These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10074#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 826 fasta sequence [TAAATGAATACTGACACATCTGTTGAACGTCACTTTGCTGATAACTGAACATTACCTGATTAGACGTTAAATCATTAGACACATAAGAATTATGACTTGAGTAAAATGGAACAGAACTTTGCTGATTCACTGACTGATCATCTGAAGATCTATACATAGAAGTAATCTGGTTGGAAGCACTATGATCATGTGAATATTGTAGACGGGGATTTTCGAAATTACAAGTAGGAGATTGGGAATTTCGCACAAAGCTAGTACTGTGAGGATAAGATGAATGACCATGCAGAAGTTGACTGGTATTGTTTATACGAGCATTCTTATTTGACTTCAAAGGTAACGTTTGATATGATCCGACGACTGACGACATTTGAGGAGTGACTGGCATGCCATCAACGGTAATGGATGCACAGTGGAGAGTATTGGGATAACTGCCAGACAGTTGGTCACGAGAATCATGATCAGAGAATTGTTCATTGACAATTTGTTCTGTAACCTGGTTATCAAAAATACTAGGAGTTGAGTGATTTGTTCCAGAAGGCTGATTAGATGGATATGAAGATGAAGATGGAGAAGAGACTTTCAAAGGAGTTGCAGCTTCTTGCTGACCCCATGTGGAAGCATTATTAGGACCAACACTGCAACTGCTGCTACTGCTCCAACATTCATGTCCAGAGTCAGTGCTTGGTAGTGACGATGTGTTTGTTAGCTTACATCCAGTTATTCCAGTGGGAGATTTCGATTCAGAAATAGCTTCCTTGACAGTGACTAAAACAACCTCTGAAGAATCAAGACCCTTAGGTGTAGAAGATGTCAGCATGGGCATGTC] [+] EMBL CD178577 [TAAATGAATACTGACACATCTGTTGAACGTCACTTTGCTGATAACTGAACATTACCTGATTAGACGTTAAATCATTAGACACATAAGAATTATGACTTGAGTAAAATGGAACAGAACTTTGCTGATTCACTGACTGATCATCTGAAGATCTATACATAGAAGTAATCTGGTTGGAAGCACTATGATCATGTGAATATTGTAGACGGGGATTTTCGAAATTACAAGTAGGAGATTGGGAATTTCGCACAAAGCTAGTACTGTGAGGATAAGATGAATGACCATGCAGAAGTTGACTGGTATTGTTTATACGAGCATTCTTATTTGACTTCAAAGGTAACGTTTGATATGATCCGACGACTGACGACATTTGAGGAGTGACTGGCATGCCATCAACGGTAATGGATGCACAGTGGAGAGTATTGGGATAACTGCCAGACAGTTGGTCACGAGAATCATGATCAGAGAATTGTTCATTGACAATTTGTTCTGTAACCTGGTTATCAAAAATACTAGGAGTTGAGTGA ] [+] EMBL CD167560 [ AAAGCTAGTACTGTGAGGATAAGATGAATGACCATGCAGAAGTTGACTGGTATTGTTTATACGAGCATTCTTATTTGACTTCAAAGGTAACGTTTGATATGATCCGACGACTGACGA ] [+] EMBL CD124758 [ GGAGTGACTGGCATGCCATCAACGGTAATGGATGCACAGTGGAGAGTATTGGGATAACTGCCAGACAGTTGGTCACGAGAATCATGATCAGAGAATTGTTCATTGACAATTTGTTCTGTAACCTGGTTATCAAAAATACTAGGAGTTGAGTGATTTGTTCCAGAAGGCTGATTAGACGGATATGAAGATGAAGATGGAGAAGAGACTTTCAAAGGAGCTGCAGCTTCTTGCTGACCCCATGTGGAAGCATTATTAGGACCAACACTGCAACTGCTGCTACTGCTCCAACATTCATGTCCAGAGTCAGTGCTTGGTAGTGACGATGTGTTTGTTAGCTTACATCCAGTTATTCCAGTGGGAGATTTCGATTCAGAAAT ] [+] EMBL CD124668 [ GGAGTGACTGGCATGCCATCAACGGTAATGGATGCACAGTGGAGAGTATTGGGATAACTGCCAGACAGTTGGTCACGAGAATCATGATCAGAGAATTGTTCATTGACAATTTGTTTTGTAACCTGGTTATCAAAAATACTAGGAGTTGAGTGATTTGTTCCAGAAGGCTGATTAGATGGATATGAAGATGAAGATGGAGAAGTGACTTTCAAAGGAGTTGCAGCTTCTTGCTGACCCCATGTGGAAGCATTATTAGGACCAACACTGCAACTGCTGCTACTGCTCCAACATTCATGTCCAGAGTCAGTGCTTGGTAGTGACGATGTGTTTGTTAGCTTACATCCAGTTATTCCAGTGGGAGATTTCGATTCAGAAAT ] [+] EMBL CD124715 [ GGAGTGACTGGCATGCCATCAACGGTAATGGATGCACAGTGGAGAGTATTGGGATAACTGCCAGACAGTTGGTCACGAGAATCATGATCAGAGAATTGTTCATTGACAATTTGTTCTGCAACCTGGTTATCAAAAATACTAGGAGTTGAGTGATTTGTTCCAGAAGGCTGATTAGATGGATATGAAGATGAAGATGGAGAAGAGACTTTCAAAGGAGTTGCAGCTTCTTGCTGACCCCATGTGTAAGCATTATTAGGACCAACACTGCAACTGCTGCTACTGCTCCAACATTCATGTCCAGAGTCAGTGCTTGGTAGTGACGATGTGTTTGTTAGCTTACATCCAGTTATTCCAGTGGGAGATTTCGATTCAGAAAT ] [+] EMBL CD124742 [ GGAGTGACTGGCATGCCATCAACGGTAATGGATGCACAGTGGAGAGTATTGGGATAACTGCCAGACAGTTGGTCACGAGAATCATGATCCGAGAATTGTTCATTGACAATTTGTTCTGTAACCTGGTTATCAAAAATACTAGGAGTTGAGTGATTTGTTCCAGAAGGCTGATTAGATGGATATGAAGATGAAGATGGAGAAGAGACTTTCAAAGGAGTTGCAGCTTCTTGCTGACCCCATGTGGAAGCATTATTAGGACCAACACTGCAACTGCTGCTACTGCTCCAACGTTCATGTCCAGAGTCAGTGCTTGGTAGTGACGATGTGTTTGTTAGCTTACATCCAGTTATTCCAGTGGGAGATTTCGATTCAGAAAT ] [+] EMBL CD124667 [ GGAGTGACTGGCATGCCATCAACGGTAATGGATGCACAGTGGAGAGTATTGGGATAACTGCCAGACAGTTGGTCACGAGAATCATGATCAGAGAATTGTTCATTGACAATTTGTTCTGTAACCTGGTTATCAAAAATACTAGGAGTTGAGTGATTTGTTCCAGAAGGCTGATTAGATGGATATGAAGATGAAGATGGAGAAGAGACTTTCAAAGGAGTTGCAGCTTCTTGCTGACCCCATGTGGAAGCATTATTAGGACCAACACTGCAACTGCTGCTACTGCTCCAACATTCATGTCCAGAGTCAGTGCTTGGTAGTGACGATGTGTTTGTTAGCTTACACCCAGTTATTCCAGTGGGAGATTTCGATTCAGAAAT ] [+] EMBL CD124695 [ GGAGTGACTGGCATGCCATCAACGGTAATGGATGCACAGTGGAGAGTATTGGGATAACTGCCAGACAGTTGGTCACGAGAATCATGATCAGAGAATTGTTCATTGACAATTTGTTCTGTAACCTGGTTATCAAAAATACTAGGAGTTGAGTGATTTGTTCCAGAAGGCTGATTAGATGGATATGAAGATGAAGATGGAGAAGAGACTTTCAAAGGAGTTGCAGCTTCTTGCTGACCCCATGTGGAAGCATTATTAGGACCAACACTGCAACTGCTGCTACTGCTCCAACATTCATGTCCAGAGTCAGTGCTTGGTAGTGACGATGTGTTTGTTAGCTTACACCCAGTTATTCCAGTGGGAGATTTCGATTCAGAAAT ] [-] EMBL CD124830 [ GAGTGACTGGCATGCCATCAACGGTAATGGATGCACAGTGGAGAGTATTGGGGTAACTGCCAGACAGTTGGTCACGAGAATCATGATCAGAGAATTGT ] [-] EMBL CD116376 [ CGATGTGTTTGTTAGCTTACATCCAGTTATTCCAGTGGGAGATTTCGATTCAGAAATAGCTTCCTTGACAGTGACTAAAACAACCTCTGAAGAATCAAGACCCTTAGGTGTAGAAGATGTCAGCATGGGCATGTC] consensusID : consensus_10074#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence [CAATTGGTTCACACAGAATCTGGTCCAAAACTATATTCGGAGCATTTGTCGAATCTAAAATCTGCTCCACTACATCAGGTTCAGTCATACGATTAGTAGGTGGGTTATTCGGACTAAAAGACAGTGATTTTACATTAGAATAGACATTATTTTGTGAGAATTCCTGCTGTTCCTGCAAAGACACGCTATTCACAATTTCACATGATAACTGAATATCATTGTCCAATGTGTTTGGATCACGTTGGTAATAATGAACTGACTGGTTTGACACGGGAAGAGAATATAGAGACTGGATATGAGCATCACCCGAAGGGTTAATCGAACGGGTTTTGTTCACAGATAAACATCGTTCATTATGGAACAACGGCATATTACTATTGGATGTATTTTCAAAGGGTCTATTGATTTGGTTTGACATACGGATAAATGAATGAGGTTTCTGCTCGAAGCTTTTAAGGACTGGGTGGTTGAATAACATACTATCAGTGTCTTCCGAGACACAAC] [+] EMBL CD190808 [CAATTGGTTCACACAGAATCTGGTCCAAAACTATATTCGGAGCATTTGTCGAATCTAAAATCTGCTCCACTACATCAGGTTCAGTCATACGATTAGTAGGTGGGTTATTCGGACTAAAAGACAGTGATTTTACATTAGAATAGACATTATTTTGTGAGAATTCCTGCTGTTCCTGCAAAGACACGCTATTCACAATTTCACATGATAACTGAATATCATTGTCCAATGTGTTTGGATCACGTTGGTAATAATGAACTGACTGGTTTGACACGGGAAGAGAATATAGAGACTGGATATGAGCATCACCCGAAGGGTTAATCGAACGGGTTTTGTTCACAGATAAACATCGTTCATTATGGAACAACGGCATATTACTATTGGATGTATTTTCAAAGGGTCTATTGATTTGGTTTGACATACGGATAAATGAATGAGGTTTCTGCTCGAAGCTTTTAAGGACTGGGTGGTTGAATAACATACTATCAGTGTCTTCCGAGACACAAC] consensusID : consensus_10074#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 328 fasta sequence [TACATCAGTTTCATTAGGGTTATAGTTNTGATATTCTGACTGGACGTATGAGGAATGATAAGTTGGTTCTGAATGTAAGGATGATGGATTAAATGAATACTGACACATCTGTTGAACGTCACTTTGCTGATAACTGAACATTACCTGATTAGACGTTAAATCATTAGACACATAAGAATTATGACTTGAGTAAAATGGAACAGAACTTTGCTGATTCACTGACTGATCATCTGAAGATCTATACATAGAAGTAATCTGGTTGGAAGCACTATGATCATGTGAATATCATTGTCCAATGTGTTTGGATCACGTTGGTAATAATGAACTG] [-] EMBL CD070558 [TACATCAGTTTCATTAGGGTTATAGTTNTGATATTCTGACTGGACGTATGAGGAATGATAAGTTGGTTCTGAATGTAAGGATGATGGATTAAATGAATACTGACACATCTGTTGAACGTCACTTTGCTGATAACTGAACATTACCTGATTAGACGTTAAATCATTAGACACATAAGAATTATGACTTGAGTAAAATGGAACAGAACTTTGCTGATTCACTGACTGATCATCTGAAGATCTATACATAGAAGTAATCTGGTTGGAAGCACTATGATCATGTGAATATCATTGTCCAATGTGTTTGGATCACGTTGGTAATAATGAACTG] consensusID : consensus_10074#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 141 fasta sequence [AGCCCGGTACCCGAGTTTTTAAAGGAGCTGCGGCTTCTTGCTGACCCCATGTGGAAGCATTATTAGGACCAACACTGCAACTGCTGCTACTGCTCCAACATTCATGTCCAGAGTCAGTGCTTGGTAGTGACGATGTGTTTG] [+] EMBL CD168089 [AGCCCGGTACCCGAGTTTTTAAAGGAGCTGCGGCTTCTTGCTGACCCCATGTGGAAGCATTATTAGGACCAACACTGCAACTGCTGCTACTGCTCCAACATTCATGTCCAGAGTCAGTGCTTGGTAGTGACGATGTGTTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10074#0 TAAATGAATACTGACACATCTGTTGAACGTCACTTTGCTGATAACTGAACATTACCTGAT 60 consensus_10074#3 ------------------------------------------------------------ consensus_10074#2 ------------------------------------------------------------ consensus_10074#1 ------------------------------------------------------------ consensus_10074#0 TAGACGTTAAATCATTAGACACATAAGAATTATGACTTGAGTAAAATGGAACAGAACTTT 120 consensus_10074#3 ------------------------------------------------------------ consensus_10074#2 ------------------------------------------------------------ consensus_10074#1 ------------------------------------------------------------ consensus_10074#0 GCTGATTCACTGACTGATCATCTGAAGATCTATACATAGAAGTAATCTGGTTGGAAGCAC 180 consensus_10074#3 ------------------------------------------------------------ consensus_10074#2 ------------------------------------------------------------ consensus_10074#1 ------------------------------------------------------------ consensus_10074#0 TATGATCATGTGAATATTGTAGACGGGGATTTTCGAAATTACAAGTAGGAGATTGGGAAT 240 consensus_10074#3 ------------------------------------------------------------ consensus_10074#2 ------------------------------------------------------------ consensus_10074#1 ------------------------------------------------------------ consensus_10074#0 TTCGCACAAAGCTAGTACTGTGAGGATAAGATGAATGACCATGCAGAAGTTGACTGGTAT 300 consensus_10074#3 ------------------------------------------------------------ consensus_10074#2 ------------------------------------------------------------ consensus_10074#1 ------------------------------------------------------------ consensus_10074#0 TGTTTATACGAGCATTCTTATTTGACTTCAAAGGTAACGTTTGATATGATCCGACGACTG 360 consensus_10074#3 ------------------------------------------------------------ consensus_10074#2 ------------------------------------------------------------ consensus_10074#1 --------------CAATTGGTTCACACAGAATCTGGTCCAAAACTATATTCGGAGCATT 46 consensus_10074#0 ACGACATTTGAGGAGTGACTGGCATGCCATCAACGGTAATG----GATGCACAGTGGAGA 416 consensus_10074#3 ------------------------------------------------------------ consensus_10074#2 -------------------------TACATCAGTTTCATTA----GGGTTATAGTTNTGA 31 consensus_10074#1 TGTCGAATCTAAAATCTGCTC-CACTACATCAGGTTCAGTCATACGATTAGTAGGTGGGT 105 consensus_10074#0 GTATTGGGATAACTGCCAGACAGTTGGTCACGAGAATCATGATCAGAGAATTGTTCATTG 476 consensus_10074#3 ------------------------------------------------------------ consensus_10074#2 TATTCTGACTGGACGTATGAGGAATGATAAGTTGGTTCTGAATGTAAGGATGATGGATTA 