These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10045#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 711 fasta sequence [CTCAGTAGTTGATACAGGATTTTGTACGATGCTTAACGATGTTACAGTAGCTTGTAAACGTCTGAGATGAGTTGCTGAAGAATAAATGGGTACTGACTGAGCGTCATGGAAAAGGAGGGTTGGTGCACATGAGTTTAGGCCAACTGAACTGCTTGATGTCGAACATGATACAGCGCTAACGATAGAATTAGTCACCAAAGTACTCGTCAGAGAGTTGGTAGACGTGACTGGTATGCTAACACTCGGACCACCTAGTGGATTAGTAGGTAGAGCAGGAATTCTCTTGCGATTAAGTATTTTCGGTATGGTGAGACTACCAGTATAAACC-TTGCGAATAACTTTGCGCGGACTATGACGACGAAATGGCA-GGTTTTGAACAGCAC-CAACAATATAAAAGTTAGCTTCACGTTTTGAAACTCCATGACTGGAATTATTTGAGTTAGTATTTGAAGAGTTACTGATATGAATAGTCGAAGACTCTTGAGAAGTCACGTTAATGTGTTCGTCGTCCTTTACTGACGAAATGCGAGACAAGATTGTTGAGCGTTTATGTACATCTGTATTACTAGTTATATAGATCTCTTCTGACCTCGGTTTCTTGTCCGCATTATATCAGAAAAACGAGGACAGTCGCAAAAGTTTTGAAAAACAAGAATTTGACCGATAAATCTATTTTAGATACACGCAACACAGTAGCCAAATCGAAACCAA] [-] EMBL CD095415 [CTCAGTAGTTGATACAGGATTTTGTACGATGCTTAACGATGTTACAGTAGCTTGTAAACGTCTGAGATGAGTTGCTGAAGAATAAATGGGTACTGACTGAGCGTCATGGAAAAGGAGGGTTGGTGCACATGAGTTTAGGCCAACTGAACTGCTTGATGTCGAACATGATACAGCGCTAACGATAGAATTAGTCACCAAAGTACTCGTCAGAGAGTTGGTAGACGTGACTGGTAT ] [+] EMBL CD183064 [ GAGTTGCTGAAGAATAAATGGGTACTGACTGAGCGTCATGGAAAAGGAGGGTTGGTGCACATGAGTTTAGGCCAACTGAACTGCTTGATGTCGAACATGATACAGCGCTAACGATAGAATTAGTCACCAAAGTACTCGTCAGAGAGTTGGTAGACGTGACTGGTATGCTAACACTCGGACCGCCTAGTGGATTAGTAGGTAGAGCAGGAGTTCTCTTGCGATTAAGTATTTTCGGTATGGTGAGACTACCAGTATAAACC TTGCGAATAACTTTGCGCGGACTATGACGACGAAATGGCA GGTTTTGAACAGCACNNCAC ATAT AAAGTTAGCTTCAC ] [+] EMBL CD183155 [ tgggAGGAGGGTTGGTGCACATGAGTTTAGGCCAACTGAACTGCTTGATGTCGAACATGATACAGCGCTAACGATAGAATTAGTCACCAAAGTACTCGTCAGAGAGTTGGTAGACGTGACTGGTATGCTAACACTCGGACCACCTAGTGGATTAGTAGGTAGAGCAGGAATTCTCTTGCGATTAAGTATTTTCGGTATGGTGAGACTACCAGTATAAACCTTTGCGAATAACTGTGCGCGGACTATGACGACGAAAATGCAGGGTTTTGAACAGCAC CAACATTATAAAGGTTAGCTT ] [-] EMBL CD182918 [ AACTGCTTGATGTCGAACATGATACAGCGCTAACGATAGAATTAGTCACCAAAGTACTCGTCAGAGAGTTGGTAGACGTGACTGGTATGCTAACACTCGGACCACCTAGTGGATTAGTAGGTAGAGCAGGAATTCTCTTGCGATTAAGTATTTTCGGTATGGTGAGACTACCAGCATAAACC