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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10066#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 787 fasta sequence
[GAGGTGTTTTCTATTACAGGATAGGAGTTTCTGAGGAGACAGCGACTTGAGATAA--T-GTTGACTAAAATCTTTTTCATCATATTTCTAATTGGTTTGAAGAGTACAATTTTCGGAGAATCTATTGAGAGTTCTATAAATGAATTTGAACAATTACACTGTCAATTAATTTGTGAAACATGTGTTATGAATGTTCGTGGTATCCGATGGTTAC-TTCTACAAAGTTATACACGAAAGACTATAGCTGAACTATTATCTGTATTGTGTAATTTCTTTCCATATAAACAACCTCGTGCTCAATGTAAACGTTTCTTTAAAGGACCATTTGAAGGGCTAGTTCATGATTTTGTTGTTAACATGAGTGTTTATGAACCATGTCAATATCTTGGACTTTGTGAAACAGTTCAAGAAGAATTGATGAAAAGTCCAGATGATTCATTCTATACAAATCTATTGATGAAAACATTGAGCATAGTAAAAGAAGATATAGAGTCAATTATTACACCAGAGTCTATTGAACAAGCAGCTACAAAACTTTGTTCTTCTGACAACACGTGTATAAGAACTTTCGAGAAATCTGCCATCGATTTCATCAGAGTTATTACTAAAAATTCAGAAGGTGAATGGTTCTCAGACGACTTTTGAAACT--AAGCTAACCGCTTTTGATTTCAGCTATTATTCATCATTTTGTTTAAACCATTCGAGAAAGTTCATAATAAATATTTAATTCGTAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA]
[+] EMBL CD077608 [GAGGTGTTTTCTATTACAGGATAGGAGTTTCTGAGGAGACAGCGACTTGAGATAA T GTTGACTAAAATCTTTTTCATCATATTTCTAATTGGTTTGAAGAGTACAATTTTCGGAGAATCTATTGAGAGTTCTATAAATGAATTTGAACAATTACACTGTCAATTAATTTGTGAAACATGTGTTATGAATGTTCGTGGTATCCGATGGTTAC TTCTACAAAGTTATACACGAAAGACTATAGCTGAACTATTATCTGTATTGNGTAAat ]
[+] EMBL CD082820 [ tTGTTTTCTATTACAGGATAGGAGTTTCTGAGGAGACAGCGACTTGAGATAA T GTTGACTAAAATCTTTTTCATCATATTTCTAATTGGTTTGAAGAGTACAATTTTCGGAGAATCTATTGAGAGTTCTATAAATGAATTTGAACAATTACACTGTCAATTAATTTGTGAAACATGTGTTATGAATGTTCGTGGTATCCGATGGTTAC TTCTACAAAGTTATACACGAAAGACTATAGCTGAACTATTATCTGTATTGTGTAATTTCTTTCCATATAAACAACCTCGTGCTCAATGTAAACGTTTCTTTAAAGGACCATTTGAAGGGCTAGTTCATGATTTTGTTGTTAACATGAGTGTTTATGAACCATGTCAATATCTTGGACTTTGTGAAACAGTTCAAGAAGAATTGATGAAAAGTCCAGATGATTCATTCTATACAAATCTATTGATGAAAACATTGAGCATAGTAAAAGAAGATATAGAGTCAATTATTACACCAGAGTCTATTGAACAAGCAGCTACAAAACTTTGTTCTTCTGACAACACGTGTATAAGAACTTTCGAGAAATCTGCCATCGATTTCATCAGAGTTATTACTAAAAATTCAGAAGGTGAATGGTTCTCAGACGACTTTTGAAACT AAGCNTACCGCTTTTGATTTCAGCTATTATTCATCATTTTGTTTAAACCATTCGAGAAAG TCATAATAAta ]
[+] EMBL AI559029 [ GCGACTTGAGATAACGT GTTGACTAAAATCTTTTTCATCATATTTCTAATTGGTTTGAAGAGTACAATTTTCGGAGAATCTATTGAGAGTTCTATAAATGAATTTGAACAATTACACTGTCAATTAATTTGTGAAACATGTGTTATGAATGTTCGTGGTATCCGATGGTTAC TTCTACAAAGTTATACACGAAAGACTATAGCTGAACTATTATCTGTATTGTGTAATTTCTTTCCATATAAACAACCTCGTGCTCAATGTAAACGTT ]
[+] EMBL AI559030 [ ACTTGAGATAA TAGCTGACTAAAATCTTTTTCATCATATTTCTAATTGGTTTGAAGAGTACAATTTTCGGAGAATCTATTGAGAGTTCTATAAATGAATTTGAACAATTACACTGTCAATTAATTTGTGAAACATGTGTTATGAATGTTCGTGGTATCCGATGGTTACTTTCTACAAAGTTATACACGAAAGACTATAGCTGAACTATTATCTGTATTGTGTAATTTCTCTCCATATAAACAACCTCGTGCTCAATGTAAACGT ]
