These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10058#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 909 fasta sequence [AGTAGTAGTAACGGCGGTGATTGAATTGTTACTGTTGGCAAAAACCATCGGTTTCATGGTAATCGTAGATGATTTTATACAGGTATATTGATTAGTTTTAATCGTGTTAATGAAGATTTTATTAATTCTATCTGGGACTTAGCATGTTTAACTTCTAATTCAGCGAGATCAACTAAATTTTTATGGAAATATTTAATTCGACGAACTTTGAAATCTTCTAATTCAAGTTTAGCTGATTCTGAAATAGACTTGAAACGTTCATTAGCTGCAGTTTGTGCATCTTCCGCTGTTTGAACATCTTTCATACGTGCACGGGCTTTATCGAGATTACGATTAGCAGTTTCATAATCTGCTAATGCACGACATCGACGATAGAGTAGGTCACGTGCGGCTCCAGTATCAATGGCATAGTAACGAAATGTATCAGATAATTTTAAATCTTCATCCGAACTCAAACGAACTAGAATTTTTCGAAAGCTTTCAAAGAAGTTGGATAACAGAGTTGTCAAATCAGTTTCAGAAGTGATATTGCATTCTTTTGGAATTAGATTAGATAGAGCCAATTCAATTTGTAATAAAGTATTTGCATTAGTTTTACGACATTTCGATGCTAAATCCGCTGCTACCGTTGCATCTTTTATAGCTG-AATGATAAACAGCTAAGGTACATTTCTCTTCACAAAAGAAAGTATCATTATCGCGTTGATTATTTAACCACAAAGTTTCATCAGCTGATTTTGAGACAGATCTTAGAAAATCAACAGCCTTTTCTTTTCTTGTCTTATTTCGTACGTTTAATTCTTCTTCGAATTCCAGAAATACACGAAAACCATGATCATGCTTAAATGTTGGATGTGATGCTAGTCGTTGTAAAAACACTTCATGCATTGCAACTGTTTTCTTAAAAGTA] [-] EMBL CD166372 [AGTAGTAGTAACGGCGGTGATTGAATTGTTACTGTTGGCAAAAACCATCGGTTTCATGGTAATCGTAGATGATTTTATACAGGTATATTGATTAGTTTTAATCGTGTTAATGAAGATTTTATTAATTCTATCTGGGACTTAGCATGTTTAACTTCTAATTCAGCGAGATCAACTAAATTTTTATGGAAATATTTAATTCGACGAACTTTGAAATCTTCTAATTCAAGTTTAGCTGATTCTGAAATAGACTTGAAACct ] [+] EMBL CD202341 [ ATCGGTTTCATGGTAATCGTAGATGATTTTATACAGGTATATTGATTAGTTTTAATCGTGTTAATGAAGATTTTATTAATTCTATCTGGGACTTAGCATGTTTAACTTCTAATTCAGCGAGATCAACTAAATTTTTATGGAAATATTTAATTCGACGAACTTTGAAATCTTCTAATTCAAGTTTAGCTGATTCTGAAATAGACTTGAAACGTTCATTAGCTGCAGTTTGTGCATCTTCCGCTGTTTGAACATCTTTCATACGTGCACGGGCTTTATCGAGATTACGATTAGCAGTTTCATAATCTGCTAATGCACGACATCGACGATAGAGTAGGTCACGTGCGGCTCCAGTATCAATGGCATAGTAACGAAATGTATCAGATAATTTTAAATCTTCATCCGAACTCAAACGAACTAGAATTTTTCGAAAGCTTTCAAAGAAGTTGGATAACAGAGTTGTCAAATCAGTTTCAGAAGTGATATTGCATTCTTTTGGAATTAGATTAGATAAAGCCAATTCAATTTGTAATAAAGTATTTGCATTAGTTTTACGACATTTCGATGCTAAATCCGCTGCTACCGTTGCATCTTTTATAGCTGAAATGAT AACAGCTAAGGTACATTTCTCTTCACAAAAGAAAGTATCATTATCGCGTTGATTATTTAACCAC AAGTTTCATCAGCTGATTTTGAGACAGAT ] [-] EMBL CD153096 [ GGAAATATTTAATTCGACGANCTNTGAAATCTTCTAATTCAAGTTTAGCTGATTCTGAAATAGACTTGAAACGTTCATTAGCTGCAGTTTGTGCATCTTCCGCTGTTTGAACATCTTTCATACGTGCACGGGCTTTATCGAGATTACGATTAGCAGTTTCATAATCTGCTAATGCACGACATCGACGATAGAGTAGGTCACGTGCGGCTCCAGTATCAATGGCATAGTAACGAAATGTATCAGATAATTTTAAATCTTCATCCGAACTCAAACGAACTAGAATTTTTCGAAAGCTTTCAAAGAAGTTGGATAACAGAGTTGTCAAATCAGTTTCAGAAGTGATATTGCATTCTTTTGGAATTAGATTAGATAGAGCCAATTCAATTTGTAATAAAGTATTTGCATTAGTTTTACGACATTTCGATGCTAAATCCGCTGCTACCGTTGCATCTTTTATAGCTG