These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10057#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 741 fasta sequence [CGCGGCCAAAAATTCGGTTCGAGGCTTGCTGAAGGACACTTGCCTGTCGATCGCGCAGTTGTGCTCTTTGAAGCTTTTAAAAATAGTTATGATATGCTCGAAGCACACTTCTAATTTGTTCCAGAATGTGTTTCGCTGGGCGTCCAGTCAGGTGGTTTTCAATAGTACAAATATACCAGACTTGAAAGCGCCAAGGTCTTTAAGTGCTGTTGCCGAGAAAACCGCACAACCAATTATTTTGGGCCATCATGTAGTTACAGAGGAATGTTTGACTTCATTAGTGGAAGATAAACAATATTACGAAACCCCCATCCTTCATTTGCTCTCAAGAAGAAACAACGTGGTTGCAACATTAACTGACTGTAATGGACGAGTTCTGAATGGCACTAGTTGTGGTGCCGAAGGTTTCCGGAACGCTCGTAAAATGTCTACTGTTGCTTTTCAAACTGTGGGTATCTCCATAGGACTGAAGGCGAAAAAGCTTGGGATTGGGGCTGTGCGTGTTGTATTTAATGGGTTAGGGTCATGTAGGCTGCCTGTGCTTTCAGGTTTGAATATCTCGGGACTAAAGATGATCTCTTTGACGGATGAT--ACAAAAGTTCATT-ACGGTCATGGGAGAAGACCT-AAAAAAC-AACGTAGGATTTAAAAGGAACATTTATATCAATCTTGACCTAATCATGGTAGTGGGAGTGTACATAAAATAAACTCCAG-AATTTGGCCTATTTAAAAAAAAAAAAAATA] [+] EMBL CD077784 [CGCGGCCAAAAATTCGGTTCGAGGCTTGCTGAAGGACACTTGCCTGTCGATCGCGCAGTTGTGCTCTTTGAAGCTTTTAAAAATAGTTATGATATGCTCGAAGCACACTTCTAATTTGTTCCAGAATGTGTTTCGCTGGGCGTCCAGTCAGGTGGTTTTCAATAGTACAAATATACCAGACTTGAAAGCGCCAAGGTCTTTAAGTGCTGTTGCCGAGAAAACCGCACAACCAATTATTTTGGGCCATCATGTAGTTACAGAGGAATGTTTGACTTCATTAGTGGAAGATAAACAATATTACGAAACCCCCATTCTTCATTTGCTC ] [+] EMBL CD078023 [ CTTGCTGAAGGACACTTGCCTGTCGATCGCGCAGTTGTGCTCTTTGAAGCTTTTAAAAATAGTTATGATATGCTCGAAGCACACTTCTAATTTGTTCCAGAATGTGTTTCGCTGGGCGTCCAGTCAGGTGGTTTTCAATAGTACAAATATACCAGACTTGAAAGCGCCAAGGTCTTTAAGTGCTGTTGCCGAGAAAACCGCACAACCAATTATTTTGGGCCATCATGTAGTTACAGAGGAATGTTTGACTTCATTAGTGGAAGATAAACAATATTACGAAACCCCCATCCTTCATTTGCTCTCAAGAAGAAAACACGT GTTGCAACATTAACTGACTGNTATGGACGAGTTCT ] [+] EMBL CD079378 [ TGAAGGACACTTGCCTGTCGATCGCGCAGTTGTGCTCTTTGAAGCTTTTAAAAATAGTTATGATATGCTCGAAGCACACTTCTAATTTGTTCCAGAATGTGTTTCGCTGGGCGTCCAGTCAGGTGGTTTTCAATAGTACAAATATACCAGACTTGAAAGCGCCAAGGTCTTTAAGTGCTGTTGCCGAGAAAACCGCACAACCAATTATTTTGGGCCATCATGTAGTTACAGAGGAATGTTTGACTTCATTAGTGGAAGATAAACAATATTACGAAACCCCCATCCTTCATTTGCTCTCAAGAAGAAACAACGTGGTTGCAACATTAACTGACTGTAATGGACGAGTTCTGAATGGCACTAGTTGTGGTGCCGAAGGTTTCCGGAACGCTCGTAAAATGTCTACTGTTGCTTTTCAAACTGTGGGTATCTCCATAGGACTGAAGGCGAAAAAGCTTGGGATTGGGGCTGTGCGTGTTGTATTTAATGGGTTAGGGTCATGTAGGCTGCCTGTGCTTTCAGGTTTGAATATCTCGGGACTAAAGATGATCTCTTTGACGGATGAT ACAAAAGTTCATT ACGGTCATGGGAGAAGACCT AAAAAAC AACGTAGGATTTANAAGGAACATTTATATCAATCTTGACCTAATCATGGTAGTGGGAGTGTACATAANATANACTCCAG AATT ] [-] EMBL CD073655 [ TTTTAAAAATAGTTATGATATGCTCGAAGCACACTTCTAATTTGTTCCAGAATGTGTTTCGCTGGGCGTCCAGTCAGGTGGTTTTCAATAGTACAAATATACCAGACTTGAAAGCGCCAAGGTCTTTAAGTGCTGTTGCCGAGAAAACCGCACAACCAATTATTTTGGGCCATCATGTAGTTACAGAGGAATGTTTGACTTCATTAGTGGAAGATAAACAATATTACGAAACCCCCATCCTTCATTTGCTCTCAAGAAGAAACAACGTGGTTGCAACATTAACTGACTGTAATGGACGAGTTCTGAATGGCACTAGTTGTGGTGCCGAAGGTTTCCGGAACGCTCGTAAAATGTCTACTGTTGCTTTTCAAACTGTGGGTATCTCCATAGGACTGAAGGCGAAAAAGCTTGGGATTGGGGCTGTGCGTGTTGTATTTAATGGGTTAGGGTCATGTAGGCTGCCTGTGCTTTCAGGTTTGAATATCTCGGGACTAAAGATGATCTCTTTGACGGATGAT ACAAAAGTTCATT ACGGTCATGGGAGAAGACCT AAAAAAC AACGTAGGATTTAAAAGGAACATTTATATCAATCTTGACCTAATCATGGTAGTGGGAGTGTACATAAAATAAACTCCAG AATTT ] [-] EMBL SMAA28916 [ AGGTTTGAATATCTC GGACTAAAGATGATCTCTTTGACGSATGATACACAAAAGTCCATTCACGGTCATGGGAGAAGACCTAAAAAAACAAACGTAGGATTTAAAAGGAACATTTATATCAATCTTGACCTAATCATGGTAGTGGGAGTGTACATAAAAT AACCCCAGCAAT ] [+] EMBL SMAA28940 [ AATATCTCGGGACTAAAGATGATCTCTTTGACGGATGAT ACAAAAGTTCATT ACGGTCATGGGAGAAGACCT AAAAAAC AACGTAGGATTTAAAAGGAACATTTATATCAATCTTGACCTAATCATGGTAGTGGGAGTGTACATAAAATAAACTCCAG AATT ] [+] EMBL SMAA28933 [ AATATCTCGGGACTAAAGATGATCTCTTTGACGGATGAT ACAAAAGTTCATT ACGGTCATGGGAGAAGACCT AAAAAAC AACGTAGGATTTAAAAGGAACATTTATATCATTCTTGACCTAATCATGGTAGTGGGAGTGTACATAAAATAAACTCCAG AATT ] [+] EMBL SMAA28918 [ AATATCTCGGGACTAAAGATGATCTCTTTGACGGATGAT ACAAAAGTTCATT ACGGTCATGGGAGAAGACCT AAAAAAC AACGTAGGATTTAAAAGGAACATTTATATCAATCTTGACCTAATCATGGTAGTGGGAGTGTACATAAAATAAACTCCAG AAT ] [-] EMBL AI394955 [ CTATGACGCATGAT ACAAAATTTCATT ACTGTCATGTGAGAAGACCT AAAAAAC AACTTAGGATCTAAAAGGAACATTTATATCAATCTTGACTTAATCATGGTAGTGTGAGTGTACATAAAATAAACTCCAG AATTTGGCCTATTTAAAAAAAAAAAAAATA] consensusID : consensus_10057#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 319 fasta sequence [GGCCAGAATTCGTCTCGAGGCCTGTCGATCGCGCAGTTGTGCTCTTTGAAGCTTTTAAAAATAGTAGGTTATGATATGCTCGAAGCACACTTCTAATTTGTTCCAGAATGTGTTTCGCTGGGCGTCCAGTCAGGTGGTTTTCAATAGTACAAATATACCAGACTTGAAAGCGCCAAGGTCTTTAAGTGCTGTTGCCGAGAAAACCGCACAACCAATTATTTTGGGCCATCATGTAGTTACAGAGGAATGTTTGACTTCATTAGTGGAAGATAAACAATATTACGAAACCCCCATCCTTCATTTGCTCTCAAGAAGAAAC] [+] EMBL CD077778 [GGCCAGAATTCGTCTCGAGGCCTGTCGATCGCGCAGTTGTGCTCTTTGAAGCTTTTAAAAATAGTAGGTTATGATATGCTCGAAGCACACTTCTAATTTGTTCCAGAATGTGTTTCGCTGGGCGTCCAGTCAGGTGGTTTTCAATAGTACAAATATACCAGACTTGAAAGCGCCAAGGTCTTTAAGTGCTGTTGCCGAGAAAACCGCACAACCAATTATTTTGGGCCATCATGTAGTTACAGAGGAATGTTTGACTTCATTAGTGGAAGATAAACAATATTACGAAACCCCCATCCTTCATTTGCTCTCAAGAAGAAAC] consensusID : consensus_10057#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 234 fasta sequence [ATGGGTTAGGGTCATGTTGGCTGCCTGTGCTTTCAGGTTTGAATATCTCGGNANTAAAGATGANCTCTCAGACGGATGATACAAAAGTTCATTACGGTCATGGGAGAAGACCTAAAAAACAACGTTGGATTTTAAAAGGAACATTTATATCANTCTTGCNCCTAANCATGGTAGGGGGAGTGTCCATAANATAANCTCCAGANTTTGNCCTTTTTTANNCCNNNANCCACCCCN] [+] EMBL SM371 [ATGGGTTAGGGTCATGTTGGCTGCCTGTGCTTTCAGGTTTGAATATCTCGGNANTAAAGATGANCTCTCAGACGGATGATACAAAAGTTCATTACGGTCATGGGAGAAGACCTAAAAAACAACGTTGGATTTTAAAAGGAACATTTATATCANTCTTGCNCCTAANCATGGTAGGGGGAGTGTCCATAANATAANCTCCAGANTTTGNCCTTTTTTANNCCNNNANCCACCCCN] consensusID : consensus_10057#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 176 fasta sequence [TTCGCGCAAGATATAAATGTCTTGCTGAAGGACACTTGCCTGTCGATCGCGCAGTTGTGCTCTTTGAAGCTTTTAAAAATAGTTATGATATGCTCGAAGCACATTTCTAATTTGTTCCAGAATGTGTTTCGCTGGGCGTCCAGTCAGGTGGCTTTCAATAGTACAAATATACCAGA] [+] EMBL CD148169 [TTCGCGCAAGATATAAATGTCTTGCTGAAGGACACTTGCCTGTCGATCGCGCAGTTGTGCTCTTTGAAGCTTTTAAAAATAGTTATGATATGCTCGAAGCACATTTCTAATTTGTTCCAGAATGTGTTTCGCTGGGCGTCCAGTCAGGTGGCTTTCAATAGTACAAATATACCAGA] consensusID : consensus_10057#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 172 fasta sequence [TTATTCGCGCAAGATATAAATGTCTTGCTGAAGGACACTTGCCTGTCGATCGCGCAGTTGTGCTCTTTGAAGCTTTTAAAAATAGTAGGTTATGATATGCTCGAAGCACACTTCTAAATGTGTTTCGCTGGGCGTCCAGTCGGGTGGTTTTCAATAGTACAAATATACCAGA] [+] EMBL CD097431 [TTATTCGCGCAAGATATAAATGTCTTGCTGAAGGACACTTGCCTGTCGATCGCGCAGTTGTGCTCTTTGAAGCTTTTAAAAATAGTAGGTTATGATATGCTCGAAGCACACTTCTAAATGTGTTTCGCTGGGCGTCCAGTCGGGTGGTTTTCAATAGTACAAATATACCAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10057#3 --------------------------TTCGCGCAAGATATAAAT---GTCTTGCTGAAGG 31 consensus_10057#4 -----------------------TTATTCGCGCAAGATATAAAT---GTCTTGCTGAAGG 34 consensus_10057#1 -----------------------------------GGCCAGAAT----TCGTCTCGAGG- 20 consensus_10057#0 -------------------------CGCGGCCAAAAATTCGGTTCGAGGCTTGCTGAAGG 35 consensus_10057#2 ATGGGTTAGGGTCATGTTGGCTGCCTGTGCTTTCAGGTTTGAATATCTCGGNANTAAAGA 60 * * * consensus_10057#3 ACACTTGCCTGTCG-ATCGCGCAG-------TTGTGCTCTTTG---AAGCTTTTAAAAAT 80 consensus_10057#4 ACACTTGCCTGTCG-ATCGCGCAG-------TTGTGCTCTTTG---AAGCTTTTAAAAAT 83 consensus_10057#1 -------CCTGTCG-ATCGCGCAG-------TTGTGCTCTTTG---AAGCTTTTAAAAAT 62 consensus_10057#0 ACACTTGCCTGTCG-ATCGCGCAG-------TTGTGCTCTTTG---AAGCTTTTAAAAAT 84 consensus_10057#2 