[+] EMBL CD079452 [ TTTTTCATCATATTTCTAATTGGTTTGAAGA AACAATTTTCGGAGAATCTATTGAGAGTTCTATAAATGAATTTGAACAATTACACTGTCAATTAATTTGTGAAACATGTGTTATGAATGTTCGTGGTATCCGATGGTTAC TTCTACAAAGTTATACACGAAAGACTATAGCTGAACTATTATCTGTATTGTGTAATTTCTTTCCATATAAACAACCTCGTGCTCAATGTAAACGTTTCTTTAAAGGACCATTTGAAGGGCTAGTTCATGATTTTGTTGTTAACATGAGTGTTTATGAACCATGTCAATATCTTGGACTTTGTGAAACAGTTCAAGAAGAATTGATGAAAAGTCCAGATGATTCATTCTATACAAATCTATTGATGAAAACATTGAGCATAGTAAAAGAAGATATAGAGTCAATTATTACACCAGAGTCTATTGAACAAGCAGCTACAAAACTTTGTTCTTCTGACAACACGTGTATAAGAACTTTCGAGAAATCTGCCATCGATTTCATCAGAGTTATTACTAAAAATTCAGAAGGTGAATGGTTCTCAGACGACTTTTGAAACT AAGCTAACCGCTTTTGATTTCAGCTATTATTCATCAT TNTAAACCATTCGAGAAAGTTCATAATANATAT ]
[-] EMBL CD073723 [ GGTTTGAAGAGTACAATTTTCGGAGAATCTATTGAGAGTTCTATAAATGAATTTGAACAATTACACTGTCAATTAATTTGTGAAACATGTGTTATGAATGTTCGTGGTATCCGATGGTTAC TTCTACAAAGTTATACACGAAAGACTATAGCTGAACTATTATCTGTATTGTGTAATTTCTTTCCATATAAACAACCTCGTGCTCAATGTAAACGTTTCTTTAAAGGACCATTTGAAGGGCTAGTTCATGATTTTGTTGTTAACATGAGTGTTTATGAACCATGTCAATATCTTGGACTTTGTGAAACAGTTCAAGAAGAATTGATGAAAAGTCCAGATGATTCATTCTATACAAATCTATTGATGAAAACATTGAGCATAGTAAAAGAAGATATAGAGTCAATTATTACACCAGAGTCTATTGAACAAGCAGCTACAAAACTTTGTTCTTCTGACAACACGTGTATAAGAACTTTCGAGAAATCTGCCATCGATTTCATCAGAGTTATTACTAAAAATTCAGAAGGTGAATGGTTCTCAGACGACTTTTGAAACT AAGCTAACCGCTTTTGATTTCAGCTATTATTCATCA TTTG AAACCATTCGAGAAAGTTCATAATAAATAT ]
[-] EMBL CD076409 [ GAGAATCTATTGAGAGTTCTATAAATGAATTTGAACAATTACACTGTCAATTAATTTGTGAAACATGTGTTATGAATGTTCGTGGTATCCGATGGTTAC TTCTACAAAGTTATACACGAAAGACTATAGCTGAACTATTATCTGTATTGTGTAATTTCTTTCCATATAAACAACCTCGTGCTCAATGTAAACGTTTCTTTAAAGGACCATTTGAAGGGCTAGTTCATGATTTTGTTGTTAACATGAGTGTTTATGAACCATGTCAATATCTTGGACTTTGTGAAACAGTTCAAGAAGAATTGATGAAAAGTCCAGATGATTCATTCTATACAAATCTATTGATGAAAACATTGAGCATAGTAAAAGAAGATATAGAGTCAATTATTACACCAGAGTCTATTGAACAAGCAGCTACAAAACTTTGTTCTTCTGACAACACGTGTATAAGAACTTTCGAGAAATCTGCCATCGATTTCATCAGAGTTATTACTAAAAATTCAGAAGGTGAATGGTTCTCAGACGACTTTTGAAACT AAGCTAACCGCTTTTGATTTCAGCTATTATTCATCATTTTGTTTAAACCATTCGAGAAAGTTCATAATAAATAT ]
[+] EMBL AI976910 [ TTTCTTTCCATATAAACAACCTCGTGCTCAATGTAAACGTTTCTTTAAAGGACCATTTGAAGGGCTAGTTCATGATTTTGTTGTTAACATGAGTGTTTATGAACCATGTCAATATCTTGGACTTTGTGAAACAGTTCAAGAAGAATTGATGAAAAGTCCAGATGATTCATTCTATACAAATCTATTGATGAAAACATTGAGCATAGTAAAAGAAGATATAGAGTCAATTATTACACCAGAGTCTATTGAACAAGCAGCTACAAAACTTTGTTCTTCTGACAACACGTGTATAAGAACTTTCGAGAAATCTGCCATCGATTTCATCAG ]