AATGATAAACAGCTAAGGTACATTTCTCTTCACAAAAGAAAGTATCATTATCGCGTTGATTATTTAACCACAAAGTTTCATCAGCTGATTTTGAGACAGATC ] [-] EMBL CD153014 [ GAAATATTTAATTCGACGANCTTTGAAATCTTCTAATTCAAGTTTAGCTGATTCTGAAATAGACTTGAAACGTTCATTAGCTGCAGTTTGTGCATCTTCCGCTGTTTGAACATCTTTCATACGTGCACGGGCTTTATCGAGATTACGATTAGCAGTTTCATAATCTGCTAATGCACGACATCGACGATAGAGTAGGTCACGTGCGGCTCCAGTATCAATGGCATAGTAACGAAATGTATCAGATAATTTTAAATCTTCATCCGAACTCAAACGAACTAGAATCTTTCGAAAGCTTTCAAAGAAGTTGGATAACAGAGTTGTCAAATCAGTTTCAGAAGTGATATTGCATTCTTTTGGAATTAGATTAGATAGAGCCAATTCAATTTGTAATAAAGTATTTGCATTAGTTTTACGACATTTCGATGCTAAATCCGCTGCTACCGTTGCATCTTTTATAGCTG AATGATAAACAGCTAAGGTACATTTCTCTTCACAAAAGAAAGTATCATTATCGCGTTGATTATTTAACCACAAAGTTTCATCAGCTGATTTTGAGACAGATC ] [-] EMBL CD153294 [ GAACTNTGAAATCTTCTAATTCAAGTTTAGCTGATTCTGAAATAGACTTGAAACGTTCATTAGCTGCAGTTTGTGCATCTTCCGCTGTTTGAACATCTTTCATACGTGCACGGGCTTTATCGAGATTACGATTAGCAGTTTCATAATCTGCTAATGCACGACATCGACGATAGAGTAGGTCACGTGCGGCTCCAGTATCAATGGCATAGTAACGAAATGTATCAGATAATTTTAAATCTTCATCCGAACTCAAACGAACTAGAATTTTTCGAAAGCTTTCAAAGAAGTTGGATAACAGAGTTGTCAAATCAGTTTCAGAAGTGATATTGCATTCTTTTGGAATTAGATTAGATAGAGCCAATTCAATTTGTAATAAAGTATTTGCATTAGTTTTACGACATTTCGATGCTAAATCCGTTGCTACCGTTGCATCTTTTATAGCTG AATGATAAACAGCTAAGGTACATTTCTCTTCACAAAAGAAAGTATCATTATCGCGTTGATTATTTAACCACAAAGTTTCATCAGCTGATTTTGAGACAGATC ] [-] EMBL CD153394 [ AAATCTTCTAATTCAAGTTTAGCTGATTCTGAAATAGACTTGAAACGTTCATTAGCTGCAGTTTGTGCATCTTCCGCTGTTTGAACATCTTTCATACGTGCACGGGCTTTATCGAGATTACGATTAGCAGTTTCATAATCTGCTAATGCACGACATCGACGATAGAGTAGGTCACGTGCGGCTCCAGTATCAATGGCATAGTAACGAAATGTATCAGATAATTTTAAATCTTCATCCGAACTCAAACGAACTAGAATTTTTCGAAAGCTTTCAAAGAAGTTGGATAACAGAGTTGTCAAATCAGTTTCAGAAGTGATATTGCATTCTTTTGGAATTAGATTAGATAGAGCCAATTCAATTTGTAATAAAGTATTTGCATTAGTTTTACGACATTTCGATGCTAAATCCGCTGCTACCGTTGCATCTTTTATAGCTG AATGATAAACAGCTAAGGTACATTTCTCTTCACAAAAGAAAGTATCATTATCGCGTTGATTATTTAACCACAAAGTTTGATCAGCTGATTTTGAGACAGATCTTAGAAA ] [-] EMBL CD153048 [ AATTCAAGTTTAGCTGATTCTGAAATAGACTTGAAACGTTCATTAGCTGCAGTNTGTGCATCTTCCGCTGTTTGAACATCTTTCATACGTGCACGGGCTTTATCGAGATTACGATTAGCAGTTTCATAATCTGCTAATGCACGACATCGACGATAGAGTAGGTCACGTGCGGCTCCAGTATCAATGGCATAGTAACGAAATGTATCAGATAATTTTAAATCTTCATCCGAACTCAAACGAACTAGAATTTTTCGAAAGCTTTCAAAGAAGTTGGATAACAGAGTTGTCAAATCAGTTTCAGAAGTGATATTGCATTCTTTTGGAATTAGATTAGATAGAGCCAATTCAATTTGTAATAAAGTATTTGCATTAGTTTTACGACATTTCGATGCTAAATCCGCTGCTACCGTTGCATCTTTTATAGCTG