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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10075#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1506 fasta sequence
[TTTATTACCAACTCAGCTGACTGATCGATGGCACTAGCTAATTCTGGGGCTCGACCAGTGTAACTTAAAAACAACCACGTGAACAATGATACTAAAGCAATATAAAATGGTAGGGCCAATATACCCGAAACCATTGATAAACCAATAAATTCTGATATTCCTGTAACAATATGGAAAATTAGTAGAACAACAGCCAAAACAGCAGGAGTACGAAATGTCTGGAATATATCCTTCTTAGAGTTTGACATCCGATAATCTTCTCCCAGTTGTTTTAATGTTTCTTTTAAGCGCTCCAAATAACCTGCAGAGAAAGCCTCACCGCCCATTTTAGGAATTGTGTTAAATTTCTGAACAGCAGCCTTATATATTTTTAAATGAGCTGAATCTAAATCAGTTGGATTGATGTACGGCCGATCAGGTCCACAAATCTTGTTCATAGCCTCCGAATACATCTCTTGACATGTTAATATCGCATTAAGGTTGTTTGCCTCGGCAGTTGCTTCCAACATAGAACGTGGTTCTGGAAGAGTATCACTTTCGTAAATTTTTATATATGCTTTGAAATAAGTAAAAAGTTCACGACACGTAACTTCCTGACCATTTATGTTTTTAACAACCAGATTAACTGGAGCTAACAAATGAGGGACTAAAGCGATAAGATTTTCAACGAAGCTAGGATCGATATCTTTTACTCGTCCATCAAATTTTGGATTTGTTGAAACTTTAAGACCGGGATGAGGCATTAGGAAACAATCCAACTTGGAAAAACAAGAGCGAATATGACGGCGGACAGCTTGGTGCTCTGTGTGATGCTGTTGAACAATCTTGAGGCGATTATCGAGCAGTTGATTACCACCATTATTCCCGAAGTCATACTCGTACGGGAAACTCCAATCACGAACAAGGAATAAAAGATGCTGGAAAGGTGTCCCTGAAATATCAGATTCTAAGGCGAGTCGACCATATTCAGTGAATAAATGCAAATGCTGCAGGTGATCTTCTTGAATATTACCATGAATGTTGTAAACTTGAGTACTACTAACCATTGTACTCAAAGCGAAAACCGTAGCACACTGACGCACAGCACTAGTACTATCAAAAGAACCCTGTGTATCCATTAACAGAACGACTACTTCCTCTCCAGATGGTAGAGTCATAAAGAATGGTTCGCTCCATAACAATATTCCAACAGTGTCTCTCTCCGAACCACCTCGCCAAGGAAAGCCCTTCAAAGGTGTTTCTGGGTCTCCTAGCCAGTTAGTACGGTCACTGGACAACAAATAACGTAGGAAAAAATCCAGTAAAAACGATTTTCCTTGACGAAACGCACCAGCAACTGAGACCACAACAACTTTTTTGTCACGCACATCCGGTCTTAAAAGAATTGAAGACAAAGACTCCTCATCTAGAGTGAATGATGTTTTCTTCATACATTCTTCAACATTTATAATTTGAACTGCATGTCCATCTGCGGCAACCATCCTCTACCAGTAAGTAACGCACTAT]
