These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10075#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1506 fasta sequence [TTTATTACCAACTCAGCTGACTGATCGATGGCACTAGCTAATTCTGGGGCTCGACCAGTGTAACTTAAAAACAACCACGTGAACAATGATACTAAAGCAATATAAAATGGTAGGGCCAATATACCCGAAACCATTGATAAACCAATAAATTCTGATATTCCTGTAACAATATGGAAAATTAGTAGAACAACAGCCAAAACAGCAGGAGTACGAAATGTCTGGAATATATCCTTCTTAGAGTTTGACATCCGATAATCTTCTCCCAGTTGTTTTAATGTTTCTTTTAAGCGCTCCAAATAACCTGCAGAGAAAGCCTCACCGCCCATTTTAGGAATTGTGTTAAATTTCTGAACAGCAGCCTTATATATTTTTAAATGAGCTGAATCTAAATCAGTTGGATTGATGTACGGCCGATCAGGTCCACAAATCTTGTTCATAGCCTCCGAATACATCTCTTGACATGTTAATATCGCATTAAGGTTGTTTGCCTCGGCAGTTGCTTCCAACATAGAACGTGGTTCTGGAAGAGTATCACTTTCGTAAATTTTTATATATGCTTTGAAATAAGTAAAAAGTTCACGACACGTAACTTCCTGACCATTTATGTTTTTAACAACCAGATTAACTGGAGCTAACAAATGAGGGACTAAAGCGATAAGATTTTCAACGAAGCTAGGATCGATATCTTTTACTCGTCCATCAAATTTTGGATTTGTTGAAACTTTAAGACCGGGATGAGGCATTAGGAAACAATCCAACTTGGAAAAACAAGAGCGAATATGACGGCGGACAGCTTGGTGCTCTGTGTGATGCTGTTGAACAATCTTGAGGCGATTATCGAGCAGTTGATTACCACCATTATTCCCGAAGTCATACTCGTACGGGAAACTCCAATCACGAACAAGGAATAAAAGATGCTGGAAAGGTGTCCCTGAAATATCAGATTCTAAGGCGAGTCGACCATATTCAGTGAATAAATGCAAATGCTGCAGGTGATCTTCTTGAATATTACCATGAATGTTGTAAACTTGAGTACTACTAACCATTGTACTCAAAGCGAAAACCGTAGCACACTGACGCACAGCACTAGTACTATCAAAAGAACCCTGTGTATCCATTAACAGAACGACTACTTCCTCTCCAGATGGTAGAGTCATAAAGAATGGTTCGCTCCATAACAATATTCCAACAGTGTCTCTCTCCGAACCACCTCGCCAAGGAAAGCCCTTCAAAGGTGTTTCTGGGTCTCCTAGCCAGTTAGTACGGTCACTGGACAACAAATAACGTAGGAAAAAATCCAGTAAAAACGATTTTCCTTGACGAAACGCACCAGCAACTGAGACCACAACAACTTTTTTGTCACGCACATCCGGTCTTAAAAGAATTGAAGACAAAGACTCCTCATCTAGAGTGAATGATGTTTTCTTCATACATTCTTCAACATTTATAATTTGAACTGCATGTCCATCTGCGGCAACCATCCTCTACCAGTAAGTAACGCACTAT] [+] EMBL CD160959 [TTTATTACCAACTCAGCTGACTGATCGATGGCACTAGCTAATTCTGGGGCTCGACCAGTGTAACTTAAAAACAACCACGTGAACAATGATACTAAAGCAATATAAAATGGTAGGGCCAATATACCCGAAACCATTGATAAACCAATAAATTCTGATATTCCTGTAACAATATGGAAAATTAGTAGAACAACAGCCAAAACAGCAGGAGTACGAAATGTCTGGAATATATCCTTCTTAGAGTTTGACATCCGATAATCTTCTCCCAGTTGTTTTAATGTTTCTTTTAAGCGCTCCAAATAACCTGCAGAGAAAGCCTCACCGCCCATTTTAGGAATTGTGTTAAATTTCTGAACAGCAGCCTTATATATTTTTAAATGAGCTGAATCTAAATCAGTTGGATTGATGTACGGCCGATCAGGTCCACAAATCTTGTTCATAGCCTCCGAATACATCTCTTGACATGTTAATATCGCATTAAGGTTGTTTGCCTCGGCAGTTGCTTCCAACATAGAACGTGGTTCTGGAAGAGTATCACTTTCGTAAATTTTTATATATGCTTTGAAATAAGTAAAAAGTTCACGACACGTAACTTCCTGACCATTTATGTNTTTAACAACCAGATTAACTGGAG ] [-] EMBL CD111822 [ tTGTACCAATATGGAAAATTAGTAGAACAACAGCCAAAACAGCAGGAGTACGAAATGTCTGGAATATATCCTTCTTAGAGTTT