These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10048#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1129 fasta sequence [CGTGCTTCAGTCTCCTTCCTTTNTAATTCGTTAATTTCTTGTTTCTTATCTGATTTCTCAACATACCATGTTTTACAATTCAATGGGAAGGGAGCTACTTCGATTGAAATTTCTATGGGCAGTGATGTTATATTGTTATCACTGTCTTTTTCATGTGTGTTTGGTTTTTGAATAATTTCTTACTGGATCATTACTACTCTGTGATGAGCACGGGAATTTTGAGCGATACAATTGTTATACCAAAGTAAAATATACTAAACATATTAAAGAAACTGTTTCAAGGAAATGAAATTGCATTTCTCCCTCCCTCTACTGTTCATCGTCATCAACGCTAGACATCTAAAAACAATATCATATCACCCGGTCCACATATTAGGCTCCTATTGTTATCCAATCTACATCACAGTGTTTAGTTCTTTTATCTCCGTCCTGTTCCCGCCCCCATTCTCCAACTCAAATCACACATGCTAACCTTGGTGTTGATTGTAGACACCAGCTAATTGTCAGTGATATATTCTTTGTCTCCTCTGCTATTGATTATTTCATAAATGTTTACTTGCCATTTTGTTATATTCTTTCCAATAAGGGAATTTATTCCCATTTCTACATTTATGTGTAACATCACTCAGTTTTTTTATTAAAGAAATACAAAATAAGACTTTTCAAGTCCATCATATTTACCGCCGCCACTCCTCTTACTCATCTACTTGTGTTAACACAAAAAGGGAAAAAATTCTAATTCTCGAAAAAATATACAGGTAGGCAAAATGGTCTGGAATACGGCGTTTAGTACGTATTATTATTGTTCATTTTTGTTAACGTTATTTATCATCATCAGTCTACTTGTTCTTTTACCAAACACTCTACTCTTCTTGCCTTTTTTATTCACTAATTGTTGCGATTCCGCGGTAGTTTTCCTCAAACTTTATTTGTTGTCTGTTCTCCATCTCTCGCTCCCTGTGTGTGTGTGTGTGTGCGTATGCATACTTTCGCGCACATTTGTGTATGTTTATCGGTGTGGNGATATTCTTTTTACATAAATTGACGATTATGGTGGTATTACGATTNCGGANANTCNTNNCATTTCTCTCATATTTTTGNCAAATGTNGTAATGCTTTTTGGTGACTG] [-] EMBL CD066946 [CGTGCTTCAGTCTCCTTCCTTTNTAATTCGTTAATTTCTTGTTTCTTATCTGATTTCTCAACATACCATGTTTTACAATTCAATGGGAAGGGAGCTACTTCGATTGAAATTTCTATGGGCAGTGATGTTATATTGTTATCACTGTCTTTTTCATGTGTGTTTGGTTTTTGAATAATTTCTTACTGGATCATTACTACTCTGTGATGAGCACGGGAATTTTGAGCGATACAATTGTTATACCAAAGTAAAATATACTAAACATATTAAAGAAACTGTTTCAAGGAAATGAAATTGCATTTCTCCCTCCCTCTACTGTTCATCGTCATCAACGCTAGACATCTAAAAACAATATCATATCACCCGGTCCACATATTAGGCTCCTATTGTTATCCAATCTACATCACAGTGTTTGGTTCct ] [+] EMBL CD196677 [ CCTTCCTTTCTAATTCGTTTATTTCTTGTTTCTTATCTGATTTCTCAACATACCATGTTTTACAATTCAATGGGAAGGGAGCTACTTCGATTGAAATTTCTATGGGCAGTGATGTTATATTGTTATCACTGTCTTTTTCATGTGTGTTTGGTTTTTGAATAATTTCTTACTGGATCATTACTACTCTGTGATGAGCACGGGAATTTTGAGCGATACAATTGTTATACCAAAGTAAAATATACTAAACATATTAAAGAAACTGTTTCAAGGAAATGAAATTGCATTTCTCCCTCCCTCTACTGTTCATCGTCATCAACGCTAGACATCTAAAAACAATATCATATCACCCGGTCCACATATTAGGCTCCTATTGTTATCCAATCTACATCACAGTGTTTAGTTCTTTTATCTCCGTCCTGTTCCCGCCCCCATTCTCCAACTCAAATCACACATGC ] [+] EMBL CD078438 [ GGGAAGGGAGCTACTTCGATTGAAATTTCTATGGGCAGCGATGTTATATTGTTATCACTGTCTTTTTCATGTGTGTTCGGATTTTGAATAATTTCTTACTGGATCATTACTACTCTGCGATGAGCACGGAAACTTTGAACGATACACTTGTTATACCAGAGCAGAATATACTAACCATATTAAATAAACTGTTTCAAGGAAATGAAATTGCATTTCTCCCTCCCTCTACTGCTCATCGGCATCAACGCTAGACATCTAAAAACAATATCATATCACCCGGTCCACATATTAGGCTCCTATTGTTATCCAATCTACATCACAGTGATTAGTTCTTTTATCTCCGTCCTGTTCCCGCCCCCATTCTCCAACTCAAATCACACATGCTAACCTTGGTGTTGATTGTAGACACCAACTAATTGTCAGTGATATATTCTTTGTCTCCTCTGCTATTGATTATTTCATAAATGATTACTTGCCATTTTGTTATATTCTTTCCAATAAGGGAATTTATTCCCATTTCTACATTTATGTGTAACATCACTCAGTTTTTTTATTAAAGAAATACAATAT ] [+] EMBL CD155711 [ GCTACTTCGATTGAAGTTTCTATGGGCAGTGATGTTATATTGTTATCACTGTCTTTTTCATGTGTGTTTGGTTTTTGAATAATTTCTTACTGGATCATTACTACTCTGTGATGAGCACGGGAATTTTGAGCGATACAATTGTTATACCAAAGTAAAATATACTAAACATATTAAAGAAACTGTTTCAAGGAAATGAAATTGCATTTCTCCCTCCCTCTACTGTTCATCGTCATCAACGCTAGACATCTAAAAACAATATCATATCACCCGGTCC ] [+] EMBL CD187155 [ TGTGTGTTTGGTTTTTGAATAATTTCTTACTGGATCATTACTACTCTGTGATGAGCACGGGAATTTTGAGCGATACAATTGTTATACCAAAGTAAAATATACTAAACATATTAAAGAAACTGTTTCAAGGAAATGAAATTGCATTTCTCCCTCCCTCTACTGTTCATCGTCATCAACGCTAGACATCTAAAAACAATATCATATCACCCGGTCCACATATTAGGCTCCTATTGTTATCCAATCTACATCACAGTGTTTAGTTCTTTTATCTCCGTCCTGTTCCCGCCCCCATTCTCCAACTCGAATCACACATGCTAACCTTGGTGTTGATTGTAGACACCAGCTAATT ] [-] EMBL CD088835 [ TACTGTTCATCGTCATCAACGCTAGACATCTAAAAACAATATCATATCACCCGGTCCACATATTAGGCTCCTATTGTTATCCAATCTGCATCACAGTGTTTAGTTCTTTTATCTCCGTCCTGTTCCCGCCCCCATTCTCCAACCCAAATCACACATGCTAACCTTGGTGTTGATTGTAGACACCAGCTAATTGTCAGTGATATATTCTTTGTCTCCTCTGCTATTGATTATTTCATAAATGTTTACTTGCCATTTTGTTATATTCTTTCCAATAAGGGAATTTATTCCCATTTCTACATTTATGTGTAACGTCACTCAGTTTTTTTATTAAAGAAATACAAAATAAGACTTTTCAAGTCCATCATATTTACCGCCGCCACTCCTCTTACTCATCTACTTGTGTTAACACAAAAAGGGAAAAAATTCTAATTCTCGAAAAAATATACAGGTAGGCAAAATGGTCTGGAATACGGCGTTTAGTACGTATTATTATTGTTCATTTTTGTTAACGTTATTTATCATCATCAGTCTTCTTGTTCTTTTACCAAACAC ] [-] EMBL CD088723 [ TGTTCATCGTCATCAACGCTAGACATCTAAAAACAATATCATATCACCCGGTCCACATATTAGGCTCCTATTGTTATCCAATCTACATCACAGTGTTTAGTTCTTTTATCTCCGTCCTGTTCCCGCCCCCATTCTCCAACTCAAATCACACATGCTAACCTTGGTGTTGATTGTAGACACCAGCTAATTGTCAGTGATATATTCTTTGTCTCCTCTGCTATTGATTATTTCATAAATGTTTACTTGCCATTTTGTTATATTCTTTCCAATAAGGGAATTTATTCCCATTTCTACATTTATGTGTAACATCACTCAGTTTTTTTATTAAAGAAATACAAAATAAGACTTTTCAAGTCCATCATATTTACCGCCGCCACTCCTCTTACTCATCTACTTGTGTTAACACAAAAAGGGAAAAAATTCTAATTCTCGAAAAAATATACAGGTAGGCAAAATGGTCTGGAATACGGCGTTTAGTACGTATTATTATTGTTCATTTTTGTTAACGTTATTTATCATCATCAGTCTACTTGTTCTTTTACCAAACAC ] [-] EMBL CD088734 [ TGTTCATCGTCATCAACGCTAGACATCTAAAAACAATATCATATCACCCGGTCCACATATTAGGCTCCTATTGTTATCCAATCTACATCACAGTGTTTAGTTCTTTTATCTCCGTCCTGTTCCCGCCCCCATTCTCCAACCCAAATCACACATGCTAACCTTGGTGTTGATTGTAGACACCAGCTAATTGTCAGTGATATATCCTTTGTCTCCTCTGCTATTGATTATTTCATAAATGTTTACTTGCCATTTTGTTATATTCTTTCCAATAAGGGAATTTATTCCCATTTCTACATTTATGTGTAACATCACTCAGTTTTTTTATTAAAGAAATACAAAATAAGACTTTTCAAGTCCATCATATTTACCGCCGCCACTCCTCTTACTCATCTACTTGTGTTAACACAAAAAGGGAAAAAATTCTAATTCTCGAAAAAATATACAGGTAGGCAAAATGGTCTGGAATACGGCGTTTAGTACGTATTATTATTGTTCATTTTTGTTAACGTTATTTATCATCATCAGTCTACTTGTTCTTTTACCAAACAC ] [-] EMBL CD196389 [ TCAAATCACACATGCTAACCTTGGTGTTGATTGTAGACACCAGCTAATTGTCAGTGATATATTCTTTGTCTCCTCTGCTATTGATGATTTCATAAATGTTTACTTGCCATTTTGTTATATTCTTTCCAATAAGGGAATTTATTCCCATTTCTACATTTATGTGTAACATCACTCAGTTTTTTTATTAAAGAAATACAAAATAAGACTTTTCAAGTCCATCATATTTACCGCCGCCACTCCTCTTACTCATCTACTTGTGTTAACACAAAAAGGGAAAAAATTCTAATTCTCGAAAAAATATACAGGTAGGCAAAATGGTCTGGAATACGGCGTTTAGTACGTATTATTATTGTTCATTTTTGCTAACGTTATTTATCATCATCAGTCTACTTGTTCTTTTACCA ] [+] EMBL CD193900 [ ACGTATTATTATTGTTCATCTTTGTTAACGTTATTTATCATCATCAGTCTACTTGTTCTTTTACCAAACACTCTACTCTTCTTGCCTTTTTTATTCACTAATTGTTGCGATTCCGCGGTAGTTTTCCTCAAACTTTATTTGTTGTCTGTTCTCCATCTCTCGCTCCCTGTGTGTGTGTGTGTGTGCGTATGCATACTTTCGCGCACATTTGTGTATGTTTATCGGTGTGGNGATATTCTTTTTACATAAATTGACGATTATGGTGGTATTACGATTNCGGANANTCNTNNCATTTCTCTCATATTTTTGNCAAATGTNGTAATGCTTTTTGGTGACTG] consensusID : consensus_10048#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 280 fasta sequence [TTGTTGCGATTCCGCGGTAGTTTTCCTCAAACTTTATTTGTTGGCTGTTCTTCATCTCTCGCTCCCTGTGTGTGGGTGTGTGTGCGTATGCGTACTTTCGCGCACATTTGGGTATGTTTATCTGTTTGGCGATATTCTTTTTACAATAAATTGACGATTATGGTGGTATTAACGATTTCGGATAATTCTTCATTTTCTCTTCATATTTTTGTCAAATGTGTTAATGCTTTTGTGTGTGTGTAAGTATGGATAAAATATAAATCATCTTTGAACCCAGTAA] [+] EMBL CD078605 [TTGTTGCGATTCCGCGGTAGTTTTCCTCAAACTTTATTTGTTGGCTGTTCTTCATCTCTCGCTCCCTGTGTGTGGGTGTGTGTGCGTATGCGTACTTTCGCGCACATTTGGGTATGTTTATCTGTTTGGCGATATTCTTTTTACAATAAATTGACGATTATGGGGGTATTAACGATTTCGGATAATTCTTCATTTTCTCT ] [-] EMBL CD073069 [ TGTTGCGATTCCGCGGTAGTTTTCCTCAAACTTTATTTGTTGTCTGTTCTTCATCTCTCGCTCCCTGTGTGTGTGTGTGTGTGCGTATGCGTACTTTCGCGCACATTTGTGTATGTTTATCTGTTTGGTAATATTCTTTTTACAATAAATTGACGATTATGGTGGTATTAACGATTTCGGATAATTCTTCATTTTCTCTTCATATTTTTGTCAAATGTGTTAATGCTTTTGTGTGTGTGTAAGTATGGATAAAATATAAATCATCT ] [-] EMBL CD077176 [ TTTATCTGTTTGGGGATATTCTTTTTACAATAAATTGACGATTATGGTGGTATCAACAATTTCGGATAATTCTTCATTTTCTCTTCAAATTTTTGTCAAATGTGTTAACGCTTTTGTGTGTGTGTAAGTATGGATAAAATATAAATCGTCTTTGAACCCAGTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10048#0 CGTGCTTCAGTCTCCTTCCTTTNTAATTCGTTAATTTCTTGTTTCTTATCTGATTTCTCA 60 consensus_10048#1 ------------------------------------------------------------ consensus_10048#0 ACATACCATGTTTTACAATTCAATGGGAAGGGAGCTACTTCGATTGAAATTTCTATGGGC 120 consensus_10048#1 ------------------------------------------------------------ consensus_10048#0 AGTGATGTTATATTGTTATCACTGTCTTTTTCATGTGTGTTTGGTTTTTGAATAATTTCT 180 consensus_10048#1 ------------------------------------------------------------ consensus_10048#0 TACTGGATCATTACTACTCTGTGATGAGCACGGGAATTTTGAGCGATACAATTGTTATAC 240 consensus_10048#1 ------------------------------------------------------------ consensus_10048#0 CAAAGTAAAATATACTAAACATATTAAAGAAACTGTTTCAAGGAAATGAAATTGCATTTC 300 consensus_10048#1 ------------------------------------------------------------ consensus_10048#0 