[+] EMBL CD160959 [TTTATTACCAACTCAGCTGACTGATCGATGGCACTAGCTAATTCTGGGGCTCGACCAGTGTAACTTAAAAACAACCACGTGAACAATGATACTAAAGCAATATAAAATGGTAGGGCCAATATACCCGAAACCATTGATAAACCAATAAATTCTGATATTCCTGTAACAATATGGAAAATTAGTAGAACAACAGCCAAAACAGCAGGAGTACGAAATGTCTGGAATATATCCTTCTTAGAGTTTGACATCCGATAATCTTCTCCCAGTTGTTTTAATGTTTCTTTTAAGCGCTCCAAATAACCTGCAGAGAAAGCCTCACCGCCCATTTTAGGAATTGTGTTAAATTTCTGAACAGCAGCCTTATATATTTTTAAATGAGCTGAATCTAAATCAGTTGGATTGATGTACGGCCGATCAGGTCCACAAATCTTGTTCATAGCCTCCGAATACATCTCTTGACATGTTAATATCGCATTAAGGTTGTTTGCCTCGGCAGTTGCTTCCAACATAGAACGTGGTTCTGGAAGAGTATCACTTTCGTAAATTTTTATATATGCTTTGAAATAAGTAAAAAGTTCACGACACGTAACTTCCTGACCATTTATGTNTTTAACAACCAGATTAACTGGAG ]
[-] EMBL CD111822 [ tTGTACCAATATGGAAAATTAGTAGAACAACAGCCAAAACAGCAGGAGTACGAAATGTCTGGAATATATCCTTCTTAGAGTTT CATCCGATAATCTTCTCCCAGTTGTTTTAATGTTTCTTTTAAGCGCTCCAAATAACCTGCAGAGAAAGCCTCACCGCCCATTTTAGGAATTGTGTTAAATTTCTGAACAGCAGCCTTATATATTTTTAAATGAGCTGAATCTAAATCAGTTGGATTGATGTACGGCCGATCAGGTCCACAAATCTTGTTCATAGCCTCCGAATACATCTCTTGACATGTTAATATCGCATTAAGG ]
[-] EMBL CD179533 [ CAGTTGCTTCCAACATAGAACGTGGTTCTGGAAGAGTATCACTTTCGTAAATTTTTATATATGCTTTGAAATAAGTAAAAAGTTCACGACACGTAACTTCCTGACCATTTATGTTTTTAACAACCAGATTAACTGGAGCTAACAAATGAGGGACTAAAGCGATAAGATTTTCAACGAAGCTAGGATCGATATCTTTTACTCGTCCATCAAATTTTGGATTTGTTGAAACTTTAAGACCGGGATGAGGCATTAGGAAACAATCCAACTTGGAAAAACAAGAGCGAATATGACGGCGGACAGCTTGGTGCTCTGTGTGATGCTGTTGAACAATCTTGAGGCGATTATCGAGCAGTTGATTACCACCATTATTCCCGAAGTCATACTCGTAC ]
[+] EMBL CD179493 [ TAGAACGTGGTTCTGGAAGAGTATCACTTTCGTAAATTTTTATATATGCTTTGAAATAAGTAAAAAGTTCACGACACGTAACTTCCTGACCATTTATGTTTTTAACAACCAGATTAACTGGAGCTAACAAATGAGGGACTAAAGCGATAAGATTTTCAACGAAGCTAGGATCGATATCTTTTACTCGTCCATCAAATTTTGGATTTGTTGAAACTTTAAGACCGGGATGAGGCATTAGGAAACAATCCAACTTGGAAAAACAAGAGCGAATATGACGGCGGACAGCTTGGTGCTCTGTGTGATGCTGTTGAACAATCTTGAGGCGATTATCGAGCAGTTGATTACCACCATTATTCCCGAAGTCATACTCGTA ]
[+] EMBL CD179555 [ TAGAACGTGGTTCTGGAAGAGTATCACTTTCGTAAATTTTTATATATGCTTTGAAATAAGTAAAAAGTTCACGACACGTAACTTCCTGACCATTTATGTTTTTAACAACCAGATTAACTGGAGCTAACAAATGAGGGACTAAAGCGATAAGATTTTCAACGAAGCTAGGATCGATATCTTTTACTCGTCCATCAAATTTTGGATTTGTTGAAACTTTAAGACCGGGATGAGGCATTAGGAAACAATCCAACTTGGAAAAACAAGAGCGAATATGACGGCGGACAGCTTGGTGCTCTGTGTGATGCTGTTGAACAATCTTGAGGCGATTATCGAGCAGTTGATTACCACCATTATTCCCGAAGTCATACTCGTA ]