CATCCGATAATCTTCTCCCAGTTGTTTTAATGTTTCTTTTAAGCGCTCCAAATAACCTGCAGAGAAAGCCTCACCGCCCATTTTAGGAATTGTGTTAAATTTCTGAACAGCAGCCTTATATATTTTTAAATGAGCTGAATCTAAATCAGTTGGATTGATGTACGGCCGATCAGGTCCACAAATCTTGTTCATAGCCTCCGAATACATCTCTTGACATGTTAATATCGCATTAAGG ] [-] EMBL CD179533 [ CAGTTGCTTCCAACATAGAACGTGGTTCTGGAAGAGTATCACTTTCGTAAATTTTTATATATGCTTTGAAATAAGTAAAAAGTTCACGACACGTAACTTCCTGACCATTTATGTTTTTAACAACCAGATTAACTGGAGCTAACAAATGAGGGACTAAAGCGATAAGATTTTCAACGAAGCTAGGATCGATATCTTTTACTCGTCCATCAAATTTTGGATTTGTTGAAACTTTAAGACCGGGATGAGGCATTAGGAAACAATCCAACTTGGAAAAACAAGAGCGAATATGACGGCGGACAGCTTGGTGCTCTGTGTGATGCTGTTGAACAATCTTGAGGCGATTATCGAGCAGTTGATTACCACCATTATTCCCGAAGTCATACTCGTAC ] [+] EMBL CD179493 [ TAGAACGTGGTTCTGGAAGAGTATCACTTTCGTAAATTTTTATATATGCTTTGAAATAAGTAAAAAGTTCACGACACGTAACTTCCTGACCATTTATGTTTTTAACAACCAGATTAACTGGAGCTAACAAATGAGGGACTAAAGCGATAAGATTTTCAACGAAGCTAGGATCGATATCTTTTACTCGTCCATCAAATTTTGGATTTGTTGAAACTTTAAGACCGGGATGAGGCATTAGGAAACAATCCAACTTGGAAAAACAAGAGCGAATATGACGGCGGACAGCTTGGTGCTCTGTGTGATGCTGTTGAACAATCTTGAGGCGATTATCGAGCAGTTGATTACCACCATTATTCCCGAAGTCATACTCGTA ] [+] EMBL CD179555 [ TAGAACGTGGTTCTGGAAGAGTATCACTTTCGTAAATTTTTATATATGCTTTGAAATAAGTAAAAAGTTCACGACACGTAACTTCCTGACCATTTATGTTTTTAACAACCAGATTAACTGGAGCTAACAAATGAGGGACTAAAGCGATAAGATTTTCAACGAAGCTAGGATCGATATCTTTTACTCGTCCATCAAATTTTGGATTTGTTGAAACTTTAAGACCGGGATGAGGCATTAGGAAACAATCCAACTTGGAAAAACAAGAGCGAATATGACGGCGGACAGCTTGGTGCTCTGTGTGATGCTGTTGAACAATCTTGAGGCGATTATCGAGCAGTTGATTACCACCATTATTCCCGAAGTCATACTCGTA ] [+] EMBL CD179500 [ TAGAACGTGGTTCTGGAAGAGTATCACTTTCGTAAATTTTTATATATGCTTTGAAATAAGTAAAAAGTTCACGACACGTAACTTCCTGACCATTTATGTTTTTAACAACCAGATTAACTGGAGCTAACAAATGAGGGACTAAAGCGATAAGATTTTCAACGAAGCTAGGATCGATATCTTTTACTCGTCCATCAAATTTTGGATTTGTTGAAACTTTAAGACCGGGATGAGGCATTAGGAAACAATCCAACTTGGAAAAACAAGAGCGAATATGACGGCGGACAGCTTGGTGCTCTGTGTGATGCTGTTGAACAATCTTGAGGCGATTATCGAGCAGTTGATTACCACCATTATTCCCGAAGTCATACTCGTA ] [-] EMBL CD179554 [ AGAACGTGGTTCTGGAAGAGTATCACTTTCGTAAATTTTTATATATGCTTTGAAATAAGTAAAAAGTTCACGACACGTAACTTCCTGACCATTTATGTTTTTAACAACCAGATTAACTGGAGCTAACAAATGAGGGACTAAAGCGATAAGATTTTCAACGAAGCTAGGATCGATATCTTTTACTCGTCCATCAAATTTTGGATTTGTTGAAACTTTAAGACCGGGATGAGGCATTAGGAAACAATCCAACTTGGAAAAACAAGAGCGAATATGACGGCGGACAGCTTGGTGCTCTGTGTGATGCTGTTGAACAATCTTGAGGCGATTATCGAGCAGTTGATTACCACCATTATTCCCGAAGTCATACTCGTAC ] [-] EMBL CD179430 [ AGAACGTGGTTCTGGAAGAGTATCACTTTCGTAAATTTTTATATATGCTTTGAAATAAGTAAAAAGTTCACGACACGTAACTTCCTGACCATTTATGTTTTTAACAACCAGATTAACTGGAGCTAACAAATGAGGGACTAAAGCGATAAGATTTTCAACGAAGCTAGGATCGATATCTTTTACTCGTCCATCAAATTTTGGATTTGTTGAAACTTTAAGACCGGGATGAGGCATTAGGAAACAATCCAACTTGGAAAAACAAGAGCGAATATGACGGCGGACAGCTTGGTGCTCTGTGTGATGCTGTTGAACAATCTTGAGGCGATTATCGAGCAGTTGATTACCACCATTATTCCCGAAGTCATACTCGTAC ] [-] EMBL CD179551 [ AGAACGTGGTTCTGGAAGAGTATCACTTTCGTAAATTTTTATATATGCTTTGAAATAAGTAAAAAGTTCACGACACGTAACTTCCTGACCATTTATGTTTTTAACAACCAGATTAACTGGAGCTAACAAATGAGGGACTAAAGCGATAAGATTTTCAACGAAGCTAGGATCGATATCTTTTACTCGTCCATCAAATTTTGGATTTGTTGAAACTTTAAGACCGGGATGAGGCATTAGGAAACAATCCAACTTGGAAAAACAAGAGCGAATATGACGGCGGACAGCTTGGTGCTCTGTGTGATGCTGTTGAACAATCTTGAGGCGATTATCGAGCAGTTGATTACCACCATTATTCCCGAAGTCATACTCGTAC ] [+] EMBL CD114250 [ ATGCTGTTGAACAATCTTGAGGCGATTATCGAGCAGTTGATTACCACCATTATTCCCGAAGTCATACTCGTACGGGAAACTCCAATCACGAACAAGGAATAAAAGATGCTGGAAAGGTGTCCCTGAAATATCAGATTCTAAGGCGAGTCGACCATATTCAGTGAATAAATGCAAATGCTGCAGGTGATCTTCTTGAATATTACCATGAATGTTGTAAACTTGAGTACTACTAACCATTGTACTCAAAGCGAAAACCGTAGCACACTGACGCACAGCACTAGTACTATCAAAAGAACCCTGTGTATCCATTAACAGAACGACTACTTCCTCTCCAGATGGTAGAGTCATAAAGAATGGTTCGCTCCATAACAATATTCCAACAGTGTCTCTCTCCGAACCACCTCGCCAAGGAAAGCCCTTCAAAGGTGTTTCTGGGTCTCCTAGCCAGTTAGTACGGTCACTGGACAACAAATAACGTAGGAAAAAATCCAGTAAAAACGATTTTCCTTGACGAAACGCACCAGCAACTGAGACCACAACAACTTTTTTGTCACGCACATCCGGTCTTAAAAGAATTGAAGACAAAGACTCCTCATCTAGAGTGAATGATGTTTTCTTCATACATTCTTCAACATTTATAATTTGAACTGCATGTCCATCTGCGGC ] [+] EMBL CD126308 [ AATAAATGCAAATGCTGCAGGTGATCTTCTTGAATATTACCATGAATGTTGTAAACTTGAGTACTACTAACCATTGTACTCAAAGCGAAAACCGTAGCACACTGACGCACAGTACTAGTACTATCAAAAGAACCCTGTGTATCCATTAACAGAACGACTACTTCCTCTCCAGATGGTAGAGTCATAAAGAATGGTTCGCTCCATAACAATATTCCAACAGTGTCTCTCTCCGAACCACCTCGCCAAGGAAAGCCCTTCAAAGGTGTTTCTGGGTCTCCTAGCCAGTTAGTACGGTCACTGGACAACAAATAACGTAGGAAAAAATCCAGTAAAAACGATTTTCCTTGACGAAACGCACCAGCAACTGAGACCACAACAACTTTTTTGTCACGCACATCCGGTCTTAAAAGAATTGAAGACAAAGACTCCTCATCTAGAGTGAATGATGTTTTCTTCATACATTCTTCAACATTTATAATTTGAACTGCATGTCCATCTGCGGCAACCATCCTCTACCAGTAAGTAACGCACTAT] [-] EMBL AA819941 [ GATGGTAGAGTCATAAAGAATGGTTCGCTCCATAACAATATTCCAACAGTGTCTCTCTCCGAACCACCTCGCCAAGGAAAGCCCTTCAAAGGTGTTTCTGGGTCTCCTAGCCAGTTAGTACGGTCACTGGACAACAAATAACGTAGGANNAAATCCAGTAAAAACGATTTTCCTTGACGAAACGCACCAGCAACTGAGACCACAACAACTTTTTTGTCACGCACATCCGGTCTTAAAAGAATTGAANACAAAGACTCCTCATCTAGAGTGAATGATGTTTTCNTCATACATTCTTCAACATTTATAATTTGAACTGCATGT ] consensusID : consensus_10075#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence [GAATTGTGTTAAATTTCTGAACAGCAGCCTTATATATTTTTAAATGAGCTGAATCTAAATCAGTTGGATTGATGTACGGCCGATCAGGTCCACAAATCTACGATAGAGAAAAAACAATAAATTGTAATATACAGAATAGAATCTCAAGTAGATAATATGTATTTGTATTCTGATGTTCTACAACATCATTAGACATTTGTTTTCTGAGAATAGAGAATACTTAAACTCAGGTATTTTACTGTAATCTAACGCAATTGAATAACCGCAAGCAATGAAGTCATCGATACTGTAAAATTTACTATCAAGCAAGAGAGTATACTGCTTATTGTTTAGCTTTCTTGACTCAGTATATTTAATTTAAAATGTAGGAAGCTTATTGTTGATCTCTCCTACAATCGACCGAAAAGGGCTGTCAAGAGTGAGA] [+] EMBL CD093951 [GAATTGTGTTAAATTTCTGAACAGCAGCCTTATATATTTTTAAATGAGCTGAATCTAAATCAGTTGGATTGATGTACGGCCGATCAGGTCCACAAATCTACGATAGAGAAAAAACAATAAATTGTAATATACAGAATAGAATCTCAAGTAGATAATATGTATTTGTATTCTGATGTTCTACAACATCATTAGACATTTGTTTTCTGAGAATAGAGAATACTTAAACTCAGGTATTTTACTGTAATCTAACGCAATTGAATAACCGCAAGCAATGAAGTCATCGATACTGTAAAATTTACTATCAAGCAAGAGAGTATACTGCTTATTGTTTAGCTTTCTTGACTCAGTATATTTAATTTAAAATGTAGGAAGCTTATTGTTGATCTCTCCTACAATCGACCGAAAAGGGCTGTCAAGAGTGAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10075#0 TTTATTACCAACTCAGCTGACTGATCGATGGCACTAGCTAATTCTGGGGCTCGACCAGTG 60 consensus_10075#1 ------------------------------------------------------------ consensus_10075#0 TAACTTAAAAACAACCACGTGAACAATGATACTAAAGCAATATAAAATGGTAGGGCCAAT 120 consensus_10075#1 ------------------------------------------------------------ consensus_10075#0 ATACCCGAAACCATTGATAAACCAATAAATTCTGATATTCCTGTAACAATATGGAAAATT 180 consensus_10075#1 ------------------------------------------------------------ consensus_10075#0 AGTAGAACAACAGCCAAAACAGCAGGAGTACGAAATGTCTGGAATATATCCTTCTTAGAG 240 consensus_10075#1 ------------------------------------------------------------ consensus_10075#0 TTTGACATCCGATAATCTTCTCCCAGTTGTTTTAATGTTTCTTTTAAGCGCTCCAAATAA 300 consensus_10075#1 ------------------------------------------------------------ consensus_10075#0 CCTGCAGAGAAAGCCTCACCGCCCATTTTAGGAATTGTGTTAAATTTCTGAACAGCAGCC 360 consensus_10075#1 -------------------------------GAATTGTGTTAAATTTCTGAACAGCAGCC 29 ***************************** consensus_10075#0 TTATATATTTTTAAATGAGCTGAATCTAAATCAGTTGGATTGATGTACGGCCGATCAGGT 420 consensus_10075#1 TTATATATTTTTAAATGAGCTGAATCTAAATCAGTTGGATTGATGTACGGCCGATCAGGT 89 ************************************************************ consensus_10075#0 CCACAAATCTTGTTCATAGCCTCCGAATACATCTCTTGACATGTTAATAT-CGCATTAAG 479 consensus_10075#1 CCACAAATCTACGATAGAGA----AAAAACAAT-----AAATTGTAATATACAGAATAGA 140 ********** * ** ** *** * ** ****** * * ** consensus_10075#0 GTTGTTTGCCTCGGCAGTTGCTTCCAACATAGAACGTGGTTCTGGAAGAGTATCACTTTC 539 consensus_10075#1 AT------CTCAAGTAGAT------AATATGTATTTGTATTCTGATGTTCTACAACATCA 188 * * * ** * ** ** * ***** ** ** * consensus_10075#0 GTAAATTTTTATATATGCTTTGAAATAAGTAAAAAGTTCACGACACGTAACTTCCTGACC 599 consensus_10075#1 TTAGACATTTGTTT----TCTGAGAATAGAGAATACTTAAACTCAGGTATTTTACTGTAA 244 ** * *** * * * *** * ** ** * ** * ** *** ** *** consensus_10075#0 ATTTATGTTTTTAACAACCAGATTAACTGGAGCTAACAAATGAGGGACTAAAGCGATAAG 659 consensus_10075#1 TCTAACGCAATT--------GAATAACCG---CAAGCAATGAAGTCATCGATACTGTAAA 293 * * * ** ** **** * * * *** ** * * * *** consensus_10075#0 