AATGATAAACAGCTAAGGTACATTTCTCTTCACAAAAGAAAGTATCATTATCGCGTTGATTATTTAACCACAAAGTTTCATCAGCTGATTTTGAGACAGATC ] [-] EMBL CD114735 [ TTGAACATCTTTCATACGTGCACGGGCTTTATCGAGATTACGATTAGCAGTTTCATAATCTGCTAATGCACGACATCGACGATAGAGTAGGTCACGTGCGGCTCCAGTATCAATGGCATAGTAACGAAATGTATCAAATAATTTTAAATCTTCATCCGAACTCAAACGAACTAGAATTTTTCGAGAGCTTTCAAAGAAGTTGGATAACAGAGTTGTCAAATCAGTTTCAGAAGTGATATTGCATTCTTTTGGAATTAGATTAGATAGAGCCAATTCAATTTGTAATAAAGTATGGGCATTAGTTTTACGACATTTCGATGCTAAATCCGCTGCTACCGTTGCATCTTTTATAGCTG AATGATAAACAGCTAAGGTACATTTCTCTTCACAAAAGAAAGTATCATT ] [-] EMBL CD144394 [ TATTTGCATTAGTTTANCGACATTTCGATGCTAAATCCGCTGCTACCGTTGCATCTNTTATAGCTG AATGATAAACAGCTAAGGTACATTTCTCTTCACAAAAGAAAGTATCATTATCGCGTTGATTATTTAACCACAAAGTTTCATCAGCTGATTTTGAGACAGATCTTAGAAAATCAACAGCCTTTTCTTTTCTTGTCTTATTTCGTACGTTTAATTCTTCTTCGAATTCCAGAAATACACGAAAACCATGATCATGCTTAAATGTTG ] [-] EMBL CD181320 [ gtnnGCATCTTTTATAGCTG AATGATAAACAGCTAAGGTACATTTCTCTTCACAAAAGAAAGTATCATTATCGCGTTGATTATTTAACCACAAAGTTTCATCAGCTGATTTTGAGACAGATCTTAGAAAATCAACAGCCTTTTCTTTTCTTGTCTTATTTCGTACGTTTAATTCTTCTTCGAATTCCAGAAATACACGAAAACCATGATCATGCTTAAATGTTGGATGTGATGCTAGTCGTTGTAAAAACACTTCATGCATTGCAACTGTTTTCTTAAAAGTA] consensusID : consensus_10058#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 668 fasta sequence [AAATGGNATGTTATTNTTCGGTGAATTGGAATGGGCAATATTACTCGTAGTAGTAGTAACGNCGGTGATTGAATTGTTACTGTTGGCAAAAACCATCGGTTTCATGGTAATCGTAGATGATTTTATACAGGTATATTGATTAGTTTTAATCGTGTTAATGAAGATTTT-ATTAATTCTATCTGGGACTTAGCATGTTTAACTTCTAATTCAGCGAGATCAACTAAATTTTTATGGAAATATTTAATTCGACGAAC-TTTGAAATCTTCTAATTCAAGTTTAGCTGATTCTGAAATAGACTTGAAACGTTCATTAGCTGCAGTTTGTGCATCTTCCGCTGTTTGAACATCTTTCATACGTGCACGGGCTTTATCGAGATTACGATTAGCAGTTTCATAATCTGCTAATGCACGACATCGACGATAGAGTAGGTCACGTGCGGCTCCAGTATCAATGGCATAGTAACGAAATGTATCAGATAATTTTAAATCTTCATCCGAACTCAAACGAACTAGAATTTTTCGAAAGCTTTCAAAGAAGTTGGATAACAGAGTTGTCAAATCAGTTTCAGAAGTGATATTGCATTCTTTTGGAATTAGATTAGATAGAGCCAATTCAATTTGTAATAAAGTATTTGCATTAGTCCTCGTGCCGAATTNTTGGCTCGAGGG] [-] EMBL CD082700 [AAATGGNATGTTATTNTTCGGTGAATTGGAATGGGCAATATTACTCGTAGTAGTAGTAACGNCGGTGATTGAATTGTTACTGTTGGCAAAAACCATCGGTTTCATGGTAATCGTAGATGATTTTATACAGGTATATTGATTAGTTTTAATCGTGTTAATGAAGATTTT