These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10055#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 542 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTCGAAAAACAATCGAATTTCAAATGATCACATAGTTTTTGTTTATAGTGACATACTAAAAACGATCATTATTTAATCATGTCACTGCGGTGGTACAGTGTATGTCGGGGGTACTGCAACTCCTGGTTGAGGCCACGGGATTTGCGGTCTGGGTGGAATGATCATGCCCTGTGGAGGAACTAATGGGAGGGGTGGTCTGAAACCAGTT-GGAACACCGATCATAGGAGGATAGCGAGGGGGGTAACCAAGCCCAGG-GGGTGGTATTCCTGCTGCAGCCCCAA-AT-AGTGGTGGTGGCATTTTACCTTGCTTGTATGCTTCAGATGTGTGATCTACTAATCTTTGGACTTGTTCTTC-CAGCCATTTTTGGT-AATATTCC-TTTACATTATCTTTGTGGTTTCTACC--ACCGCAATGTGTC-TTTCTCACAGATGGAGAATCATGAGTTAAGTAGGTATCACAGTAGTCACAATAGTACTTCGGCATACTTGACCTTACAGGTATCGATAAGTCAAAACCTCCGTG] [+] EMBL AI395181 [TTTTTTTTTTTTTTTTTTTTTTTTTCGAAAAACAATCGAATTTCAAATGATCACATAGTTTTTGTTTATAGTGACATACTAAAAACGATCATTATTTAATCATGTCACTGCGGTGGTACAGTGTATGTCGGGGGTACTGCAACTCCTGGTTGAGGCCACGGGATTTGCGGTCTGGGTGGAATGATCATGCCCTGTGGAGGAACTAATGGGAGGGGTGGTCTGAAACCAGTT GGAACACCGATCATAGGAGGATAGCGAGGGGGGTAACCAAGCCCAGG GGGTGGTATTCCTGCTGCAGCCCCAA AT AGTGGTGGTGG ATTTTACCTTGCTTGTATGCTTCAGATGTGTGATCTACTAATCTTTGGGCTTGTTCTTCTCAGCCATTTTTTGTGAATATTCCTTTTACACTACCCTTGTGGGTTCTACCAAACGGCACTGTGTCTTTTCTCACAGATGGAGAATCATGAGTTTAGTAGGTATCACAGTAGTCAC ATAGTACTTCGG ATACTGGACCTTACAGGTATCGATAAGTCAAAACCTCCGTG] [+] EMBL CD114452 [ TCGGGGGTACTGCAACTCCTGGTTGAGGCCACGGGATTTGCGGTCTGGGTGGAATGATCATGCCCTGTGGAGGAACTAATGGGAGGGGTGGTCTGAAACCAGTT GGAACACCGATCATAGGAGGATAGCGAGGGGGGTAACCAAGCCCAGG GGGTGGTATTCCTGCTGCAGCCCCAA AT AGTGGTGGTGGCATTTTACCTTGCTTGTATGCTTCAGATGTGTGATCTACTAATCTTTGGACTTGTTCTTC CAGCCATTTTTGGT AATATTCC TTTACATTATCTTTGTG ] [+] EMBL CD194787 [ GTTGAGGCCACGGGATTTGCGGTCTGGGTGGAATGATCATGCCCTGTGGAGGAACTAATGGGAGGGGTGGTCTGAAACCAGTT GGAACACCGATCATAGGAGGATAGCGAGGGGGGTAACCAAGCCCAGG GGGTG ] [+] EMBL CD133529 [ CGGGATTTGCGGTCTGGGTGGAATGATCATGCCCTGTGGAGGAACTAATGGGAGGGGTGGTCTGAAACCAGTT GGAACACCGATCATAGGAGGATAGCGAGGGGGGTAACCAAGCCCAGG GGGTGGTATTCCTGCTGCAGCCCCAA AT AGTGGTGGTGGCATTTTACCTTGCTTGTATGCCTCAGATGTGTGATCTACTAATCTTTGGACTTGTTCTTC CAGCCATTTTTGGT AATATTCC TTTACATTATCTTTGTGGTTTCTACC ACCACAATGTGTC TTTCTCACAGATGGAGAATCATGAGTTAAGTAGGTATCACAGTAGTCACAATAGTACTTCGGCGTACTTTACCTTACAGGTATCG ] [-] EMBL CD133274 [ GGGATTTGCGGTCTGGGTGGAATGATCATGCCCTGTGGAGGAACTAATGGGAGGGGTGGTCTGAAACCAGTT GGAGCACCGATCATAGGAGGATAGCGAGGGGGGTAACCAAGCCCAGG GGGTGGTATTCCTGCTGCAGCCCCAA AT