These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10051#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 959 fasta sequence [ATTAAAACAAAATCAGGTTTATTCTTTAGAACAACTGCAATATCATGAAGAACTGATTCAAAAACAGTTTACCCAGTTAAATAAATATAAAGAACAATTAGACTGCTATAAAGAGACGACTGCGAGTCTGGAAAGTTACATTTTGGAATTACAAGTTAAGTTAACACTTATTCATGAACAATATGACCAAGAGTTAAAGCGTTTGGGTGTTAATCAATCACGATTGACCGCTCCAACATTTCGTAATATTCCAAATCGATTTCAACAAATACATGATATCAATGAAAAACCTTCAAAAATCTCATCATTTCTAAATCCGTCAATAAAGCTCATTCATAATGCTGCTTGCGCTAGTGCTAGTACCAGCTATCAAATGCCATCAATCTTATCAGTAGACCAAGGTGTTGATGCATTAAGCTTGGAGGATTCTTCAAATCCTGACGTAGATAGCAACAATAATCACTCAACATCAACATCAATTGTTGAGCATATTCCCAGTGAATCGAAACGATATCGTTCAGTTAAATTTACCGAATCTAATTCAAATATTAAAA-AAATCGACCAAGATTCATGTGTTTTGCCTGTGGATATATCAAACAGAAAGTCTAATACAAAACGTCTACCTTTACCCATAAGAGCACGTTCTAATTCTCCAACTACTACTACTACTACTACTAATAGTAGTAGTTATCCTAGTTCAATAAGTGAATCATCTCAGCAAAAATATATTAAATCAAAGAGTCCATTAAAATCAAATAGTTCCGGTCAAACATTTCATCAGAAATCAAAAATGCTTGTTAGCGTTCAAGAAATACCGTCTGAACGTTTCATCCTGCCGGATAATTCATATTCTACTGTATCTTTTCCTAATAATAGTTCACCAAAAACTCTCGACAGTATGACAGTTGTTGTAAAACCAAGAAGTCATAGCTTATTCTCTTGTGACGTCCCGCATATAT] [+] EMBL CD169555 [ATTAAAACAAAATCAGGTTTATTCTTTAGAACAACTGCAATATCATGAAGAACTGATTCAAAAACAGTTTACCCAGTTAAATAAATATAAAGAACAATTAGACTGCTATAAAGAGACGACTGCGAGTCTGGAAAGTTACATTTTGGAATTACAAGTTAAGTTAACACTTATTCATGAACAATATGACCAAGAGTTAAAGCGTTTGGGTGTTAATCAATCACGATTGACCGCTCCAACATTTCGTAATATTCCAAATCGATTTCAACAAATACATGATATCAATGAAAAACCTTCAAAAATCTCATCATTTCTAAATCCGTCAATAAAGCTCATTCATAATGCTGCTTGCGCTAGTGCTAGTACCAGCTATCAAATGCCATCAATCTTATCAGTAGACCAAGGTGTTGATGCATTAAGCTTGGAGGATTCTTCAAATCCTGACGTAGATAGCAACAATAATCACTCAACATCAACATCAATTGTTGAGCATATTCCCAGTGAATCGAAACGATATCGTTCAGTTAAATTTACCGAATCTAATTCAAATATTAAAA AAAT ] [+] EMBL CD169634 [ATTAAAACAAAATCAGGTTTATTCTTTAGAACAACTGCAATATCATGAAGAACTGATTCAAAAACAGTTTACCCAGTTAAATAAATATAAAGAACAATTAGACTGCTATAAAGAGACGACTGCGAGTCTGGAAAGTTACATTTTGGAATTACAAGTTAAGTTAACACTTATTCATGAACAATATGACCAAGAGTTAAAGCGTTTGGGTGTTAATCAATCACGATTGACCGCTCCACCATTTCGTAATATTCCAAATCGATTTCAACAAATACATGATATCAATGAAAAACCTTCAAAAATCTCATCATTTCTAAATCCGTCAATAAAGCTCATTCATAATGCTGCTTGCGCTAGTGCTAGTACCAGCTATCAAATGCCATCAATCTTATCAGTAGACCAAGGTGTTGATGCATTAAGCTTGGAGGATTCTTCAAATCCTGACGTAGATAGCAACAATAATCACTCAACATCAACATCAATTGTTGAGCATATTCCCAGTGAATCGAAACGATATCGTTCAGTTAAATTTACCGAATCTAATTCAAATATTAAAA AAAT ] [+] EMBL CD159622 [ ATATAAAGAACAATTAGACTGCTATAAAGAGACGACTGCGAGTCTGGAAAGTTACATTTTGGAATTACAAGTTAAGTTAACACTTATTCATGAACAATATGACCAAGAGTTAAAGCGTTTGGGTGTTAATCAATCACGATTGACCGCTCCAACATTTCGTAATATTCCAAATCGATTTCAACAAATACATGATATCAATGAAAAACCTTCAAAAATCTCATCATCTCTAAATCCGTCAATAAAGCTCACTCATAATGCTGCTTGCGCTAGTGCTAGTACCAGCTATCAAATGCCATCAATCTTATCAGTAGACCAAGGTGTTGATGCATTAAGCTTGGAGGATTCTTCAAATCCTGACGTAAATAGCAACAATAATCACTCAACATCAACATCAATTGTTGAGCATATTC ] [+] EMBL CD140334 [ TTGGGTGTTAATCAATCACGATTGACCGCTCCAACATTTCGTAATATTCCAAATCGATTTCAACAAATACATGATATCAATGAAAAACCTTCAAAAATCTCATCATTTCTAAATCCGTCAATAAAGCTCATTCATAATGCTGCTTGCGCTAGTGCTAGTACCAGCTATCAAATGCCATCAATCTTATCAGTAGACCAAGGTGTTGATGCATTAAGCTTGGAGGATTCTTCAAATCCTGACGTAGATAGCAACAATAATCACTCAACATCAACATCAATTGTTGAGCATATTCCCAGTGAATCGAAACGATATCGTTCAGTTAAATTTACCGAATCCAATTCAAATATTAAAA AAATCGACCAAGAT ] [+] EMBL CD140443 [ TTGGGTGTTAATCAATCACGATTGACCGCTCCAACATTTCGTAATATTCCAAATCGATTTCAACAAATACATGATATCAATGAAAAACCTTCAAAAATCTCATCATTTCTAAATCCGTCAATAAAGCTCATTCATAATGCTGCTTGCGCTAGTGCTAGTACCAGCTATCAAATGCCATCAATCTTATCAGTAGACCAAGGTGTTGATGCATTAAGCTTGGAGGATTCTTCAAATCCTGACGTAGATAGCAACAATAATCACTCAACATCAACATCAATTGTTGAGCATATTCCCAGTGAATCGAAACGATATCGTTCAGTTAAATTTACCGAATCTAATTCAAATATTAAAA AAATCGACCAAGATTCATGTGTTTTGCCTGTGGATACATCAAACAGAAAGTCTAATACAA ] [+] EMBL CD140467 [ TTGGGTGTTACTCAATCACGATTGACCGCTCCAACATTTCGTAATATTCCAAATCGATTTCAACAAATACATGATATCAATGAAAAACCTTCAAAAATCTCATCATTTCTAAATCCGTCAATAAAGCTCATTCATAATGCTGCTTGCGCTAGTGCTAGTACCAGCTATCAAATGCCATCAATCTTATCAGTAGACCAAGGTGTTGATGCATTAAGCTTGGAGGATTCTTCAAATCCTGACGTAGATAGCAACAATAATCACTCAACATCAACATCAATTGTTGAGCATATTCCCAGTGAATCGAAACGATATCGTTCAGTTAAATCTACCGAATCCAATTCAAATATTAAAA AAATCGACCAAGATTCATGTGTTTTGCCTGTGGATATATCCAACAGAAAGTCTAATACAAAAC ] [+] EMBL CD140418 [ TTGGGTGTTAATCAATCACGATTGACCGCTCCAACATTTCGTAATATTCCAAATCGATTTCAACAAATACATGATATCAATGAAAAACCTTCAAAAATCTCATCATTTCTAAATCCGTCAATAAAGCTCATTCATAATGCTGCTTGCGCTAGTGCTAGTACCAGCTATCAAATGCCATCAATCTTATCAGTAGACCAAGGTGTTGATGCATTAAGCTTGGAGGATTCTTCAAATCCTGACGTAGATAGCAACAATAATCACTCAACATCAACATCAATTGTTGAGCATATTCCCAGTGAATCGAAACGATATCGTTCAGTTAAATTTACCGAATCCAATTCAAATATTAAAA AAATCGACCAAGATTCATGTGTTTTGCCTGTGGATATATCAAACAGAAAGTCTAATACA ] [-] EMBL CD196895 [ ATCAATTGTTGAGCATATTCCCAGTGAATCGAAACGATATCGTTCAGTTAAATTTACCGAATCTAATTCAAATATTAAAA AAATCGACCAAGATCCATGTGTTTTGCCTGTGGATATATCAAACAGAAAGTCTAATACAAAACGTCTACCTTTACCCATAAGAGCACGTTCTAATTCTCCAACTACTACTACTACTACTACTAATAGTAGTAGTTATCCTAGTTCAATAAGTGAATCATCTCAGCAAAAATATATTAAATCAAAGAGTCCATTAAAATCAAATAGTTCCGGTCAAACATTTCATCAGAAATCAAAGATGCTTGTTAGCGTTCAAGAAATACCGTCTGAACGTTTCATCCTGCCGGATAATACATATTCTACTGTATCCTTTCCTAATAATAGTTCACCAAAAACTCTCGACAGTATGACAGTTGTTGTAAAACCAAGAAGTCA ] [-] EMBL CD196349 [ ATTGTTGAGCATATTCCCAGTGAATCGAAACGATATCGTTCAGTTAAATTTACCGAATCTAATTCAAATATTAAAA AAATCGACCAAGATTCATGTGTTTTGCCTGTGGATATATCAAACAGAAAGTCTAATACAAAACGTCTACCTTTACCCATAAGAGCACGTTCTAATTCTC CTACTACTACTACTACTAATAGTAGTAGTTATCCTAGTTCAATAAGTGAATCATCTCAGCAAAAATATATTAAATCAAAGAGTCCATTAAAATCAAATAGTTCCGGTCAAACATTTCATCAGAAATCAAAAATGCTTGTTAGCGTTCAAGAAATACCGTCTGAACGTTTCATCCTGCCGGATAATTCATATTCTACTGTATCTTTTCCTAATAATAGTTCACCAAAAACTCTCGACAGTATGACAGTTGTTGTAAAACCAAGAAGTCA ] [-] EMBL CD196664 [ CCCAGTGAATCGAAACGATATCGTTCAGTTAAATTTACCGAATCTAATTCAAATATTAAAAGAAATCGACCAAGATCCATGTGTTTTGCCTGTGGATATATCAAACAGAAAGTCTAATACAAAACGTCTACCTTGACCCATAAGAGCACGTTCTAATTCTCCAACTACTACTACTACTACTACTAATAGTAGTAGTTATCCTAGTTCAATAAGTGAATCATCTCAGCAAAAATATATTAAATCAAAGAGTCCATTAAAATCAAATAGTTCCGGTCAAACATTTCATCAGAAATCAAAAATGCTTGTTAGCGTTCAAGAAATACCGTCTGAACGTTTCATCCTGCCGGATAATTCATATTCTACTGTATCTTTTCCTAATAATAGTTCACCAAAAACTCTCGACAGTATGACAGTTGTTGTAAAACCAAGAAGTCA ] [-] EMBL CD196534 [ TCAGTTAAATTTACCGAATCTAATTCAAATATTAAAA AAATCGACCAAGATCCATGTGTTTTGCCTGTGGATATATCAAACAGAAAGTCTAATACAAAACGTCTACCTTTACCCATAAGAGCACGTTCTAATTCTCCAACTACTACTACTACTACTACTAATAGTAGTAGTTATCCTAGTTCAATAAGTGAATCATCTCAGCAAAAATATATTAAATCAAAGAGTCCATTAAAATCAAATAGTTCCGGTCAAACATTTCATCAGAAATCCCAAATGCTTGTTAGCGTTCAAGAAATACCGTCTGAACGTTTCATCCTGCCGGATAATTCATATTCTACTGTATCTTTTCCTAATAATAGTTCACCAAAAACTCTCGACAGTATGACAGTTGTTGTAAAACCAAGAAGTCA ] [+] EMBL CD196436 [ ATCAAATAGTTCCGGTCAAACATTTCATCAGAAATCAAAAATGCTTGTTAGCGTTCAAGAAATACCGTCTGAACGTTACATCCTGCCGGATAATTCATATTCTACTGTATCTTTTCCTAATAATAGTTCACCAAAAACTCTCGACAGTATGACAGTTGTTGTAAAACCAAGAAGTCATAGCTTATTCTCTTGTGACGTCCCGCATATAT] consensusID : consensus_10051#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 398 fasta sequence [AAAAATAATGATAGAGACAATAAAACATCTGCAATACGACAACAACAAGAAGAACATGAAGAAACCATTTGAACAAAAATGAATCGGATCATCATGAATAAAGACAAAGTTCAAGCCTATTACTACTACCCTAACTACTACTACTAATAGTAGTAGTAGTTATCCTAGTTCAATAAGTGAATCATCTCAGCTAAAATATATTAAATCAAAGAGTCCATTAAAATCAAATAGTTCCGGTCAAACATTTCATCAGAAATCAAAATGCTTGTTAGCGTTCAAGAAATACCGTCTGAACGTTTCATCCTGCCGGATAATTCATATTCTACTGTATCTTTTCCTAATAATAGTTCACCAAAAACTCTCGACAGTATGACAGTTGTTGTAAAACCAAGAAGTCA] [-] EMBL CD196513 [AAAAATAATGATAGAGACAATAAAACATCTGCAATACGACAACAACAAGAAGAACATGAAGAAACCATTTGAACAAAAATGAATCGGATCATCATGAATAAAGACAAAGTTCAAGCCTATTACTACTACCCTAACTACTACTACTAATAGTAGTAGTAGTTATCCTAGTTCAATAAGTGAATCATCTCAGCTAAAATATATTAAATCAAAGAGTCCATTAAAATCAAATAGTTCCGGTCAAACATTTCATCAGAAATCAAAATGCTTGTTAGCGTTCAAGAAATACCGTCTGAACGTTTCATCCTGCCGGATAATTCATATTCTACTGTATCTTTTCCTAATAATAGTTCACCAAAAACTCTCGACAGTATGACAGTTGTTGTAAAACCAAGAAGTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10051#0 ATTAAAACAAAATCAGGTTTATTCTTTAGAACAACTGCAATATCATGAAGAACTGATTCA 60 consensus_10051#1 ------------------------------------------------------------ consensus_10051#0 AAAACAGTTTACCCAGTTAAATAAATATAAAGAACAATTAGACTGCTATAAAGAGACGAC 120 consensus_10051#1 ------------------------------------------------------------ consensus_10051#0 TGCGAGTCTGGAAAGTTACATTTTGGAATTACAAGTTAAGTTAACACTTATTCATGAACA 180 consensus_10051#1 ------------------------------------------------------------ consensus_10051#0 ATATGACCAAGAGTTAAAGCGTTTGGGTGTTAATCAATCACGATTGACCGCTCCAACATT 240 consensus_10051#1 ------------------------------------------------------------ consensus_10051#0 TCGTAATATTCCAAATCGATTTCAACAAATACATGATATCAATGAAAAACCTTCAAAAAT 300 consensus_10051#1 ------------------------------------------------------------ consensus_10051#0 CTCATCATTTCTAAATCCGTCAATAAAGCTCATTCATAATGCTGCTTGCGCTAGTGCTAG 360 consensus_10051#1 ------------------------------------------------------------ consensus_10051#0 TACCAGCTATCAAATGCCATCAATCTTATCAGTAGACCAAGGTGTTGATGCATTAAGCTT 420 consensus_10051#1 ------------------------------------------------------------ consensus_10051#0 GGAGGATTCTTCAAATCCTGACGTAGATAGCAACAATAATCACTCAACATCAACATCAAT 480 consensus_10051#1 ------------------------------------------------------------ consensus_10051#0 TGTTGAGCATATTCCCAGTGAATCGAAACGATATCGTTCAGTTAAATTTACCGAATCTAA 540 consensus_10051#1 --------------------AAAAATAATGATAGAGA-CAATAAAACATCTGCAATACGA 39 ** ** **** * ** * *** * *** * consensus_10051#0 TTCAAATATTAAAAAAATCGACCAAGATTCATGTGTTTTGCCTGTGGATATATCAAACAG 600 consensus_10051#1 C---AACAACAAGAAGAACATGAAGAAACCAT---------TTGAACAAAAATGAATCGG 87 ** * ** ** * * * * *** ** * * ** ** * * consensus_10051#0 AAAGTCTAATACAAAACGTCTACCTTTACCCATAAGAGCACGTTCTAATTCTCCAACTAC 660 consensus_10051#1 ATCATC--ATGAATAAAGACAAAGTTCA--------AGC-----CTATTACTACTACCCT 132 * ** ** * ** * * * ** * *** *** * ** * ** consensus_10051#0 TACTACTACTACTACTAATAGTAGTAGTTATCCTAGTTCAATAAGTGAATCATCTCAGCA 720 consensus_10051#1 AACTACTACTACTAATAGTAGTAGTAGTTATCCTAGTTCAATAAGTGAATCATCTCAGCT 192 ************* ** ***************************************** consensus_10051#0 AAAATATATTAAATCAAAGAGTCCATTAAAATCAAATAGTTCCGGTCAAACATTTCATCA 780 consensus_10051#1 AAAATATATTAAATCAAAGAGTCCATTAAAATCAAATAGTTCCGGTCAAACATTTCATCA 252 ************************************************************ consensus_10051#0 GAAATCAAAAATGCTTGTTAGCGTTCAAGAAATACCGTCTGAACGTTTCATCCTGCCGGA 840 consensus_10051#1 GAAATCAAAA-TGCTTGTTAGCGTTCAAGAAATACCGTCTGAACGTTTCATCCTGCCGGA 311 ********** ************************************************* consensus_10051#0 TAATTCATATTCTACTGTATCTTTTCCTAATAATAGTTCACCAAAAACTCTCGACAGTAT 900 consensus_10051#1 TAATTCATATTCTACTGTATCTTTTCCTAATAATAGTTCACCAAAAACTCTCGACAGTAT 371 ************************************************************ consensus_10051#0 GACAGTTGTTGTAAAACCAAGAAGTCATAGCTTATTCTCTTGTGACGTCCCGCATATAT 959 consensus_10051#1 GACAGTTGTTGTAAAACCAAGAAGTCA-------------------------------- 398 *************************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||