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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10053#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1502 fasta sequence
[GAGTTTATACTCAACATCCATAAACGCCAAATGTAGAACATGTAGATATCGTGGTGATCGCTAAGACTTGAGACAAGTAAAACGTTGTCCGTTAGTTTACTGAGACTTTTACCTCATGTCAAGTGAGTAGTCGAAATAATTCCGATAGTTTAACTATCGGTTCAAATTTCCATGTCCAGTCAACGCGCAAAATACTCAGTCGTCCATCAAATCACATTCACTTATCATTTCATCAGATATAACTTATTCATAAACATGCATATTGAAACCAAATTAATTTGTGATCTGCTTTAATGATTTTTATAGCTATACAAGATTTGCGGGGAAATTACGAGAAACAGTTTCGTAAGTCATTCTAATAACCGAATAGTTTAAAACAATTG-AAGTACACTGACATACTTTGCAGACTGATTCTTCTATTAATATGAAGTGAAGTGAAGAGTGTGAAACTCCCATTGGTACAACTTCGAAAGTTCTTAAAAAAATGAAAGATGCTGTGCATGAAGCTTTGATATATTTAGTATTAGAGGTCTAACATTGATCGATTCATGATGTCAATCCAAAAACATAACAATCTATACACC-CCCACACTGATATTTAGTATTCGTTTACCAATGAAATTCAAGGACTCCATTCTATCCTACTTCACACTAGTAGGATGAATATATCTCGGTCATAATGGTGATGTTCACACTGAGGCCCGAAACCGTGAATTCTTGACTGCAACCAACACTTTGAAGGGAACTCTGTTGAAGTTTCTTTGAGAACATCAACACTGGGAAAATGTGAGTTCAGATGAGGGAACTCACACTGACAGAAATGAGAGATACACTTATCTCAACATATCAGATATATCATAATCTAATTTCCAGATAATACACTAAGAAATCTCGTGTAGCAACTGAGGCCATCGTATAAGGTCCTGAATACTGTTCATGAGAAATCTCAAACCCTCATTATTTGAAAATTCAAATGTTGTTATTCCATACTTTTATAGTTTGATGTTTGTTCAACGTCTCTAATTCTATACAGCGGATGTCCATTTCAAATTATCGAAATTGGTAAAATATTTTAAAGAAAGTGCTGCACGTTCTAAAGATGTGATGTCTCAGTACAGTATGGAAAAGTGTAATACGCTGATACCACACCGTACAGC-AGGTAGTTTTACTTGAATTATCTCTATTGATATTAATGAATATGATAGATATAACCTGACATTCCTTACTGAAATTCATATTCAACGCTACTTCCTTTTTACATTTGTAACTTAGTTAAAATAATTAGATATAGAAATGCGATAAAAGATTCATCACCTCTAATGGCATTGCAATTTGGAACTATTAATAACGGGTGAAATACTCATGAATGAAGTATTTCATGTTACAGAAGGAATCTAGTAAAGTGAATAGAAGCTGAAAGCATGGACTAAATATTCACAATGACTTTCACAAACGAGTGGGGACATGGTAAAGAGAACAATGTGACTCTCCGTTATTCTTCCG]
[-] EMBL CD113403 [GAGTTTATACTCAACATCCATAAACGCCAAATGTAGAACATGTAGATATCGTGGTGATCGCTAAGACTTGAGACAAGTAAAACGTTGTCCGTTAGTTTACTGAGACTTTTACATCATGTCTAGTGAGTAGTCGAAATAATTCCGATAGTTTAGCTATCGGTTCAAATTTCCATGTCCAGTCAACGCGCGAAATAGTCAGTCGTCCATCAAATCACATTCACTTATCATTTCATCAGATATAACTTATTCATAAACATGCATATTGAAACCAAATTCATTTGTGATGTGCTTTAATGATTTTTATAGCTATACAAGATTTGCGGGGAAATTACGAGAAACAGTTTCGTAAGTCATTTTAATAACCGAATAGTTTAAAACAATTG AAGTACACTGACATACTTTGCAGAATGATTCTTCTATTAATATGAAGTGAAGTGAAGAGTGTGAAACTCCCATTGGTACAACTTCGAAAGTTCTTAAAAAAA ]
[-] EMBL CD118983 [ CTTGAGACAAGTAAAACGTTGTCCGTTAGTTTACTGAGACTTTTACCTCATGTCAAGTGAGTAGTCGAAATAATTCCGATAGTTTAACTATCGGTTCAAATTTCCATGTCCAGTCAACGCGCAAAATACTCAGTCGTCCATCAAATCACATTCACTTATCATTTCATCAGATATAACTTATTCATAAACATGCATATTGAAACCAAATTAATTTGTGATCTGCTTTAATGATTTTTATAGCTATACAAGATTTGCGGGGAAATTACGAGAAACAGTTTCGTAAGTCATTCTAATAACCGAATAGTTTAAAACAATTG AAGTACACTGACATACTTTGCAGACTGATTCTTCTATTAATATGAAGTGAAGTGAAGAGTGTGAAACTCCCATTGGTACAACTTCGAAAGTTCTTAAAAAAATGAAAGATGCTGTGCATGAAGCTTTGATATATTTAGTATTAGAGGTCTAACATTGA ]