AGTGGCGGTGGCATTTTACCTTGCTTGTATGCCTCAGATGTGTGATTTAATAATCTTTGGACTTGTTCTTC CAGCCATTTTTGGT AATATTCC TTTACATTATCTTTGTG ] [+] EMBL CD194771 [ TCTGGGTGGAATGATCATGCCCTGAGGAGGAACTAATGGGAGGGGTGGCCTGAAACCAATTAGGAACACCGATCATAAGATGATAGCGAGGGGGGTAACCAATCCCAGGAGGGTGGTATTCCTGCTGCAGCCCCGA AT ACTGGTGGTGGCATTTTACCTTGCTTGTATGCTACAAATGTGTGATCTACTAATCTTTGGACTTGTTCTTC CAGCCATTTTTGGT AATATTCC TTTACATTATCTTTGTGGTTTCTACC ACCGCAATGTGTC TTTCTCACAGATGGAGAATCATGAGTTAA ] [-] EMBL CD062919 [ GGAATGATCATGCCCTGTGGAGGAACTAATGGGAGGGGTGGTCTGAAACCAGTT GGAACTCCGATCATAGGAGGATAGCGAGGGGGGTAACCAAGCCCAGG GGGTGGTATTCCTGCTGCAGCCCCAAGAT AGTGGTGGTGGCATTTTACCatag ] [-] EMBL CD062915 [ GGAATGATCATGCCCTGTGGAGGAACTAATGGGAGGGGTGGTCTGAAACCAGTT GGAACCCCGATCATAGGAGGATAGCGAGGGGGGTAACCAAGCGCAGG GGGTGGTATTCCTGGTGCAGCCCCAA ATGAGTGG ] [+] EMBL CD095094 [ GAATGATCATGCCCTGTGGAGGAACTAATGGGAGGGGTGGTCTGAAACCAGTT GGAACACCGATCATAGGAGGATAGCGAGGGGGGTAACCAAGCCCAGG GGGTGGTATTCCTGCTGCAGCCCCAA AT AGTGGTGGTGGCATTTTACCTTGCTTGTATGCTTCAGATGTGTGATCTACTAATCTTTGGACTTGTTCTTC CAGCCATTTTTGGT AATATTCC TTTACATTATCTTTGTGGTTTCTACC ACCGCAATGTGTC TTTCTCACAGATGGAGAATCATGAGTTAA ] [+] EMBL CD194614 [ ATCATGCCCTGTGGAGGAACTAATGGGAGGGGTGGTCTGAAACCAGTT GGAACACCGATCATAGGAGGATAGCGAGGGGGGTAACCAAGCCCAGG GGGTGGTATTCCTGCTGCAGCCCCAA AT AGTGGTGGTGGCATTTTACCTTGCTTGTATGCTTCAGATGTGTGATCTACTAATCTTTGGACTTGTTCTTC CAGCCATTTTTGGT AATATTCC TTTACATTATCTTTGTGGTTTCTACC ACCGCAATGTGTC TTTCTCACAGATGGAGAATCATGAGTTAA ] [+] EMBL CD097588 [ TTCCTGCTGCAGCCCCAA AT AGTGGTGGTGGCATTTTACCTTGCTTGTATGCTTCAGATGTGTGATCTACTAATCTTTGGACTTGTTCTTC CAGCCATTTTTGGT AATATTCC TTTACATTATCTTTGTGGTTTCTACC ACCGCAATGTGTC TTTCTCACAGATGGAGAATCATGAGTTAAGTAGGTATCACAGTAGTCACAATAGTACTTCGGCATACTTGACCTTACAGGTATC ] consensusID : consensus_10055#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 535 fasta sequence [TTTCCCAAGAAAAAAACCTTCGAAAAACAACGATTTCAAAGAACCCCTATTTTTTTTTTATGGCCTACTAAAACGATCATTTTTGATCATGTCACGCGGTGTACATATATTTCGGGGTACTCAACTCCTGGTGAGGCCACCGGATTTCCGTCTGGTGGAATGATCATGCCCTGTGGAGGAACTAATGGGAGGGGTGTCTGAAACCAGTTGGAACACCGATCATAGGAGGATAGCGAGGGGGGTAACCAAGCCCAGGGGGTGGTATTCCTGCTGCAGCCCCAAATAGTGGTGGTGGCATTTTACCTTGCTTGTATGCTTCAGATGTGTGATCTACTAATCTTTGGACTTGTTCTTCCAGCCATTTTTGGTAATATTCCTTTACATTATCTTTGTGGTTTCTACCACCGCAATGTGTCTTTCTCACAGATGGAGAATCATGAGTTAAGTAGGTATCACAGTAGTCACAATAGTACTTCGGCATACTTGACTTACAGGTATCGAATAAGTTCAAAACATGCGCAACAGACTTCAAAAT] [-] EMBL AW146509 [TTTCCCAAGAAAAAAACCTTCGAAAAACAACGATTTCAAAGAACCCCTATTTTTTTTTTATGGCCTACTAAAACGATCATTTTTGATCATGTCACGCGGTGTACATATATTTCGGGGTACTCAACTCCTGGTGAGGCCACCGGATTTCCGTCTGGTGGAATGATCATGCCCTGTGGAGGAACTAATGGGAGGGGTGTCTGAAACCAGTTGGAACACCGATCATAGGAGGATAGCGAGGGGGGTAACCAAGCCCAGGGGGTGGTATTCCTGCTGCAGCCCCAAATAGTGGTGGTGGCATTTTACCTTGCTTGTATGCTTCAGATGTGTGATCTACTAATCTTTGGACTTGTTCTTCCAGCCATTTTTGGTAATATTCCTTTACATTATCTTTGTGGTTTCTACCACCGCAATGTGTCTTTCTCACAGATGGAGAATCATGAGTTAAGTAGGTATCACAGTAGTCACAATAGTACTTCGGCATACTTGACTTACAGGTATCGAATAAGTTCAAAACATGCGCAACAGACTTCAAAAT] consensusID : consensus_10055#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence [TTTTCAGAATAATTACAGAAAGAATTCTTTGAAGAATGCAAATAAGAGAAAACGCAACACTTCTATAATTGTGTGGCGACATTTACACGTTTTACCAAGAAAAATAACGCTTTCGAAAAACAATTGAATTTCAAATGATTACATAGTTTTTGTTTATAGTGACATACTAAAAACGATCATTATTTAATCATGTCACTGTGGTGGTACAGTGTATGTCGGGGGTACTGCAACTCCTGGTTGAGGCCACGGGATTTGCGGTCTGGGTGGAATGATCATGCCCTGTGGAGGAACTAATGGGAGGGGTGGTCTGAAACCAGTTGGATCACCGATCATAGGAGGATAGCGAGGGGGGTAACCAAGCCCAGGGGGTGGTATTCCTGCTGCAGCCCCAAATAGTGGTGGTGGCATTTTACCTTGCTTGTATGCCTCAGATGTGTGATCTACTAATCTTTGGACTTGTTCTTCCAGCCATTTTTGGAAATATTCCTTTACATT] [+] EMBL CD132893 [TTTTCAGAATAATTACAGAAAGAATTCTTTGAAGAATGCAAATAAGAGAAAACGCAACACTTCTATAATTGTGTGGCGACATTTACACGTTTTACCAAGAAAAATAACGCTTTCGAAAAACAATTGAATTTCAAATGATTACATAGTTTTTGTTTATAGTGACATACTAAAAACGATCATTATTTAATCATGTCACTGTGGTGGTACAGTGTATGTCGGGGGTACTGCAACTCCTGGTTGAGGCCACGGGATTTGCGGTCTGGGTGGAATGATCATGCCCTGTGGAGGAACTAATGGGAGGGGTGGTCTGAAACCAGTTGGATCACCGATCATAGGAGGATAGCGAGGGGGGTAACCAAGCCCAGGGGGTGGTATTCCTGCTGCAGCCCCAAATAGTGGTGGTGGCATTTTACCTTGCTTGTATGCCTCAGATGTGTGATCTACTAATCTTTGGACTTGTTCTTCCAGCCATTTTTGGAAATATTCCTTTACATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10055#0 ------------------------------------------------------------ consensus_10055#1 ------------------------------------------------------------ consensus_10055#2 TTTTCAGAATAATTACAGAAAGAATTCTTTGAAGAATGCAAATAAGAGAAAACGCAACAC 60 consensus_10055#0 -------------------------TTTTTTTTTTTTTTTTTTTTT---TTTTCGAAAAA 32 consensus_10055#1 ------------------------------TTTCCCAAGAAAAAAA---CCTTCGAAAAA 27 consensus_10055#2 TTCTATAATTGTGTGGCGACATTTACACGTTTTACCAAGAAAAATAACGCTTTCGAAAAA 120 *** ********* consensus_10055#0 CAATCGAATTTCAAATGATCACATAGTTTTTGTTTATAGTGACATACTAAAAACGATCAT 92 consensus_10055#1 CAAC--GATTTCAAA-GAACCCCTATTTTTTTTTTATGG---CCTACTAAAA-CGATCAT 80 consensus_10055#2 CAATTGAATTTCAAATGATTACATAGTTTTTGTTTATAGTGACATACTAAAAACGATCAT 