ATTAATTCTATCTGGGACTTAGCATGTTTAACTTCTAATTCAGCGAGATCAACTAAATTTTTATGGAAATATTTAATTCGACGAAC TTTGAAATCTTCTAATTCAAGTTTAGCTGATTCTGAAATAGACTTGAAACGTTCATTAGCTGCAGTTTGTGCATCTTCCGCTGTTTGAACATCTTTCATACGTGCACGGGCTTTATCGAGATTACGATTAGCAGTTTCATAATCTGCTAATGCACGACATCGACGATAGAGTAGGTCACGTGCGGCTCCAGTATCAATGGCATAGTAACGAAATGTATCAGATAATTTTAAATCTTCATCCGAACTCAAACGAACTAGAATTTTTCGAAAGCTTTCAAAGAAGTTGGATAACAGAGTTGTCAAATCAGTTTCAGAAGTGATATTGCATTCTTTTGGAATTAGATTAGATAGAGCCAATTCAATTTGTAATAAAGTATTTGCATTAGTCCTCGTGCCGAATTNTTGGCTCGAGGG] [+] EMBL CD153477 [ ATCGGTTTCATGGTAATCGTAGATGATTTTATACAGGTATATTGATTAGTTTTAATCGTGTTAATGAAGATTTT ATTAATTCTATCTGGGACTTAGCATGTTTAACTTCTAATTCAGCGAGATCAACTAAATTTTTATGGAAATATTTAATTCGACGAAC TTTGAAATCTTCTAATTCAAGTTTAGCTGATTCTGAAATAGACTTGAAACGTTCATTAGCTGCAGTTTGTGCATCTTCCGCTGTTTGAACATCTTTCATACGTGCACGGGCTTTATCGAGATCACGATTAGCAGTTTCATAATCTGCTAATGCACGACATCGACGATAGAGTAGGTCACGTGCGGCTCCAGTATCAATGGCATAGTAACGAAATGTATCAGATAATTTTAAATCTTCATCCGAACTCAAACGAACTAGAATTTTTCGAAAGCTTTCAAAGAAGTTGGATAACAGAGTTGTCAAATCAGTTTCAGAAGTGATATTGCATTCTTTT ] [-] EMBL BE505123 [ TTAATGAAGATTTTAATNAATTCTATCTGGGACTTAGCATGTTTAACTTCTAATTCNGCGAGATCAACTAAATTTTTATGGAAATATTTAATTCGACGAACTTTTGAAATCTTCTAATTCAAGTTTAGCTGATTCTGAAATAGACTTGAAACGTTCATTAGCTGCAGTTTGTGCATCTTCCGCTGTTTGAACATCTTTCATACGTGCACGGGCTTTATCGAGATTACGATTAGCAGTTTCATAATCTGCTAATGCACGACATCGACGATAGAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10058#0 ------------------------------------------------AGTAGTAGTAAC 12 consensus_10058#1 AAATGGNATGTTATTNTTCGGTGAATTGGAATGGGCAATATTACTCGTAGTAGTAGTAAC 60 ************ consensus_10058#0 GGCGGTGATTGAATTGTTACTGTTGGCAAAAACCATCGGTTTCATGGTAATCGTAGATGA 72 consensus_10058#1 GNCGGTGATTGAATTGTTACTGTTGGCAAAAACCATCGGTTTCATGGTAATCGTAGATGA 120 * ********************************************************** consensus_10058#0 TTTTATACAGGTATATTGATTAGTTTTAATCGTGTTAATGAAGATTTTATTAATTCTATC 132 consensus_10058#1 TTTTATACAGGTATATTGATTAGTTTTAATCGTGTTAATGAAGATTTTATTAATTCTATC 180 ************************************************************ consensus_10058#0 TGGGACTTAGCATGTTTAACTTCTAATTCAGCGAGATCAACTAAATTTTTATGGAAATAT 192 consensus_10058#1 TGGGACTTAGCATGTTTAACTTCTAATTCAGCGAGATCAACTAAATTTTTATGGAAATAT 240 ************************************************************ consensus_10058#0 TTAATTCGACGAACTTTGAAATCTTCTAATTCAAGTTTAGCTGATTCTGAAATAGACTTG 252 consensus_10058#1 TTAATTCGACGAACTTTGAAATCTTCTAATTCAAGTTTAGCTGATTCTGAAATAGACTTG 