[+] EMBL CD149585 [ AGTAAAACGTTGTCCGTTAGTTTACTGAGACTTTTACCTCATGTCAAGTGAGTAGTCGAAATAATTCCGATAGTTTAACTATCGGTTCAAATTTCCATGTCCAGTCAACGCGCAAAATACTCAGTCGTCCATCAAATCACATTCACTTATCATTTCATCAGATATAACTTATTCATAAACATGCATATTGAAACCAAATTAATTTGTGATCTGCTTTAATGATTTTTATAGCTATACAAGATTTGCGGGGAAATTACGAGAAACAGTTTCGTAAGTCATTCTAATAACCGAATAGTTTAAAACAATTG AAGTACACTGACATACTTTGCAGACTGATTCTTCTATTAATATGAAGTGAAGTGAAGAGTGTGAAACTCCCATTGGTACAACTTCGAAAGTTCTTAAAAAAATGAAAGATGCTGTGCATGAAGCTNTGATATATTTAGTATTAGAGGTCTAACATTGATCGATTCATGATGTCAACCCAAAAACATAACAATCTATACACC CNCACACTGATATTTAGTAT ]
[+] EMBL CD149599 [ AGTAAAACGTTGTGCGTTAGTTTACTGAGACTTTTACCTCATGTCAAGTGAGTAGTCGAAATAATTCCGATAGTTTAACTATCGGTTCAAATTTCCATGTCCAGTCAACGCGCAAAATACTCAGTCGTCCATCAAATCACATTCACTTATCATTTCATCAGATATAACTTATTCATAAACATGCATATTGAAACCAAATTAATTTGTGATCTGCTTTAATGATTTTTATAGCTATACAAGATTTGCGGGGAAATTACGAGAAACAGTTTCGTAAGTCATTCTAATAACCGAATAGTTTAAAACAATTG AAGTACACTGACATACTTTGCAGACTGATTCTTCTTTTAA ]
[+] EMBL CD149192 [ AGTAAAACGTTGTCCGTTAGATTATTAAGAAATTTATCTCATGTCAAGTGAGTAGTCGAATTAATTCCGATAGTTTAAACATTGATTCATATTTCCATGTCCAGTCAACACGCAATATACTCAGTCGTCCATCAAATCACATTCACTTATCATTTCATCAGATATAACTTATTCATAAACATGCATATTGAAACCAAATTAATTTGTGATCTGCTTTAATGATTTTTATAGCTATACAAGATTTGCGGGGAAATTACGAGAAACAGTTTCGTAAGTCATTCTAATAACCGAATAGTTTAAAACAATTG AAGTACACTGACATACTTTGCAGACTGATTCTTCTATTAATATGAAGTGAAGTGAAGAGTGTGAAACTCCCATTGGTACAACTTCGAAAGTTCTTAAAAAAATGAAAGATGCTGTGCATGAAGCTNTGATATATTTAGTATTAGAGGTCTAACATAGATCG ]
[+] EMBL CD149484 [ AGTAAAACGTTGTCCGTTAGTTTACTGAGACTTTTACCTCATGTCAAGTGAGTAGTCGAAATAATTCCGATAGTTTAACTATCGGTTCAAATTTCCATGTCCAGTCAACGCGCAAAATACTCAGTCGTCCATCAAATCACATTCACTTATCATTTCATCAGATATAACTTATTCATAAACATGCATATTGAAACCAAATTAATTTGTGATCTGCTTTAATGATTTTTATAGCTATACAAGATTTGCGGGGAAATTACGAGAAACAGTTTCGTAAGTCATTCTAATAACCGAATAGTTTAAAACAATTG AAGTACACTGACATACTTTGCAGA ]
[-] EMBL CD125739 [ ATTCTAATANCCGAATAGTTTGAAAC ATTGAAAGTATACTGACATACTTTGCAGACTGATTCTTCTATTAATATGAAGTGAAGTGAAGAGTGTGAAACTCCCATTGGTACAACTTCGAAAGTTCTT CAAAATGAAGGATGCTGTGCATTATGCTTTGATATATTTAGTATTAGTGGTCTAACATTGATCGATTCATGATGTCAATCCAAAAACATAACAATCTATGCACCACCCA ]
[+] EMBL CD148192 [ TTTGATATATTCAGTATTAGAGGTCTAACATTGATCGATTCATGATGTCAATCCAAAAACATAACAATCTATACACC CCCACACTGATATTTAGTATTCGTTTACCAATGAAATTCAAGGACTCCATTCTATCCTACTTCACACTAGTAGGATGAATATATCTCGGTCATAATGGTGATGTTCACACTGAGGCCCGAAACCGTGAATTCTTGACTGCAACCAACACTTTGAAGGGAACTCTGTTGAAGTTTCTTTGAGAACATCAACACTGGGAAAATGTGAGTTCAGATGAGGGAACTCACACTGACAGAAATGAGAGATACACTTATCTCAACATATCAGATATATCATAATCTAATTTCCAGATAATACACTAAGAAATCTCGTGTAGCAACTGAGGCCATCGTATAAGGTCCTGAATACTGTTCATGAGAAATCTCAAACCCTCATTATTTGAAAATTCAA ]