[-] EMBL AW016955 [ AACGTTTCTTTAAAGGACCATTTGAAGGGCTAGTTCATGATTTTGTTGTTAACATGAGTGTTTATGAACCATGTCAATATCTTGGACTTTGTGAAACAGTTCAAGAAGAATTGATGAAAAGTCCAGATGATTCATTCTATACAAATCTATTGATGAAAACATTGAGCATAGTAAAAGAAGATATAGAGTCAATTATTACACCAGAGTCTATTGAACAAGCAGCTACAAAACTTTGTTCTTCTGACAACACGTGTATAAGAACTTTCGAGAAATCTGCCATCGATTTCATCAGAGTTATTACTAAAAATTCAGAAGGTGAATGGTTCTCAGACGACTTTTGAAACT AAGCTAACCGCTTTTGATTTCAGCTATTATTCATCATTTTGTTTAAACCATTCGAGAAAGTTCATAATAAATATTTAATTCGTAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA]
[+] EMBL CD077510 [ tcggcacGAGGGGCTAGTTCATGATTTTGTTGTTAACATGAGTGTTTATGAACCATGTCAATATCTTGGACTTTGTGAAACAGTTCAAGAAGAATTGATGAAAAGTCCAGATGATTCATTCTATACAAATCTATTGATGAAAACATTGAGCATAGTAAAAGAAGATATAGAGTCAATTATTACACCAGAGTCTATTGAACAAGCAGCTACAAAACTTTGTTCTTCTGACAACACGTGTATAAGAACTTTCGAGAAATCTGCCATCGATTTCATCAGAGNTATTACTAAAAATTCAGAA GTGAATGGTTCTCAGACGACTTTTGAAACTAAAAGCT ACCGC TTTGATTTCAGCTATTATTCATCATTTTG TTAAAACATTCGAGAAAAGTCAT ATAA ]
consensusID : consensus_10066#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 665 fasta sequence
[AGGGAGTTGTTTGTTTTCTATTACAGGATAGGAGTTTCTGAGGAGACAGCGACTTGAGATAATGTTGACTAAAATCTTTTTCATCATATTTCTAATTGGTTTGAAGAGTACAATTTTCGGAGAATCTATTGAGAGTTCTATAAATGAATTTGAACAATTACACTGTCAATTAATTT-GTGAAACA-TGTGTTATGAATGTTCGTGGTATCCGATGGTTACTTCTACAAAGTTATACACGAAAGACTATAGCTGAACTATTATCTGTATTGTGTAATTTCTTTCCATATAAACAACCCTCGTGCTCAATGTAAACGTTTCTTTAAAGGACCATTTGAAGGGCTAGTTCATGATTTTGTTGTTAACATGAGTGTTTATGAACCATGTCAATATCTTGGACTTTGTGAAACAGTTCAAGAAGAATTGATGAAAAGTCCAGATGATTCATTCTATACAAATCTATTGATGAAAACATTGAGCATAGTAAAAGAAGATATAGAGTCAATTATTACACCAGAGTCTATTGAACAAGCAGCTACAAAACTTTGTTCTTCTACAACACGTGTATAAGAACTTTCGAGAAATCTGCCATCGATTTCTTCAGAGTTATTACTAAAATTACGAATAAATTACTAGCACGTATCAATGACACTTAGAGTTGAAGTGAAC]
[+] EMBL BF936581 [AGGGAGTTGTTTGTTTTCTATTACAGGATAGGAGTTTCTGAGGAGACAGCGACTTGAGATAATGTTGACTAAAATCTTTTTCATCATATTTCTAATTGGTTTGAAGAGTACAATTTTCGGAGAATCTATTGAGAGTTCTATAAATGAATTTGAACAATTACACTGTCAATTAATTT GTGAAACA TGTGTTATGAATGTTCGTGGTATCCGATGGTTACTTCTACAAAGTTATACACGAAAGACTATAGCTGAACTATTATCTGTATTGTGTAATTTCTTTCCATATAAACAACCCTCGTGCTCAATGTAAACGTTTCTTTAAAGGACCATTTGAAGGGCTAGTTCATGATTTTGTTGTTAACATGAGTGTTTATGAACCATGTCAATATCTTGGACTTTGTGAAACAGTTCAAGAAGAATTGATGAAAAGTCCAGATGATTCATTCTATACAAATCTATTGATGAAAACATTGAGCATAGTAAAAGAAGATATAGAGTCAATTATTACACCAGAGTCTATTGAACAAGCAGCTACAAAACTTTGTTCTTCTACAACACGTGTATAAGAACTTTCGAGAAATCTGCCATCGATTTCTTCAGAGTTATTACTAAAATTACGAATAAATTACTAGCACGTATCAATGACACTTAGAGTTGAAGTGAAC]
[+] EMBL AI559044 [ ACTTGAGATAATGTTGACTAAAATCTTTTTCATCATATTTCTAATTGGTTTGAAGAGTACAATTTTCGGAGAATCTATTGAGAGTTCTATAAATGAATTTGAACAATTACACTGTCAATTAATTTGGTGAAACATTGTGTTATGAATGTTCGTGGTATCCGATGGTTACTTCTACAAATTTt ]