180 *** ******** ** * ** ***** ***** * * ******** ******* consensus_10055#0 TATTTAATCATGTCACTGCGGTGGTACAGTGTATGTCGGGGGTACTGCAACTCCTGGTTG 152 consensus_10055#1 T-TTTGATCATGTCAC-GCGGTG-TACA-TATATTTCGGGG-TACT-CAACTCCTGGT-G 133 consensus_10055#2 TATTTAATCATGTCACTGTGGTGGTACAGTGTATGTCGGGGGTACTGCAACTCCTGGTTG 240 * *** ********** * **** **** * *** ****** **** *********** * consensus_10055#0 AGGCCACGGGATTTGCGGTCTGGGTGGAATGATCATGCCCTGTGGAGGAACTAATGGGAG 212 consensus_10055#1 AGGCCACCGGATTTCCG-TCTGG-TGGAATGATCATGCCCTGTGGAGGAACTAATGGGAG 191 consensus_10055#2 AGGCCACGGGATTTGCGGTCTGGGTGGAATGATCATGCCCTGTGGAGGAACTAATGGGAG 300 ******* ****** ** ***** ************************************ consensus_10055#0 GGGTGGTCTGAAACCAGTTGGAACACCGATCATAGGAGGATAGCGAGGGGGGTAACCAAG 272 consensus_10055#1 GGGTG-TCTGAAACCAGTTGGAACACCGATCATAGGAGGATAGCGAGGGGGGTAACCAAG 250 consensus_10055#2 GGGTGGTCTGAAACCAGTTGGATCACCGATCATAGGAGGATAGCGAGGGGGGTAACCAAG 360 ***** **************** ************************************* consensus_10055#0 CCCAGGGGGTGGTATTCCTGCTGCAGCCCCAAATAGTGGTGGTGGCATTTTACCTTGCTT 332 consensus_10055#1 CCCAGGGGGTGGTATTCCTGCTGCAGCCCCAAATAGTGGTGGTGGCATTTTACCTTGCTT 310 consensus_10055#2 CCCAGGGGGTGGTATTCCTGCTGCAGCCCCAAATAGTGGTGGTGGCATTTTACCTTGCTT 420 ************************************************************ consensus_10055#0 GTATGCTTCAGATGTGTGATCTACTAATCTTTGGACTTGTTCTTCCAGCCATTTTTGGTA 392 consensus_10055#1 GTATGCTTCAGATGTGTGATCTACTAATCTTTGGACTTGTTCTTCCAGCCATTTTTGGTA 370 consensus_10055#2 GTATGCCTCAGATGTGTGATCTACTAATCTTTGGACTTGTTCTTCCAGCCATTTTTGGAA 480 ****** *************************************************** * consensus_10055#0 ATATTCCTTTACATTATCTTTGTGGTTTCTACCACCGCAATGTGTCTTTCTCACAGATGG 452 consensus_10055#1 ATATTCCTTTACATTATCTTTGTGGTTTCTACCACCGCAATGTGTCTTTCTCACAGATGG 430 consensus_10055#2 ATATTCCTTTACATT--------------------------------------------- 495 *************** consensus_10055#0 AGAATCATGAGTTAAGTAGGTATCACAGTAGTCACAATAGTACTTCGGCATACTTGACCT 512 consensus_10055#1 AGAATCATGAGTTAAGTAGGTATCACAGTAGTCACAATAGTACTTCGGCATACTTGAC-T 489 consensus_10055#2 ------------------------------------------------------------ consensus_10055#0 TACAGGTATCGA-TAAGT-CAAAACCTCCGTG-------------- 542 consensus_10055#1 TACAGGTATCGAATAAGTTCAAAACATGCGCAACAGACTTCAAAAT 535 consensus_10055#2 ---------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||