[+] EMBL CD119025 [ TTTGATATATTCAGTATTAGAGGTCTAACATTGATCGATTCATGATGTCAATCCAAAAACATAACAATCTATACACC CCCACACTGATATTTAGTATTCGTTTACCAATGAAATTCAAGGACTCCATTCTATCCTACTTCACACTAGTAGGATGAATATATCTCGGTCATAATGGTGATGTTCACACTGAGGCCCGAAACCGTGAATTCTTGACTGCAACCAACACTTTGAAGGGAACTCTGTTGAAGTTTCTTTGAGAACATCAACACTGGGAAAATGTGAGTTCAGATGAGGGAACTCACACTGACAGAAATGAGAGATACACTTATCTCAACATATCAGATATATCATAATCTAATTTCCAGATTATACACTAAGAAATCTCGTGTAG ]
[+] EMBL CD116550 [ TTTGAAGGGAACTCTGTTGAAGTTTCTTTGAGAACATCAACACTGGGAAAATGTGAGTTCAGATGAGGGAACTCACACTGACAGAAATGAGAGATACACTTATCTCAACATATCAGATATATCATAATCTAATTTCCAGATAATACACTAAGAAATCTCGTGTAGCAACTGAGGCCATCGTATAAGGTCCTGAATACTGTTCATGAGAAATCTCAAACCCTCATTATTTGAAAATTCAAATGTTGTTATTCCATACTTTTATAGTTTGATGTTTGTTCAACGTCTCTAATTCTATACAGCGGATGTCCATTTCAAATTATCGAAATTGGTAAAATATTTTAAAGAAAGTGCTGCACGTTCTAAAGATGTGATGTCTCAGTACAGTATGGAAAAGTGTAATACGCTGATACCACACCGTACAGCAAGGTA ]
[-] EMBL CD147853 [ GCGGATGTCCATTTCAAATTATCGAAATTGGTAAAATATTTTAAAGAAAGTGCTGCACGTTCTAAAGATGTGATGTCTCAGTACAGTATGGAAAAGTGTAATACGCTGATACCACACCGTACAGC AGGTAGTTTTACTTGAATTATCTCTATTGATATTAATGAATATGATAGATATAACCTGACATTCCTTACTGAAATTCATATTCAACGCTACTTCCTTTTTACATTTGTAACTTAGTTAAAATAATTAGATATAGAAATGCGATAAAAGATTCATCACCTCTAATGGCATTGCAATTTGGAACTATTAATAACGGGTGAAATACTCATGAATGAAGTATTTCATGTTACAGAAGGAATCTAGTAAAGTGAATAGAAGCTGAAAGCATGGACTAAATATTCACAATGACTTTCACAAACGAGTGGGGACATGGTAAAGAGAACAATGTGACTCTCCGTTATTCTTCCG]
[+] EMBL CD154702 [ TAATACGCTGATACCATACCGTACAGC AGGTAGTTTAACTTGAATTATCTCTCTTGATATTAATGAATATGATAGATATAACCTGAAATTCCTTACTGAAATTCATATTCAACGCTACTTCCTTTCTACCTTTGTAACTTGGTTAAAATAATTAGATATAGAAATGCGATAAAAGATTCATCACCTCTGATGGCATTGCATTTTGGAACGATTAATAACGGGTGTAATACTCATGAAT ]
consensusID : consensus_10053#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 478 fasta sequence
[ATTCGTTTATTAATGAAATTCAAGGACTCCATTCTATCCTACTTCACACTAGTAGGATGAATATATCTCGGTCATAATGGTGATGTTCACACTGAGGCCCGAAACCGCGAATTCTTGACTTAAACCAACACTGTGAAGAGAACTCTGTTGACGTTTCTTTGAGAATATCAACACTGGGAAAACATGAGTTCAGATGACGGATCTCACGCTGACAGAAATGAAAGTTACACATATCTCAACATATCAGATACATCATAATCTAATTTCCAGATAATACACTAAGAAATCTCGTGTAGCAACAGAGGCCATCGTATAAGGTCCTGAATACTGTTCATGAGAAATCTCAAACCCCCATTATAATAAATTCAAATGTTGTTATTCCATACCTTTATAGTTTGATGTTTGTTCAGCATCTCTTATTCTATACAGCGGATGTTAATTTCAATTCATCGATGTTGGAAGAACATTTTAAAGAAAA]