consensusID : consensus_10066#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 466 fasta sequence
[CTCGAGGCCAGAATTCGGCACAGGTGATTATTTAGGTTTGAAGAGTACAATTTTCGGAGAATCTATTGAGAGTTCTATAAATGAATTTGAACAATTACACTGTCAATTAATGTAAACGTTTCTTTAAAGGACCATTTGAAGGGCTAGTTCATGATTTTGTTGTTAACATGAGTGTTTATGAACCATGTCAATATCTTGGACTTTGTGAAACAGTTCAAGAAGAATTGATGAAAAGTCCAGATGATTCATTCTATACAAATCTATTGATGAAAACATTGAGCATAGTAAAAGAAGATATAGAGTCAATTATTACACCAGAGTCTATTGAACAAGCAGCTACAAAACTTTGTTCTTCTGACAACACGTGTTTAAGAACTTTCGAGAAATCTGCCATCGATTTCATCAGAGTTATTACTAAAATTACGAATAAATTTACTAGCACGTATCAATGACAACTAGAAGTGAA]
[+] EMBL CD084208 [CTCGAGGCCAGAATTCGGCACAGGTGATTATTTAGGTTTGAAGAGTACAATTTTCGGAGAATCTATTGAGAGTTCTATAAATGAATTTGAACAATTACACTGTCAATTAATGTAAACGTTTCTTTAAAGGACCATTTGAAGGGCTAGTTCATGATTTTGTTGTTAACATGAGTGTTTATGAACCATGTCAATATCTTGGACTTTGTGAAACAGTTCAAGAAGAATTGATGAAAAGTCCAGATGATTCATTCTATACAAATCTATTGATGAAAACATTGAGCATAGTAAAAGAAGATATAGAGTCAATTATTACACCAGAGTCTATTGAACAAGCAGCTACAAAACTTTGTTCTTCTGACAACACGTGTTTAAGAACTTTCGAGAAATCTGCCATCGATTTCATCAGAGTTATTACTAAAATTACGAATAAATTTACTAGCACGTATCAATGACAACTAGAAGTGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10066#0 -------GAGGTGTTTTCTATTACAGGATAGGAGTTTCTGAGGAGACAGCGACTTGAGAT 53
consensus_10066#1 AGGGAGTTGTTTGTTTTCTATTACAGGATAGGAGTTTCTGAGGAGACAGCGACTTGAGAT 60
consensus_10066#2 ------------------------------------------------------------
consensus_10066#0 AATGTTGACTAAAATCTTTTTCATCATATTTCTAATTGGTTTGAAGAGTACAATTTTCGG 113
consensus_10066#1 AATGTTGACTAAAATCTTTTTCATCATATTTCTAATTGGTTTGAAGAGTACAATTTTCGG 120
consensus_10066#2 ------------------------------------------------------------
consensus_10066#0 AGAATCTATTGAGAGTTCTATAAATGAATTTGAACAATTACACTGTCAATTAATTTGTGA 173
consensus_10066#1 AGAATCTATTGAGAGTTCTATAAATGAATTTGAACAATTACACTGTCAATTAATTTGTGA 180
consensus_10066#2 ------------------------------------------------------------
consensus_10066#0 AACATGTGTTATGAATGTTCGTGGTATCCGATGGTTACTTCTACAAAGTTATACACGAAA 233
consensus_10066#1 AACATGTGTTATGAATGTTCGTGGTATCCGATGGTTACTTCTACAAAGTTATACACGAAA 240
consensus_10066#2 ----CTCGAGGCCAGAATTCGGCACA---GGTGATTATTT----AGGTTTGAAGAGTACA 49
* * **** * * ** *** ** * ** * * * *
consensus_10066#0 GACTATAGCTGAACTATTATCTGTATTGTGTAATTTCTTTCCATATAAACAACC-TCGTG 292
consensus_10066#1 GACTATAGCTGAACTATTATCTGTATTGTGTAATTTCTTTCCATATAAACAACCCTCGTG 300
consensus_10066#2 ATTTTCGGAGAATCTATTGAGAGTTCTATA-AATGAATTTGAACA---ATTACACTGTCA 105
* * * ***** ** * * *** *** * * * ** *