TCCCTCCCTCTACTGTTCATCGTCATCAACGCTAGACATCTAAAAACAATATCATATCAC 360 consensus_10048#1 ------------------------------------------------------------ consensus_10048#0 CCGGTCCACATATTAGGCTCCTATTGTTATCCAATCTACATCACAGTGTTTAGTTCTTTT 420 consensus_10048#1 ------------------------------------------------------------ consensus_10048#0 ATCTCCGTCCTGTTCCCGCCCCCATTCTCCAACTCAAATCACACATGCTAACCTTGGTGT 480 consensus_10048#1 ------------------------------------------------------------ consensus_10048#0 TGATTGTAGACACCAGCTAATTGTCAGTGATATATTCTTTGTCTCCTCTGCTATTGATTA 540 consensus_10048#1 ------------------------------------------------------------ consensus_10048#0 TTTCATAAATGTTTACTTGCCATTTTGTTATATTCTTTCCAATAAGGGAATTTATTCCCA 600 consensus_10048#1 ------------------------------------------------------------ consensus_10048#0 TTTCTACATTTATGTGTAACATCACTCAGTTTTTTTATTAAAGAAATACAAAATAAGACT 660 consensus_10048#1 ------------------------------------------------------------ consensus_10048#0 TTTCAAGTCCATCATATTTACCGCCGCCACTCCTCTTACTCATCTACTTGTGTTAACACA 720 consensus_10048#1 ------------------------------------------------------------ consensus_10048#0 AAAAGGGAAAAAATTCTAATTCTCGAAAAAATATACAGGTAGGCAAAATGGTCTGGAATA 780 consensus_10048#1 ------------------------------------------------------------ consensus_10048#0 CGGCGTTTAGTACGTATTATTATTGTTCATTTTTGTTAACGTTATTTATCATCATCAGTC 840 consensus_10048#1 ------------------------------------------------------------ consensus_10048#0 TACTTGTTCTTTTACCAAACACTCTACTCTTCTTGCCTTTTTTATTCACTAATTGTTGCG 900 consensus_10048#1 ----------------------------------------------------TTGTTGCG 8 ******** consensus_10048#0 ATTCCGCGGTAGTTTTCCTCAAACTTTATTTGTTGTCTGTTCTCCATCTCTCGCTCCCTG 960 consensus_10048#1 ATTCCGCGGTAGTTTTCCTCAAACTTTATTTGTTGGCTGTTCTTCATCTCTCGCTCCCTG 68 *********************************** ******* **************** consensus_10048#0 TGTGTGTGTGTGTGTGCGTATGCATACTTTCGCGCACATTTGTGTATGTTTATCGGTGTG 1020 consensus_10048#1 TGTGTGGGTGTGTGTGCGTATGCGTACTTTCGCGCACATTTGGGTATGTTTATCTGTTTG 128 ****** **************** ****************** *********** ** ** consensus_10048#0 GNGATATTCTTTTTACA-TAAATTGACGATTATGGTGGTATTA-CGATTNCGGANANTCN 1078 consensus_10048#1 GCGATATTCTTTTTACAATAAATTGACGATTATGGTGGTATTAACGATTTCGGATAATTC 188 * *************** ************************* ***** **** * * consensus_10048#0 TNNCATTTCTCT-CATATTTTTGNCAAATGTNGTAATGCTTTTTGGTGACTG-------- 1129 consensus_10048#1 TTCATTTTCTCTTCATATTTTTGTCAAATGTGTTAATGCTTTTGTGTGTGTGTAAGTATG 248 * ******* ********** ******* ********** *** ** consensus_10048#0 -------------------------------- consensus_10048#1 GATAAAATATAAATCATCTTTGAACCCAGTAA 280 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||