91 consensus_10074#1 TATTCGGACTAAAAGACAGTGATTTTAC-ATTAGAATAGACATTATTTTGTGAGAATTCC 164 consensus_10074#0 ACAATTTGTTCTGTAACCTGGTTATCAAAAATACTAGGAGTTGAGTGATTTGTTCCAGAA 536 consensus_10074#3 ------------------------------------------------------------ consensus_10074#2 AATGAATACTGACACATCTGTTGAACGTCACT--TTGCTGATAACTGAACATTACCTGAT 149 consensus_10074#1 TGCTGTTCCTGCAAAGACACGCTATTCACAATTTCACATGATAACTGAATATCATTGTCC 224 consensus_10074#0 GGCTGATT-AGATGG--ATATGAAGATGAAGATGGA-GAAGAGACT---TTCAAAGGAGT 589 consensus_10074#3 ----------------------------AGCCCGGT-ACCCGAGTT---TTTAAAGGAGC 28 consensus_10074#2 TAGACGTT-AAATCA--TTAGACACATAAGAATTATGACTTGAGTAAAATGGAACAGAAC 206 consensus_10074#1 AATGTGTTTGGATCACGTTGGTAATAATGAACTGACTGGTTTGACAC--GGGAAGAGAAT 282 ** ** consensus_10074#0 T--GCAGCTTC--TTGCTGACCCCATGTGGAAGCATTATTAGGACCAAC---ACTGCAAC 642 consensus_10074#3 T--GCGGCTTC--TTGCTGACCCCATGTGGAAGCATTATTAGGACCAAC---ACTGCAAC 81 consensus_10074#2 TTTGCTGATTCACTGACTGATCATCTGAAGATCTATACATAGAAGTAATCTGGTTGGAAG 266 consensus_10074#1 ATAGAGACTGGATATGAGCATCACCCGAAGGGTTAATCGAACGGGTTTTGTTCACAGATA 342 * * * * * * * * * consensus_10074#0 TGCTGCTACTGCTCCAACATTCATGTCCAGAGTCAGTG---CTTGGTAGTGACGATGTGT 699 consensus_10074#3 TGCTGCTACTGCTCCAACATTCATGTCCAGAGTCAGTG---CTTGGTAGTGACGATGTGT 138 consensus_10074#2 CACTATGATCATGTGAATATCATTGTCCAATGTGTTTGGATCACGTTGGTAATAATGAAC 326 consensus_10074#1 AACATCGTTCATTATGGAACAACGGCATATTACTATTGGATGTATTTTCAAAGGGTCTAT 402 * * * * ** * * * consensus_10074#0 TTGTTAGCTTACATCCAGTTATTCCAGTGGGAGATTTCGATTCAGAAATAGCTTCCTTGA 759 consensus_10074#3 TTG--------------------------------------------------------- 141 consensus_10074#2 TG---------------------------------------------------------- 328 consensus_10074#1 TGATTTGGTTTGACATACGGATAAATGAATGAGGTTTCTGCTCGAAGCTTTTAAGGACTG 462 * consensus_10074#0 CAGTGACTAAAACAACCTCTGAAGAATCAAGACCCTTAGGTGTAGAAGATGTCAGCATGG 819 consensus_10074#3 ------------------------------------------------------------ consensus_10074#2 ------------------------------------------------------------ consensus_10074#1 GGTGGTTGAATAACATACTATCAGTGTCTTCCGAGACACAAC------------------ 504 consensus_10074#0 GCATGTC 826 consensus_10074#3 ------- consensus_10074#2 ------- consensus_10074#1 ------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||