[+] EMBL CD097850 [ATTCGTTTATTAATGAAATTCAAGGACTCCATTCTATCCTACTTCACACTAGTAGGATGAATATATCTCGGTCATAATGGTGATGTTCACACTGAGGCCCGAAACCGCGAATTCTTGACTTAAACCAACACTGTGAAGAGAACTCTGTTGACGTTTCTTTGAGAATATCAACACTGGGAAAACATGAGTTCAGATGACGGATCTCACGCTGACAGAAATGAAAGTTACACATATCTCAACATATCAGATACATCATAATCTAATTTCCAGATAATACACTAAGAAATCTCGTGTAGCAACAGAGGCCATCGTATAAGGTCCTGAATACTGTTCATGAGAAATCTCAAACCCCCATTATAATAAATTCAAATGTTGTTATTCCATACCTTTATAGTTTGATGTTTGTTCAGCATCTCTTATTCTATACAGCGGATGTTAATTTCAATTCATCGATGTTGGAAGAACATTTTAAAGAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10053#0 GAGTTTATACTCAACATCCATAAACGCCAAATGTAGAACATGTAGATATCGTGGTGATCG 60
consensus_10053#1 ------------------------------------------------------------
consensus_10053#0 CTAAGACTTGAGACAAGTAAAACGTTGTCCGTTAGTTTACTGAGACTTTTACCTCATGTC 120
consensus_10053#1 ------------------------------------------------------------
consensus_10053#0 AAGTGAGTAGTCGAAATAATTCCGATAGTTTAACTATCGGTTCAAATTTCCATGTCCAGT 180
consensus_10053#1 ------------------------------------------------------------
consensus_10053#0 CAACGCGCAAAATACTCAGTCGTCCATCAAATCACATTCACTTATCATTTCATCAGATAT 240
consensus_10053#1 ------------------------------------------------------------
consensus_10053#0 AACTTATTCATAAACATGCATATTGAAACCAAATTAATTTGTGATCTGCTTTAATGATTT 300
consensus_10053#1 ------------------------------------------------------------
consensus_10053#0 TTATAGCTATACAAGATTTGCGGGGAAATTACGAGAAACAGTTTCGTAAGTCATTCTAAT 360
consensus_10053#1 ------------------------------------------------------------
consensus_10053#0 AACCGAATAGTTTAAAACAATTGAAGTACACTGACATACTTTGCAGACTGATTCTTCTAT 420
consensus_10053#1 ------------------------------------------------------------
consensus_10053#0 TAATATGAAGTGAAGTGAAGAGTGTGAAACTCCCATTGGTACAACTTCGAAAGTTCTTAA 480
consensus_10053#1 ------------------------------------------------------------
consensus_10053#0 AAAAATGAAAGATGCTGTGCATGAAGCTTTGATATATTTAGTATTAGAGGTCTAACATTG 540
consensus_10053#1 ------------------------------------------------------------
consensus_10053#0 ATCGATTCATGATGTCAATCCAAAAACATAACAATCTATACACCCCCACACTGATATTTA 600
consensus_10053#1 ------------------------------------------------------------
consensus_10053#0 GTATTCGTTTACCAATGAAATTCAAGGACTCCATTCTATCCTACTTCACACTAGTAGGAT 660
consensus_10053#1 --ATTCGTTTATTAATGAAATTCAAGGACTCCATTCTATCCTACTTCACACTAGTAGGAT 58
********* ***********************************************
consensus_10053#0 GAATATATCTCGGTCATAATGGTGATGTTCACACTGAGGCCCGAAACCGTGAATTCTTGA 720
consensus_10053#1 GAATATATCTCGGTCATAATGGTGATGTTCACACTGAGGCCCGAAACCGCGAATTCTTGA 118
************************************************* **********
consensus_10053#0 CTGCAACCAACACTTTGAAGGGAACTCTGTTGAAGTTTCTTTGAGAACATCAACACTGGG 780
