These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10066#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 787 fasta sequence [GAGGTGTTTTCTATTACAGGATAGGAGTTTCTGAGGAGACAGCGACTTGAGATAA--T-GTTGACTAAAATCTTTTTCATCATATTTCTAATTGGTTTGAAGAGTACAATTTTCGGAGAATCTATTGAGAGTTCTATAAATGAATTTGAACAATTACACTGTCAATTAATTTGTGAAACATGTGTTATGAATGTTCGTGGTATCCGATGGTTAC-TTCTACAAAGTTATACACGAAAGACTATAGCTGAACTATTATCTGTATTGTGTAATTTCTTTCCATATAAACAACCTCGTGCTCAATGTAAACGTTTCTTTAAAGGACCATTTGAAGGGCTAGTTCATGATTTTGTTGTTAACATGAGTGTTTATGAACCATGTCAATATCTTGGACTTTGTGAAACAGTTCAAGAAGAATTGATGAAAAGTCCAGATGATTCATTCTATACAAATCTATTGATGAAAACATTGAGCATAGTAAAAGAAGATATAGAGTCAATTATTACACCAGAGTCTATTGAACAAGCAGCTACAAAACTTTGTTCTTCTGACAACACGTGTATAAGAACTTTCGAGAAATCTGCCATCGATTTCATCAGAGTTATTACTAAAAATTCAGAAGGTGAATGGTTCTCAGACGACTTTTGAAACT--AAGCTAACCGCTTTTGATTTCAGCTATTATTCATCATTTTGTTTAAACCATTCGAGAAAGTTCATAATAAATATTTAATTCGTAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA] [+] EMBL CD077608 [GAGGTGTTTTCTATTACAGGATAGGAGTTTCTGAGGAGACAGCGACTTGAGATAA T GTTGACTAAAATCTTTTTCATCATATTTCTAATTGGTTTGAAGAGTACAATTTTCGGAGAATCTATTGAGAGTTCTATAAATGAATTTGAACAATTACACTGTCAATTAATTTGTGAAACATGTGTTATGAATGTTCGTGGTATCCGATGGTTAC TTCTACAAAGTTATACACGAAAGACTATAGCTGAACTATTATCTGTATTGNGTAAat ] [+] EMBL CD082820 [ tTGTTTTCTATTACAGGATAGGAGTTTCTGAGGAGACAGCGACTTGAGATAA T GTTGACTAAAATCTTTTTCATCATATTTCTAATTGGTTTGAAGAGTACAATTTTCGGAGAATCTATTGAGAGTTCTATAAATGAATTTGAACAATTACACTGTCAATTAATTTGTGAAACATGTGTTATGAATGTTCGTGGTATCCGATGGTTAC TTCTACAAAGTTATACACGAAAGACTATAGCTGAACTATTATCTGTATTGTGTAATTTCTTTCCATATAAACAACCTCGTGCTCAATGTAAACGTTTCTTTAAAGGACCATTTGAAGGGCTAGTTCATGATTTTGTTGTTAACATGAGTGTTTATGAACCATGTCAATATCTTGGACTTTGTGAAACAGTTCAAGAAGAATTGATGAAAAGTCCAGATGATTCATTCTATACAAATCTATTGATGAAAACATTGAGCATAGTAAAAGAAGATATAGAGTCAATTATTACACCAGAGTCTATTGAACAAGCAGCTACAAAACTTTGTTCTTCTGACAACACGTGTATAAGAACTTTCGAGAAATCTGCCATCGATTTCATCAGAGTTATTACTAAAAATTCAGAAGGTGAATGGTTCTCAGACGACTTTTGAAACT AAGCNTACCGCTTTTGATTTCAGCTATTATTCATCATTTTGTTTAAACCATTCGAGAAAG TCATAATAAta ] [+] EMBL AI559029 [ GCGACTTGAGATAACGT GTTGACTAAAATCTTTTTCATCATATTTCTAATTGGTTTGAAGAGTACAATTTTCGGAGAATCTATTGAGAGTTCTATAAATGAATTTGAACAATTACACTGTCAATTAATTTGTGAAACATGTGTTATGAATGTTCGTGGTATCCGATGGTTAC TTCTACAAAGTTATACACGAAAGACTATAGCTGAACTATTATCTGTATTGTGTAATTTCTTTCCATATAAACAACCTCGTGCTCAATGTAAACGTT ] [+] EMBL AI559030 [ ACTTGAGATAA TAGCTGACTAAAATCTTTTTCATCATATTTCTAATTGGTTTGAAGAGTACAATTTTCGGAGAATCTATTGAGAGTTCTATAAATGAATTTGAACAATTACACTGTCAATTAATTTGTGAAACATGTGTTATGAATGTTCGTGGTATCCGATGGTTACTTTCTACAAAGTTATACACGAAAGACTATAGCTGAACTATTATCTGTATTGTGTAATTTCTCTCCATATAAACAACCTCGTGCTCAATGTAAACGT ] [+] EMBL CD079452 [ TTTTTCATCATATTTCTAATTGGTTTGAAGA AACAATTTTCGGAGAATCTATTGAGAGTTCTATAAATGAATTTGAACAATTACACTGTCAATTAATTTGTGAAACATGTGTTATGAATGTTCGTGGTATCCGATGGTTAC TTCTACAAAGTTATACACGAAAGACTATAGCTGAACTATTATCTGTATTGTGTAATTTCTTTCCATATAAACAACCTCGTGCTCAATGTAAACGTTTCTTTAAAGGACCATTTGAAGGGCTAGTTCATGATTTTGTTGTTAACATGAGTGTTTATGAACCATGTCAATATCTTGGACTTTGTGAAACAGTTCAAGAAGAATTGATGAAAAGTCCAGATGATTCATTCTATACAAATCTATTGATGAAAACATTGAGCATAGTAAAAGAAGATATAGAGTCAATTATTACACCAGAGTCTATTGAACAAGCAGCTACAAAACTTTGTTCTTCTGACAACACGTGTATAAGAACTTTCGAGAAATCTGCCATCGATTTCATCAGAGTTATTACTAAAAATTCAGAAGGTGAATGGTTCTCAGACGACTTTTGAAACT AAGCTAACCGCTTTTGATTTCAGCTATTATTCATCAT TNTAAACCATTCGAGAAAGTTCATAATANATAT ] [-] EMBL CD073723 [ GGTTTGAAGAGTACAATTTTCGGAGAATCTATTGAGAGTTCTATAAATGAATTTGAACAATTACACTGTCAATTAATTTGTGAAACATGTGTTATGAATGTTCGTGGTATCCGATGGTTAC TTCTACAAAGTTATACACGAAAGACTATAGCTGAACTATTATCTGTATTGTGTAATTTCTTTCCATATAAACAACCTCGTGCTCAATGTAAACGTTTCTTTAAAGGACCATTTGAAGGGCTAGTTCATGATTTTGTTGTTAACATGAGTGTTTATGAACCATGTCAATATCTTGGACTTTGTGAAACAGTTCAAGAAGAATTGATGAAAAGTCCAGATGATTCATTCTATACAAATCTATTGATGAAAACATTGAGCATAGTAAAAGAAGATATAGAGTCAATTATTACACCAGAGTCTATTGAACAAGCAGCTACAAAACTTTGTTCTTCTGACAACACGTGTATAAGAACTTTCGAGAAATCTGCCATCGATTTCATCAGAGTTATTACTAAAAATTCAGAAGGTGAATGGTTCTCAGACGACTTTTGAAACT AAGCTAACCGCTTTTGATTTCAGCTATTATTCATCA TTTG AAACCATTCGAGAAAGTTCATAATAAATAT ] [-] EMBL CD076409 [ GAGAATCTATTGAGAGTTCTATAAATGAATTTGAACAATTACACTGTCAATTAATTTGTGAAACATGTGTTATGAATGTTCGTGGTATCCGATGGTTAC TTCTACAAAGTTATACACGAAAGACTATAGCTGAACTATTATCTGTATTGTGTAATTTCTTTCCATATAAACAACCTCGTGCTCAATGTAAACGTTTCTTTAAAGGACCATTTGAAGGGCTAGTTCATGATTTTGTTGTTAACATGAGTGTTTATGAACCATGTCAATATCTTGGACTTTGTGAAACAGTTCAAGAAGAATTGATGAAAAGTCCAGATGATTCATTCTATACAAATCTATTGATGAAAACATTGAGCATAGTAAAAGAAGATATAGAGTCAATTATTACACCAGAGTCTATTGAACAAGCAGCTACAAAACTTTGTTCTTCTGACAACACGTGTATAAGAACTTTCGAGAAATCTGCCATCGATTTCATCAGAGTTATTACTAAAAATTCAGAAGGTGAATGGTTCTCAGACGACTTTTGAAACT AAGCTAACCGCTTTTGATTTCAGCTATTATTCATCATTTTGTTTAAACCATTCGAGAAAGTTCATAATAAATAT ] [+] EMBL AI976910 [ TTTCTTTCCATATAAACAACCTCGTGCTCAATGTAAACGTTTCTTTAAAGGACCATTTGAAGGGCTAGTTCATGATTTTGTTGTTAACATGAGTGTTTATGAACCATGTCAATATCTTGGACTTTGTGAAACAGTTCAAGAAGAATTGATGAAAAGTCCAGATGATTCATTCTATACAAATCTATTGATGAAAACATTGAGCATAGTAAAAGAAGATATAGAGTCAATTATTACACCAGAGTCTATTGAACAAGCAGCTACAAAACTTTGTTCTTCTGACAACACGTGTATAAGAACTTTCGAGAAATCTGCCATCGATTTCATCAG ] [-] EMBL AW016955 [ AACGTTTCTTTAAAGGACCATTTGAAGGGCTAGTTCATGATTTTGTTGTTAACATGAGTGTTTATGAACCATGTCAATATCTTGGACTTTGTGAAACAGTTCAAGAAGAATTGATGAAAAGTCCAGATGATTCATTCTATACAAATCTATTGATGAAAACATTGAGCATAGTAAAAGAAGATATAGAGTCAATTATTACACCAGAGTCTATTGAACAAGCAGCTACAAAACTTTGTTCTTCTGACAACACGTGTATAAGAACTTTCGAGAAATCTGCCATCGATTTCATCAGAGTTATTACTAAAAATTCAGAAGGTGAATGGTTCTCAGACGACTTTTGAAACT AAGCTAACCGCTTTTGATTTCAGCTATTATTCATCATTTTGTTTAAACCATTCGAGAAAGTTCATAATAAATATTTAATTCGTAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA] [+] EMBL CD077510 [ tcggcacGAGGGGCTAGTTCATGATTTTGTTGTTAACATGAGTGTTTATGAACCATGTCAATATCTTGGACTTTGTGAAACAGTTCAAGAAGAATTGATGAAAAGTCCAGATGATTCATTCTATACAAATCTATTGATGAAAACATTGAGCATAGTAAAAGAAGATATAGAGTCAATTATTACACCAGAGTCTATTGAACAAGCAGCTACAAAACTTTGTTCTTCTGACAACACGTGTATAAGAACTTTCGAGAAATCTGCCATCGATTTCATCAGAGNTATTACTAAAAATTCAGAA GTGAATGGTTCTCAGACGACTTTTGAAACTAAAAGCT ACCGC TTTGATTTCAGCTATTATTCATCATTTTG TTAAAACATTCGAGAAAAGTCAT ATAA ] consensusID : consensus_10066#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 665 fasta sequence [AGGGAGTTGTTTGTTTTCTATTACAGGATAGGAGTTTCTGAGGAGACAGCGACTTGAGATAATGTTGACTAAAATCTTTTTCATCATATTTCTAATTGGTTTGAAGAGTACAATTTTCGGAGAATCTATTGAGAGTTCTATAAATGAATTTGAACAATTACACTGTCAATTAATTT-GTGAAACA-TGTGTTATGAATGTTCGTGGTATCCGATGGTTACTTCTACAAAGTTATACACGAAAGACTATAGCTGAACTATTATCTGTATTGTGTAATTTCTTTCCATATAAACAACCCTCGTGCTCAATGTAAACGTTTCTTTAAAGGACCATTTGAAGGGCTAGTTCATGATTTTGTTGTTAACATGAGTGTTTATGAACCATGTCAATATCTTGGACTTTGTGAAACAGTTCAAGAAGAATTGATGAAAAGTCCAGATGATTCATTCTATACAAATCTATTGATGAAAACATTGAGCATAGTAAAAGAAGATATAGAGTCAATTATTACACCAGAGTCTATTGAACAAGCAGCTACAAAACTTTGTTCTTCTACAACACGTGTATAAGAACTTTCGAGAAATCTGCCATCGATTTCTTCAGAGTTATTACTAAAATTACGAATAAATTACTAGCACGTATCAATGACACTTAGAGTTGAAGTGAAC] [+] EMBL BF936581 [AGGGAGTTGTTTGTTTTCTATTACAGGATAGGAGTTTCTGAGGAGACAGCGACTTGAGATAATGTTGACTAAAATCTTTTTCATCATATTTCTAATTGGTTTGAAGAGTACAATTTTCGGAGAATCTATTGAGAGTTCTATAAATGAATTTGAACAATTACACTGTCAATTAATTT GTGAAACA TGTGTTATGAATGTTCGTGGTATCCGATGGTTACTTCTACAAAGTTATACACGAAAGACTATAGCTGAACTATTATCTGTATTGTGTAATTTCTTTCCATATAAACAACCCTCGTGCTCAATGTAAACGTTTCTTTAAAGGACCATTTGAAGGGCTAGTTCATGATTTTGTTGTTAACATGAGTGTTTATGAACCATGTCAATATCTTGGACTTTGTGAAACAGTTCAAGAAGAATTGATGAAAAGTCCAGATGATTCATTCTATACAAATCTATTGATGAAAACATTGAGCATAGTAAAAGAAGATATAGAGTCAATTATTACACCAGAGTCTATTGAACAAGCAGCTACAAAACTTTGTTCTTCTACAACACGTGTATAAGAACTTTCGAGAAATCTGCCATCGATTTCTTCAGAGTTATTACTAAAATTACGAATAAATTACTAGCACGTATCAATGACACTTAGAGTTGAAGTGAAC] [+] EMBL AI559044 [ ACTTGAGATAATGTTGACTAAAATCTTTTTCATCATATTTCTAATTGGTTTGAAGAGTACAATTTTCGGAGAATCTATTGAGAGTTCTATAAATGAATTTGAACAATTACACTGTCAATTAATTTGGTGAAACATTGTGTTATGAATGTTCGTGGTATCCGATGGTTACTTCTACAAATTTt ] consensusID : consensus_10066#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 466 fasta sequence [CTCGAGGCCAGAATTCGGCACAGGTGATTATTTAGGTTTGAAGAGTACAATTTTCGGAGAATCTATTGAGAGTTCTATAAATGAATTTGAACAATTACACTGTCAATTAATGTAAACGTTTCTTTAAAGGACCATTTGAAGGGCTAGTTCATGATTTTGTTGTTAACATGAGTGTTTATGAACCATGTCAATATCTTGGACTTTGTGAAACAGTTCAAGAAGAATTGATGAAAAGTCCAGATGATTCATTCTATACAAATCTATTGATGAAAACATTGAGCATAGTAAAAGAAGATATAGAGTCAATTATTACACCAGAGTCTATTGAACAAGCAGCTACAAAACTTTGTTCTTCTGACAACACGTGTTTAAGAACTTTCGAGAAATCTGCCATCGATTTCATCAGAGTTATTACTAAAATTACGAATAAATTTACTAGCACGTATCAATGACAACTAGAAGTGAA] [+] EMBL CD084208 [CTCGAGGCCAGAATTCGGCACAGGTGATTATTTAGGTTTGAAGAGTACAATTTTCGGAGAATCTATTGAGAGTTCTATAAATGAATTTGAACAATTACACTGTCAATTAATGTAAACGTTTCTTTAAAGGACCATTTGAAGGGCTAGTTCATGATTTTGTTGTTAACATGAGTGTTTATGAACCATGTCAATATCTTGGACTTTGTGAAACAGTTCAAGAAGAATTGATGAAAAGTCCAGATGATTCATTCTATACAAATCTATTGATGAAAACATTGAGCATAGTAAAAGAAGATATAGAGTCAATTATTACACCAGAGTCTATTGAACAAGCAGCTACAAAACTTTGTTCTTCTGACAACACGTGTTTAAGAACTTTCGAGAAATCTGCCATCGATTTCATCAGAGTTATTACTAAAATTACGAATAAATTTACTAGCACGTATCAATGACAACTAGAAGTGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10066#0 -------GAGGTGTTTTCTATTACAGGATAGGAGTTTCTGAGGAGACAGCGACTTGAGAT 53 consensus_10066#1 AGGGAGTTGTTTGTTTTCTATTACAGGATAGGAGTTTCTGAGGAGACAGCGACTTGAGAT 60 consensus_10066#2 ------------------------------------------------------------ consensus_10066#0 AATGTTGACTAAAATCTTTTTCATCATATTTCTAATTGGTTTGAAGAGTACAATTTTCGG 113 consensus_10066#1 AATGTTGACTAAAATCTTTTTCATCATATTTCTAATTGGTTTGAAGAGTACAATTTTCGG 120 consensus_10066#2 ------------------------------------------------------------ consensus_10066#0 AGAATCTATTGAGAGTTCTATAAATGAATTTGAACAATTACACTGTCAATTAATTTGTGA 173 consensus_10066#1 AGAATCTATTGAGAGTTCTATAAATGAATTTGAACAATTACACTGTCAATTAATTTGTGA 180 consensus_10066#2 ------------------------------------------------------------ consensus_10066#0 AACATGTGTTATGAATGTTCGTGGTATCCGATGGTTACTTCTACAAAGTTATACACGAAA 233 consensus_10066#1 AACATGTGTTATGAATGTTCGTGGTATCCGATGGTTACTTCTACAAAGTTATACACGAAA 240 consensus_10066#2 ----CTCGAGGCCAGAATTCGGCACA---GGTGATTATTT----AGGTTTGAAGAGTACA 49 * * **** * * ** *** ** * ** * * * * consensus_10066#0 GACTATAGCTGAACTATTATCTGTATTGTGTAATTTCTTTCCATATAAACAACC-TCGTG 292 consensus_10066#1 GACTATAGCTGAACTATTATCTGTATTGTGTAATTTCTTTCCATATAAACAACCCTCGTG 300 consensus_10066#2 ATTTTCGGAGAATCTATTGAGAGTTCTATA-AATGAATTTGAACA---ATTACACTGTCA 105 * * * ***** ** * * *** *** * * * ** * consensus_10066#0 