300 ************************************************************ consensus_10058#0 AAACGTTCATTAGCTGCAGTTTGTGCATCTTCCGCTGTTTGAACATCTTTCATACGTGCA 312 consensus_10058#1 AAACGTTCATTAGCTGCAGTTTGTGCATCTTCCGCTGTTTGAACATCTTTCATACGTGCA 360 ************************************************************ consensus_10058#0 CGGGCTTTATCGAGATTACGATTAGCAGTTTCATAATCTGCTAATGCACGACATCGACGA 372 consensus_10058#1 CGGGCTTTATCGAGATTACGATTAGCAGTTTCATAATCTGCTAATGCACGACATCGACGA 420 ************************************************************ consensus_10058#0 TAGAGTAGGTCACGTGCGGCTCCAGTATCAATGGCATAGTAACGAAATGTATCAGATAAT 432 consensus_10058#1 TAGAGTAGGTCACGTGCGGCTCCAGTATCAATGGCATAGTAACGAAATGTATCAGATAAT 480 ************************************************************ consensus_10058#0 TTTAAATCTTCATCCGAACTCAAACGAACTAGAATTTTTCGAAAGCTTTCAAAGAAGTTG 492 consensus_10058#1 TTTAAATCTTCATCCGAACTCAAACGAACTAGAATTTTTCGAAAGCTTTCAAAGAAGTTG 540 ************************************************************ consensus_10058#0 GATAACAGAGTTGTCAAATCAGTTTCAGAAGTGATATTGCATTCTTTTGGAATTAGATTA 552 consensus_10058#1 GATAACAGAGTTGTCAAATCAGTTTCAGAAGTGATATTGCATTCTTTTGGAATTAGATTA 600 ************************************************************ consensus_10058#0 GATAGAGCCAATTCAATTTGTAATAAAGTATTTGCATTAGTTTTACGACATTTCGA-TGC 611 consensus_10058#1 GATAGAGCCAATTCAATTTGTAATAAAGTATTTGCATTAGTCCT----CGTGCCGAATTN 656 ***************************************** * * * *** * consensus_10058#0 TAAATCCGCTGCTACCGTTGCATCTTTTATAGCTGAATGATAAACAGCTAAGGTACATTT 671 consensus_10058#1 TTGGCTCGAGGG------------------------------------------------ 668 * ** * consensus_10058#0 CTCTTCACAAAAGAAAGTATCATTATCGCGTTGATTATTTAACCACAAAGTTTCATCAGC 731 consensus_10058#1 ------------------------------------------------------------ consensus_10058#0 TGATTTTGAGACAGATCTTAGAAAATCAACAGCCTTTTCTTTTCTTGTCTTATTTCGTAC 791 consensus_10058#1 ------------------------------------------------------------ consensus_10058#0 GTTTAATTCTTCTTCGAATTCCAGAAATACACGAAAACCATGATCATGCTTAAATGTTGG 851 consensus_10058#1 ------------------------------------------------------------ consensus_10058#0 ATGTGATGCTAGTCGTTGTAAAAACACTTCATGCATTGCAACTGTTTTCTTAAAAGTA 909 consensus_10058#1 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Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||