consensus_10053#1 CTTAAACCAACACTGTGAAGAGAACTCTGTTGACGTTTCTTTGAGAATATCAACACTGGG 178
** ********** ***** ************ ************* ************
consensus_10053#0 AAAATGTGAGTTCAGATGAGGGAACTCACACTGACAGAAATGAGAGATACACTTATCTCA 840
consensus_10053#1 AAAACATGAGTTCAGATGACGGATCTCACGCTGACAGAAATGAAAGTTACACATATCTCA 238
**** ************* *** ***** ************* ** ***** *******
consensus_10053#0 ACATATCAGATATATCATAATCTAATTTCCAGATAATACACTAAGAAATCTCGTGTAGCA 900
consensus_10053#1 ACATATCAGATACATCATAATCTAATTTCCAGATAATACACTAAGAAATCTCGTGTAGCA 298
************ ***********************************************
consensus_10053#0 ACTGAGGCCATCGTATAAGGTCCTGAATACTGTTCATGAGAAATCTCAAACCCTCATTAT 960
consensus_10053#1 ACAGAGGCCATCGTATAAGGTCCTGAATACTGTTCATGAGAAATCTCAAACCCCCATTAT 358
** ************************************************** ******
consensus_10053#0 TTGAAAATTCAAATGTTGTTATTCCATACTTTTATAGTTTGATGTTTGTTCAACGTCTCT 1020
consensus_10053#1 A-ATAAATTCAAATGTTGTTATTCCATACCTTTATAGTTTGATGTTTGTTCAGCATCTCT 417
************************* ********************** * *****
consensus_10053#0 AATTCTATACAGCGGATGTCCATTTCAAATTATCGAAATTGGTAAAATATTTTAAAGAAA 1080
consensus_10053#1 TATTCTATACAGCGGATGTTAATTTCAATTCATCGATGTTGGAAGAACATTTTAAAGAAA 477
****************** ******* * ***** **** * ** ************
consensus_10053#0 GTGCTGCACGTTCTAAAGATGTGATGTCTCAGTACAGTATGGAAAAGTGTAATACGCTGA 1140
consensus_10053#1 A----------------------------------------------------------- 478
consensus_10053#0 TACCACACCGTACAGCAGGTAGTTTTACTTGAATTATCTCTATTGATATTAATGAATATG 1200
consensus_10053#1 ------------------------------------------------------------
consensus_10053#0 ATAGATATAACCTGACATTCCTTACTGAAATTCATATTCAACGCTACTTCCTTTTTACAT 1260
consensus_10053#1 ------------------------------------------------------------
consensus_10053#0 TTGTAACTTAGTTAAAATAATTAGATATAGAAATGCGATAAAAGATTCATCACCTCTAAT 1320
consensus_10053#1 ------------------------------------------------------------
consensus_10053#0 GGCATTGCAATTTGGAACTATTAATAACGGGTGAAATACTCATGAATGAAGTATTTCATG 1380
consensus_10053#1 ------------------------------------------------------------
consensus_10053#0 TTACAGAAGGAATCTAGTAAAGTGAATAGAAGCTGAAAGCATGGACTAAATATTCACAAT 1440
consensus_10053#1 ------------------------------------------------------------
consensus_10053#0 GACTTTCACAAACGAGTGGGGACATGGTAAAGAGAACAATGTGACTCTCCGTTATTCTTC 1500
consensus_10053#1 ------------------------------------------------------------
consensus_10053#0 CG 1502
consensus_10053#1 --
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||