ATTTTCAACGAAGCTAGGATCGATATCTTTTACTCGTCCATCAAATTTTGGATTTGTTGA 719 consensus_10075#1 ATTTACTATCAAGCAAGAGAGTATACTGCTTATT-GTTTAGCT--TTCTTGACTCAGTAT 350 **** * * **** ** *** *** * ** * * ** * ** * * consensus_10075#0 A---ACTTTAAGACCGGGATGAGGCATTAGGAAACAATCCAACT-TGGAAAAACAAGAGC 775 consensus_10075#1 ATTTAATTTAAAATGTAGGAAGCTTATTGTTGATCTCTCCTACAATCGACCGAAAAGGGC 410 * * ***** * * *** * * *** ** * ** * *** ** consensus_10075#0 GAATATGACGGCGGACAGCTTGGTGCTCTGTGTGATGCTGTTGAACAATCTTGAGGCGAT 835 consensus_10075#1 TGTCAAGAGTGAGA---------------------------------------------- 424 * ** * * consensus_10075#0 TATCGAGCAGTTGATTACCACCATTATTCCCGAAGTCATACTCGTACGGGAAACTCCAAT 895 consensus_10075#1 ------------------------------------------------------------ consensus_10075#0 CACGAACAAGGAATAAAAGATGCTGGAAAGGTGTCCCTGAAATATCAGATTCTAAGGCGA 955 consensus_10075#1 ------------------------------------------------------------ consensus_10075#0 GTCGACCATATTCAGTGAATAAATGCAAATGCTGCAGGTGATCTTCTTGAATATTACCAT 1015 consensus_10075#1 ------------------------------------------------------------ consensus_10075#0 GAATGTTGTAAACTTGAGTACTACTAACCATTGTACTCAAAGCGAAAACCGTAGCACACT 1075 consensus_10075#1 ------------------------------------------------------------ consensus_10075#0 GACGCACAGCACTAGTACTATCAAAAGAACCCTGTGTATCCATTAACAGAACGACTACTT 1135 consensus_10075#1 ------------------------------------------------------------ consensus_10075#0 CCTCTCCAGATGGTAGAGTCATAAAGAATGGTTCGCTCCATAACAATATTCCAACAGTGT 1195 consensus_10075#1 ------------------------------------------------------------ consensus_10075#0 CTCTCTCCGAACCACCTCGCCAAGGAAAGCCCTTCAAAGGTGTTTCTGGGTCTCCTAGCC 1255 consensus_10075#1 ------------------------------------------------------------ consensus_10075#0 AGTTAGTACGGTCACTGGACAACAAATAACGTAGGAAAAAATCCAGTAAAAACGATTTTC 1315 consensus_10075#1 ------------------------------------------------------------ consensus_10075#0 CTTGACGAAACGCACCAGCAACTGAGACCACAACAACTTTTTTGTCACGCACATCCGGTC 1375 consensus_10075#1 ------------------------------------------------------------ consensus_10075#0 TTAAAAGAATTGAAGACAAAGACTCCTCATCTAGAGTGAATGATGTTTTCTTCATACATT 1435 consensus_10075#1 ------------------------------------------------------------ consensus_10075#0 CTTCAACATTTATAATTTGAACTGCATGTCCATCTGCGGCAACCATCCTCTACCAGTAAG 1495 consensus_10075#1 ------------------------------------------------------------ consensus_10075#0 TAACGCACTAT 1506 consensus_10075#1 ----------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||