TTGCGAATAACTTTGCGCGGACTATGACGACGAAATGGCA GGTTTTGAACAGCAC CAACAATATAAAAGTTAGCTT ] [-] EMBL CD182976 [ AACTGCTTGATGTCGAACATGATACAGCGCTAACGATAGAATTAGTCACCAAAGTACTCGTCAGAGAGTTGGTAGACGTGACTGGTATGCTAACACTCGGACCACCTAGTGGATTAGTAGGTAGAGCAGGAATTCTCTTGCGATTAAGTATTTTCGGTATGGTGAGACTACCGGTATAAACC TTGCGAATAACTTTGCGCGGACTATGACGACGAAATGGCA GGTTTTGAACAGCAC CAACAATATAAAAGTTAGCTT ] [-] EMBL CD183107 [ AACTGCTTGATGTCGAACATGATACAGCGCTAACGATAGAATTAGTCACCAAAGTACTCGTCAGAGAGTTGGTAGACGTGACTGGTATGCTAACACTCGGACCACCTAGTGGATTAGTAGGTAGAGCAGGAATTCTCTTGCGATTAAGTATTTTCGGTATGGTGAGACTACCAGTATAAACC TTGCGAATAACTTTGCGCGGACTATGACGACGAAATGGCA GGTTTTGAACAGCAC CAACAATATAAAAGTTAGCTT ] [-] EMBL CD095055 [ CTAACGATAGAATTAGTCACCAAAGTACTCGTCAGAGAGTTGGTAGACGTGACTGGTATGCTAACACTCGGACCACCTAGTGGATTAGTAGGTAGAGCAGGAATTCTCTTGCGATTAAGTATTTTCGGTATGGTGAGACTACCAGTATAAACC TTGCGAATAACTTTGCGCGGACTATGACGACGAAATGGCA GGTTTTGAACAGCAC CAACAATATAAAAGTTAGCTTCACGTTTTGAAACTCCATGACTGGAATTATTTGAGTTAGTATTTGAAGAGTTACTGATATGAATAGTCGAAGACTCTTGAGAAGTCACGTTAATGTGTTCGTCGTCCTTTACTGACGAAATGCGAGACAAGATTGTTGAGCGTTTATGTACATCTGTATTACTAGTTATATAGATCTCTTCTGACCTCGGTTTCTTGTCCGCATTATATCAGAAAAACGAGGACAGTCGCAAAAGTTTTGAAAAACAAGAATTTGACCGATAAATCTATTTTAGATACACGCAACACAGTAGCCAAATCGAAACCAA] [-] EMBL CD183145 [ ACTCGTCAGAGAGTTGGTAGACGTGACTGGTATGCTAACACTCGGACCACCTAGTGGATTAGTAGGTAGAGCAGGAATTCTCTTGCGATTAAGTATTTTCGGTATGGTGAGACTACCAGTATAAACC TTGCGAATAACTTTGCGCGGACTATGACGACGAAATGGCA GGTTTTGAACAGCAC CAACAATATAAAAGTTAGCTT ] consensusID : consensus_10045#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 568 fasta sequence [TTGAGTTAGTATTTGAAGAGTTACTGATATGAATAGTCGAAGACTCTTGAGAAGTCACGTTAATGTGTTCGTCGTCCTTTACTGACGAAATGCGAGACAAGATTGTTGAGCGTTTATGTACATCTGTATTACTAGTTATATAGCTAAGTTCGGGTGGTAGACAAGAGCGATGAGTTTCTATCTTAGTCGAGCCAGAAGATGAGTTGACTTGCAGATGCCGAAGTGAAGCTTTATCAAGGGGTCCGAAAACAGAATAGTAATGTCCTGGTTTACTATCAGCACTATACAGAACATGATGACTGACTTTCCTGCTGACACTCAATTTTTCAAAGTGTTTATACCGGAGCGTTCCAGACTCCTCACAATCAGAATGGAACTCTCGTACATAATTTGCTGAGCGATGAACAAGTAAACCCGAATCACTTTGATATCCAACAAGCAACGAAGAATCACTTGAGTCTTTATAATGATGGAACTTACTTATATGACGTGAATGTGATAAATAAGAATGTCGTGAG-GCTAAA-CAAGAAATTCGCCTTGAACGATTGTGACTTTTGACTTTTTTCCA] [-] EMBL