TGANCTCTCAGACGGATGATACAAAAGTTCATTACGGTCATGGGAGAAGACCTAAAAAAC 120 * * ** ** ** ** * ** * * *** * ***** consensus_10057#3 AGT----TATGATATGCTCGAAGCACATTTCTAATTTGTTCCAGAATGTGTTTCGCTGGG 136 consensus_10057#4 AGTAGGTTATGATATGCTCGAAGCACACTTCTAA-----------ATGTGTTTCGCTGGG 132 consensus_10057#1 AGTAGGTTATGATATGCTCGAAGCACACTTCTAATTTGTTCCAGAATGTGTTTCGCTGGG 122 consensus_10057#0 AGT----TATGATATGCTCGAAGCACACTTCTAATTTGTTCCAGAATGTGTTTCGCTGGG 140 consensus_10057#2 AACGTTGGATTTTAAAAGGAACATTTATATCANTCTTGCNCCTAANCATGGTAGGGGGAG 180 * ** ** * * ** ** * * * * consensus_10057#3 CGTCCAGTCAGGTGGCTTTCAATAGTACAAATATACCAGA-------------------- 176 consensus_10057#4 CGTCCAGTCGGGTGGTTTTCAATAGTACAAATATACCAGA-------------------- 172 consensus_10057#1 CGTCCAGTCAGGTGGTTTTCAATAGTACAAATATACCAGACTTGAAAGCGCCAAGGTCTT 182 consensus_10057#0 CGTCCAGTCAGGTGGTTTTCAATAGTACAAATATACCAGACTTGAAAGCGCCAAGGTCTT 200 consensus_10057#2 TGTCCA-TAANATAANCTCCAGANTTTGNCCTTTTTTANNCCNNNANCCACCCCN----- 234 ***** * * * ** * * * * consensus_10057#3 ------------------------------------------------------------ consensus_10057#4 ------------------------------------------------------------ consensus_10057#1 TAAGTGCTGTTGCCGAGAAAACCGCACAACCAATTATTTTGGGCCATCATGTAGTTACAG 242 consensus_10057#0 TAAGTGCTGTTGCCGAGAAAACCGCACAACCAATTATTTTGGGCCATCATGTAGTTACAG 260 consensus_10057#2 ------------------------------------------------------------ consensus_10057#3 ------------------------------------------------------------ consensus_10057#4 ------------------------------------------------------------ consensus_10057#1 AGGAATGTTTGACTTCATTAGTGGAAGATAAACAATATTACGAAACCCCCATCCTTCATT 302 consensus_10057#0 AGGAATGTTTGACTTCATTAGTGGAAGATAAACAATATTACGAAACCCCCATCCTTCATT 320 consensus_10057#2 ------------------------------------------------------------ consensus_10057#3 ------------------------------------------------------------ consensus_10057#4 ------------------------------------------------------------ consensus_10057#1 TGCTCTCAAGAAGAAAC------------------------------------------- 319 consensus_10057#0 TGCTCTCAAGAAGAAACAACGTGGTTGCAACATTAACTGACTGTAATGGACGAGTTCTGA 380 consensus_10057#2 ------------------------------------------------------------ consensus_10057#3 ------------------------------------------------------------ consensus_10057#4 ------------------------------------------------------------ consensus_10057#1 ------------------------------------------------------------ consensus_10057#0 ATGGCACTAGTTGTGGTGCCGAAGGTTTCCGGAACGCTCGTAAAATGTCTACTGTTGCTT 440 consensus_10057#2 ------------------------------------------------------------ consensus_10057#3 ------------------------------------------------------------ consensus_10057#4 ------------------------------------------------------------ consensus_10057#1 ------------------------------------------------------------ consensus_10057#0 TTCAAACTGTGGGTATCTCCATAGGACTGAAGGCGAAAAAGCTTGGGATTGGGGCTGTGC 500 consensus_10057#2 ------------------------------------------------------------ consensus_10057#3 ------------------------------------------------------------ consensus_10057#4 ------------------------------------------------------------ consensus_10057#1 ------------------------------------------------------------ consensus_10057#0 GTGTTGTATTTAATGGGTTAGGGTCATGTAGGCTGCCTGTGCTTTCAGGTTTGAATATCT 560 consensus_10057#2 ------------------------------------------------------------ consensus_10057#3 ------------------------------------------------------------ consensus_10057#4 ------------------------------------------------------------ consensus_10057#1 ------------------------------------------------------------ consensus_10057#0 CGGGACTAAAGATGATCTCTTTGACGGATGATACAAAAGTTCATTACGGTCATGGGAGAA 620 consensus_10057#2 ------------------------------------------------------------ consensus_10057#3 ------------------------------------------------------------ consensus_10057#4 ------------------------------------------------------------ consensus_10057#1 ------------------------------------------------------------ consensus_10057#0 GACCTAAAAAACAACGTAGGATTTAAAAGGAACATTTATATCAATCTTGACCTAATCATG 680 consensus_10057#2 ------------------------------------------------------------ consensus_10057#3 ------------------------------------------------------------ consensus_10057#4 ------------------------------------------------------------ consensus_10057#1 ------------------------------------------------------------ consensus_10057#0 GTAGTGGGAGTGTACATAAAATAAACTCCAGAATTTGGCCTATTTAAAAAAAAAAAAAAT 740 consensus_10057#2 ------------------------------------------------------------ consensus_10057#3 - consensus_10057#4 - consensus_10057#1 - consensus_10057#0 A 741 consensus_10057#2 - |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||