGAACGAGCTGCTGGAACATCACCAGCAAGCCAACGTGTTTTTGCTGCCATTG ] [-] EMBL CD164004 [ TCTGAATTGGGATTAGCTTCAAATGCACGAGATAGAATAGAACGAGGTGCTGGAACATCACCAGCATTCCAACGTGTTTTTGCTGCCATAAGCCCCCCCACTTTCGCTTGAGGACAATGACAACAGCTTGCGCAAAAGTTCTTGTAAAGTTTCTCTCGTTCCATGATTTCGTTCAAAATAAGCAGCACGTAGCCAGATACTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10043#0 GCTTTTTATTAAACCAAACACGATGTGTAAAACGAAAAATGAGTTGTCCTTTACGCGTAA 60 consensus_10043#1 -------GTTGGAC-ATTCTTGAAGTGCT---TTTGAAATAAGTGAATCA------GCTA 43 ** ** * * ** *** **** *** * * * consensus_10043#0 TGAATGCCAAAAGTTGGCTGGTAATAATTAT-TGACTTTTACAATACACAACATACGCTG 119 consensus_10043#1 CAGGTTTCAAA--TTAGCTCTTACTTCTAATCTGATAGCTTCCAACCATAAT-TCTGGTG 100 * **** ** *** ** * * ** *** * * * ** ** * * ** consensus_10043#0 CAGTTTTCTTCTGTTTGCGAGAATTATACAAATATAGGA-GCGAAGCACATAAATTCAAT 178 consensus_10043#1 TTTTAGGATTTTGTGAACGGGCCTTCTCCAAA-ATAGAACGTGCTTTAGTTAAATTACAT 159 * ** *** ** * ** * **** **** * * * * ****** ** consensus_10043#0 T-TGGTAAAACAATTGTTTCTG-CTGCGATTTTTAATAAATCTTTTGTTTTTAATCGC-C 235 consensus_10043#1 TGTCGTTCTTCAAATCTGGCCAATTGCAACCACAGAGCAGTATAATGTGGGTTATGATTC 219 * * ** *** * * * *** * * * * * *** * ** * consensus_10043#0 AGTTTTT-AGGATCTTTACTGATTTGGCACCATACTTCACCATGATGAGGTTCGGCAGTA 294 consensus_10043#1 AGTCCCTCACGATAGGTGTT--TCTAGCACGTTCTTTTA--ATGATTCAGCCTCATTCGG 275 *** * * *** * * * * **** * ** * ***** * consensus_10043#0 ACACAACGTCGGTATACTTCTTTCTGTTGATCTTCCGTCCCGTGTTGTAATTCAAATTTG 354 consensus_10043#1 TTTTAAGTTT--TCTTCTGACAACTGTTCATAAACTTGACTAAGCATTAACCACAACTTT 333 ** * * * ** ***** ** * * * *** ** ** consensus_10043#0 TAAAAGTAAGCCCATGCATCGCCAAGATCTGGTTCTAGTTTCACCGTTCT-TGTAAACCA 413 consensus_10043#1 GGTGCCTGATTATATGTTAATGTAGCTTTTTGTAACATTTCTAAAGCTTTATTTAATTCA 393 * * *** * * * ** * ** * * * * * *** ** consensus_10043#0 ATTACGAGCTTTCATGACC-AGCCGTTCACACCAAAACATTTTGGATACAGCTAGAAGTA 472 consensus_10043#1 CCTAGACACCATTCCAATCTAGCTGCTTTCATCCATACACGAGCTGTAGAAGCAGAAGCA 453 ** * * * * *** * * ** * * *** ** * ***** * consensus_10043#0 CCAGTGGATCATGTTCACATTTCTTCAAAGCGTCCACTGATTTGCTTTTACGTTGAGCTC 532 consensus_10043#1 CAAGCTTTATCTAGTAAT-CGACGTGCACGTGCATATTCTTTATTTTCTGACTCAAGTTT 512 * ** * * * * * * * * * * ** ** * * ** * consensus_10043#0 TAGGAGTCATAAATATTGCCTCATTCGGTTTTAAGTTTTCTTCTGACAACTGTTCATAAA 592 consensus_10043#1 TAC-AGCAGCTAACCATATCTCCTCTGAATTGGGATTAGCTTCAAATGCACGAGC-TAGA 570 ** ** ** * *** * * ** ** **** * * * ** * consensus_10043#0 CTTGAGTAAGCATTAACCACAACTTTGGT--GCC--TGATTATATGTTAATGTAGCTTTT 648 consensus_10043#1 ATAGAACGAGCTGCTGGAACATCACCAGCAAGCCAACGTGTTTTTGCTGCCATTGGCCCC 630 * ** *** *** * * *** * * * ** * * * consensus_10043#0 TGTAACATTTCTAAAGCTTTATTTAATTCACCTAGACACCA-TTCCAATCTAGCTGCTTT 707 consensus_10043#1 CCCACTTTCGCTTGAGGACAATGACAACAGCTTGCGCAAAAGTTCTTGTAAAGTTTCTCT 690 * * ** ** ** * * * ** * *** * ** * ** * consensus_10043#0 CATCCATACACGAGCTGTAGAAGCAGAAGCACA-AGCTTTATCTAGTAATCGACGTGCAC 766 consensus_10043#1 CGTTCCATGATTTCGTTCAAAATAAGCAGCACGTAGCCAGATACTTT------------- 737 * * * * * * ** ** ***** *** ** * consensus_10043#0 GTG 769 consensus_10043#1 --- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||