CD129043 [TTGAGTTAGTATTTGAAGAGTTACTGATATGAATAGTCGAAGACTCTTGAGAAGTCACGTTAATGTGTTCGTCGTCCTTTACTGACGAAATGCGAGACAAGATTGTTGAGCGTTTATGTACATCTGTATTACTAGTTATATAGCTAAGTTCGGGTGGTAGACAAGAGCGATGAGTTTCTATCTTAGTCGAGCCAGAAGATGAGTTGACTTGCAGATGCCGAAGTGAAGCTTTATCAAGGGGTCCGAAAACAGAATAGTAATGTCCTGGTTTACTATCAGCACTATACAGAACATGATGACTGACTTTCCTGCTGACACTCAATTTTTCAAAGTGTTTATACCGGAGCGTTCCAGACTCCTCACAATCAGAATGGAACTCTCGTACCTAATTTGCTGAGCGATGAACAAGTAAACCCGAATCACTTTGATATCCAACAAGCAACGAAGAATCACTTGAGTCTTTATAATGATGGAACCTACTTATATGACGTGAATGTGATAAATAAGAATGTCGTGAG GCTAAA CAAGAAATTCGCCTTGAACGATCGTGACTTTTGACTTTTTTCCA] [+] EMBL CD167920 [ ATATAGCTAAGTTCGGGTGGTAGACAAGAGCGATGAGTTTCTATCTTAGTCGAGCCAGAAGATGAGTTGACTTGCAGATGCCGAAGTGAAGCTTTACCAAGGGGTCCGAAAACAG ] [-] EMBL CD129032 [ CTTAGTCGAGCCAGAAGATGAGTTGACTTGCAGATGCCGAAGTGAAGCTTTATCAAGGGGTCCGAAAACAGAATAGTAATGTCCTGGTTTACTATCAGCACTATACAGAACATGATGACTGACTTTCCTGCTGACACTCAATTTTTCAAAGTGTTTATACCGGAGCGTTCCAGACTCCTCACAATCAGAATGGAACTCTCGTACATAATTTGCTGAGCGATGAACAAGTAAACCCGAATCACTTTGATATCCAACAAGCAACGAAGAATCACTTGAGTCTTTATAATGATGGAACTTACTTATATGACGTGAATGTGATAAATAAGAACGTCGTGAG GCTAAA CAAGAAATTCGCCTTGAACGATTGTGACTTTTGACTTTTTTCCA] [-] EMBL CD129153 [ CACAATCAGAATGGAACTCTCGTACATAATTTGCTGAGCGATGAACAAGTAAACCCGAATCACTTTGATATCCAACAAGCAACGAAGAATCACTTGAGTCTTTATAATGATGGAACTTACTTATATGACGTGAATGTGATAAATAAGAATGTCGTGAG GCTAAA CAAGAAATTCGCCTTGAACGATTGTGACTTTTGACTTTTTTCCA] [-] EMBL CD129022 [ CTTGAGTCTTTATAATGATGGAACTTACTTATATGACGTGAATGTGATAAATAAGAATGTCGTGAGTGCTAAACCAAGAAATatctgc ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10045#0 CTCAGTAGTTGATACAGGATTTTGTACGATGCTTAACGATGTTACAGTAGCTTGTAAACG 60 consensus_10045#1 --------TTGAGTTAGTATTTGAAGAGTTACT----GATATGA--ATAG-TCGAAGACT 45 **** ** **** * * ** *** * * *** * * * ** consensus_10045#0 TCTGAGATGAGTTGCTGAAGAATAAATGGGTACTGACTGAGCGTCATGGAAAAGGAGGGT 120 consensus_10045#1 CTTGAGAAGTCACGTTAATGTGTTCGTCGTCCTTTACTGA-CGAAATGCGAGAC-AAGAT 103 ***** * * * * * * * * * ***** ** *** * * * * * consensus_10045#0 