CTCAATGTAAACGTTTCTTTAAAGGACCATTTGAAGGGCTAGTTCATGATTTTGTTGTTA 352 consensus_10066#1 CTCAATGTAAACGTTTCTTTAAAGGACCATTTGAAGGGCTAGTTCATGATTTTGTTGTTA 360 consensus_10066#2 ATTAATGTAAACGTTTCTTTAAAGGACCATTTGAAGGGCTAGTTCATGATTTTGTTGTTA 165 * ********************************************************* consensus_10066#0 ACATGAGTGTTTATGAACCATGTCAATATCTTGGACTTTGTGAAACAGTTCAAGAAGAAT 412 consensus_10066#1 ACATGAGTGTTTATGAACCATGTCAATATCTTGGACTTTGTGAAACAGTTCAAGAAGAAT 420 consensus_10066#2 ACATGAGTGTTTATGAACCATGTCAATATCTTGGACTTTGTGAAACAGTTCAAGAAGAAT 225 ************************************************************ consensus_10066#0 TGATGAAAAGTCCAGATGATTCATTCTATACAAATCTATTGATGAAAACATTGAGCATAG 472 consensus_10066#1 TGATGAAAAGTCCAGATGATTCATTCTATACAAATCTATTGATGAAAACATTGAGCATAG 480 consensus_10066#2 TGATGAAAAGTCCAGATGATTCATTCTATACAAATCTATTGATGAAAACATTGAGCATAG 285 ************************************************************ consensus_10066#0 TAAAAGAAGATATAGAGTCAATTATTACACCAGAGTCTATTGAACAAGCAGCTACAAAAC 532 consensus_10066#1 TAAAAGAAGATATAGAGTCAATTATTACACCAGAGTCTATTGAACAAGCAGCTACAAAAC 540 consensus_10066#2 TAAAAGAAGATATAGAGTCAATTATTACACCAGAGTCTATTGAACAAGCAGCTACAAAAC 345 ************************************************************ consensus_10066#0 TTTGTTCTTCTGACAACACGTGTATAAGAACTTTCGAGAAATCTGCCATCGATTTCATCA 592 consensus_10066#1 TTTGTTCTTCT-ACAACACGTGTATAAGAACTTTCGAGAAATCTGCCATCGATTTCTTCA 599 consensus_10066#2 TTTGTTCTTCTGACAACACGTGTTTAAGAACTTTCGAGAAATCTGCCATCGATTTCATCA 405 *********** *********** ******************************** *** consensus_10066#0 GAGTTATTACTAAAAATTCAGA-AGGTG-AATGGTTCTCA--GACGACTTTTGAAACTAA 648 consensus_10066#1 GAGTTATTACTAAAATTACGAATAAATT-ACTAGCACGTATCAATGACACTTAGAGTTGA 658 consensus_10066#2 GAGTTATTACTAAAATTACGAATAAATTTACTAGCACGTATCAATGACAACTAGAAGTGA 465 *************** * * * * * * * * * * * *** * * * * consensus_10066#0 GCTAACCGCTTTTGATTTCAGCTATTATTCATCATTTTGTTTAAACCATTCGAGAAAGTT 708 consensus_10066#1 AGTGAAC----------------------------------------------------- 665 consensus_10066#2 A----------------------------------------------------------- 466 consensus_10066#0 CATAATAAATATTTAATTCGTAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGC 768 consensus_10066#1 ------------------------------------------------------------ consensus_10066#2 ------------------------------------------------------------ consensus_10066#0 TGCATTACCGTACTGCGTA 787 consensus_10066#1 ------------------- consensus_10066#2 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||