consensus_10066#0 CTCAATGTAAACGTTTCTTTAAAGGACCATTTGAAGGGCTAGTTCATGATTTTGTTGTTA 352
consensus_10066#1 CTCAATGTAAACGTTTCTTTAAAGGACCATTTGAAGGGCTAGTTCATGATTTTGTTGTTA 360
consensus_10066#2 ATTAATGTAAACGTTTCTTTAAAGGACCATTTGAAGGGCTAGTTCATGATTTTGTTGTTA 165
* *********************************************************
consensus_10066#0 ACATGAGTGTTTATGAACCATGTCAATATCTTGGACTTTGTGAAACAGTTCAAGAAGAAT 412
consensus_10066#1 ACATGAGTGTTTATGAACCATGTCAATATCTTGGACTTTGTGAAACAGTTCAAGAAGAAT 420
consensus_10066#2 ACATGAGTGTTTATGAACCATGTCAATATCTTGGACTTTGTGAAACAGTTCAAGAAGAAT 225
************************************************************
consensus_10066#0 TGATGAAAAGTCCAGATGATTCATTCTATACAAATCTATTGATGAAAACATTGAGCATAG 472
consensus_10066#1 TGATGAAAAGTCCAGATGATTCATTCTATACAAATCTATTGATGAAAACATTGAGCATAG 480
consensus_10066#2 TGATGAAAAGTCCAGATGATTCATTCTATACAAATCTATTGATGAAAACATTGAGCATAG 285
************************************************************
consensus_10066#0 TAAAAGAAGATATAGAGTCAATTATTACACCAGAGTCTATTGAACAAGCAGCTACAAAAC 532
consensus_10066#1 TAAAAGAAGATATAGAGTCAATTATTACACCAGAGTCTATTGAACAAGCAGCTACAAAAC 540
consensus_10066#2 TAAAAGAAGATATAGAGTCAATTATTACACCAGAGTCTATTGAACAAGCAGCTACAAAAC 345
************************************************************
consensus_10066#0 TTTGTTCTTCTGACAACACGTGTATAAGAACTTTCGAGAAATCTGCCATCGATTTCATCA 592
consensus_10066#1 TTTGTTCTTCT-ACAACACGTGTATAAGAACTTTCGAGAAATCTGCCATCGATTTCTTCA 599
consensus_10066#2 TTTGTTCTTCTGACAACACGTGTTTAAGAACTTTCGAGAAATCTGCCATCGATTTCATCA 405
*********** *********** ******************************** ***
consensus_10066#0 GAGTTATTACTAAAAATTCAGA-AGGTG-AATGGTTCTCA--GACGACTTTTGAAACTAA 648
consensus_10066#1 GAGTTATTACTAAAATTACGAATAAATT-ACTAGCACGTATCAATGACACTTAGAGTTGA 658
consensus_10066#2 GAGTTATTACTAAAATTACGAATAAATTTACTAGCACGTATCAATGACAACTAGAAGTGA 465
*************** * * * * * * * * * * * *** * * * *
consensus_10066#0 GCTAACCGCTTTTGATTTCAGCTATTATTCATCATTTTGTTTAAACCATTCGAGAAAGTT 708
consensus_10066#1 AGTGAAC----------------------------------------------------- 665
consensus_10066#2 A----------------------------------------------------------- 466
consensus_10066#0 CATAATAAATATTTAATTCGTAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGC 768
consensus_10066#1 ------------------------------------------------------------
consensus_10066#2 ------------------------------------------------------------
consensus_10066#0 TGCATTACCGTACTGCGTA 787
consensus_10066#1 -------------------
consensus_10066#2 -------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||