TGGTGCACATGAGTTTAGGCCAACTGAACTGCTTGATGTCGAACATGATACAGC--GCTA 178 consensus_10045#1 TGTTGAGCGTTTATGTA---CATCTGTATTACTAGTTATATAGCTAAGTTCGGGTGGTAG 160 ** ** * * * ** ** *** * * ** * * * * * * * * * consensus_10045#0 ACGATAG-AATTAGTCACCAAAGTACTCG--TCAGAGAGTTGGTAGACGTGACTGGTATG 235 consensus_10045#1 ACAAGAGCGATGAGTTTCTATCTTAGTCGAGCCAGAAGATGAGTTGACTTG---CAGATG 217 ** * ** ** *** * * ** *** **** * ** *** ** *** consensus_10045#0 CTAACACTCGGACCACCTAGTGGATTAGTAGGTAGAGCAGGAATTCTCTTGCGATTAAGT 295 consensus_10045#1 CCGAAGTGAAGCTTTATCAAGGGGTCCGAAAACAGAATAGTAATGTCCT---GGTTTACT 274 * * * * ** * * * *** ** *** ** * ** * * consensus_10045#0 ATTTTCGGTATGGTGAGACTACCAGTATAAACCTTGCGAATAACTTTGCGCGGACTATGA 355 consensus_10045#1 ATCAGCACTATAC--AGAACATGATGACTGACTTTCCTGCTGACACTCAATTTTTCAAAG 332 ** * *** *** * * * ** ** * * ** * * consensus_10045#0 CGACGAAATGGCAG-GTTTTGAACAGC--ACCAACAATATAAAAGTTAGCTTCACGTTTT 412 consensus_10045#1 TGTTTATACCGGAGCGTTCCAGACTCCTCACAATCAGAATGGAACTCTCGTACATAATTT 392 * * * * ** *** ** * ** * ** ** ** * * ** *** consensus_10045#0 GAAACTCCATGACTGGAATTATTTGAGTTAGTATTTGAAGAGTTACTGATATGAATAGTC 472 consensus_10045#1 GCTGAGCGATGAACAAGTAAACCCGAATCACT--TTGA----TATCCAACAAGCAACGAA 446 * * **** * ** * * * **** * * * * * * * consensus_10045#0 GAAGACTCTTGAGAAGTCACGTTAATGTGTTCGTCGTCCTTTACTGACGAAATGCGAGAC 532 consensus_10045#1 GAAT-CACTTGAGTCTTTATAATGATG-GAACTTACTTATATGACGTGAATGTGATAAAT 504 *** * ****** * * * *** * * * * * * * * ** * * consensus_10045#0 AAGATTGTTGAGCGTTTATGTACATCTGTATTACTAGTTATATAGATCTCTTCTGACCTC 592 consensus_10045#1 AAGAATGTCGTGAGGCTAAACAAGA---------AATTCGCCTTGAACGATTGTGACTTT 555 **** *** * * * ** * * * * ** * ** **** * consensus_10045#0 GGTTTCTTGTCCGCATTATATCAGAAAAACGAGGACAGTCGCAAAAGTTTTGAAAAACAA 652 consensus_10045#1 TGACTTTTTTCCA----------------------------------------------- 568 * * ** *** consensus_10045#0 GAATTTGACCGATAAATCTATTTTAGATACACGCAACACAGTAGCCAAATCGAAACCAA 711 consensus_10045#1 ----------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||