[+] EMBL CD179500 [ TAGAACGTGGTTCTGGAAGAGTATCACTTTCGTAAATTTTTATATATGCTTTGAAATAAGTAAAAAGTTCACGACACGTAACTTCCTGACCATTTATGTTTTTAACAACCAGATTAACTGGAGCTAACAAATGAGGGACTAAAGCGATAAGATTTTCAACGAAGCTAGGATCGATATCTTTTACTCGTCCATCAAATTTTGGATTTGTTGAAACTTTAAGACCGGGATGAGGCATTAGGAAACAATCCAACTTGGAAAAACAAGAGCGAATATGACGGCGGACAGCTTGGTGCTCTGTGTGATGCTGTTGAACAATCTTGAGGCGATTATCGAGCAGTTGATTACCACCATTATTCCCGAAGTCATACTCGTA ]
[-] EMBL CD179554 [ AGAACGTGGTTCTGGAAGAGTATCACTTTCGTAAATTTTTATATATGCTTTGAAATAAGTAAAAAGTTCACGACACGTAACTTCCTGACCATTTATGTTTTTAACAACCAGATTAACTGGAGCTAACAAATGAGGGACTAAAGCGATAAGATTTTCAACGAAGCTAGGATCGATATCTTTTACTCGTCCATCAAATTTTGGATTTGTTGAAACTTTAAGACCGGGATGAGGCATTAGGAAACAATCCAACTTGGAAAAACAAGAGCGAATATGACGGCGGACAGCTTGGTGCTCTGTGTGATGCTGTTGAACAATCTTGAGGCGATTATCGAGCAGTTGATTACCACCATTATTCCCGAAGTCATACTCGTAC ]
[-] EMBL CD179430 [ AGAACGTGGTTCTGGAAGAGTATCACTTTCGTAAATTTTTATATATGCTTTGAAATAAGTAAAAAGTTCACGACACGTAACTTCCTGACCATTTATGTTTTTAACAACCAGATTAACTGGAGCTAACAAATGAGGGACTAAAGCGATAAGATTTTCAACGAAGCTAGGATCGATATCTTTTACTCGTCCATCAAATTTTGGATTTGTTGAAACTTTAAGACCGGGATGAGGCATTAGGAAACAATCCAACTTGGAAAAACAAGAGCGAATATGACGGCGGACAGCTTGGTGCTCTGTGTGATGCTGTTGAACAATCTTGAGGCGATTATCGAGCAGTTGATTACCACCATTATTCCCGAAGTCATACTCGTAC ]
[-] EMBL CD179551 [ AGAACGTGGTTCTGGAAGAGTATCACTTTCGTAAATTTTTATATATGCTTTGAAATAAGTAAAAAGTTCACGACACGTAACTTCCTGACCATTTATGTTTTTAACAACCAGATTAACTGGAGCTAACAAATGAGGGACTAAAGCGATAAGATTTTCAACGAAGCTAGGATCGATATCTTTTACTCGTCCATCAAATTTTGGATTTGTTGAAACTTTAAGACCGGGATGAGGCATTAGGAAACAATCCAACTTGGAAAAACAAGAGCGAATATGACGGCGGACAGCTTGGTGCTCTGTGTGATGCTGTTGAACAATCTTGAGGCGATTATCGAGCAGTTGATTACCACCATTATTCCCGAAGTCATACTCGTAC ]
[+] EMBL CD114250 [ ATGCTGTTGAACAATCTTGAGGCGATTATCGAGCAGTTGATTACCACCATTATTCCCGAAGTCATACTCGTACGGGAAACTCCAATCACGAACAAGGAATAAAAGATGCTGGAAAGGTGTCCCTGAAATATCAGATTCTAAGGCGAGTCGACCATATTCAGTGAATAAATGCAAATGCTGCAGGTGATCTTCTTGAATATTACCATGAATGTTGTAAACTTGAGTACTACTAACCATTGTACTCAAAGCGAAAACCGTAGCACACTGACGCACAGCACTAGTACTATCAAAAGAACCCTGTGTATCCATTAACAGAACGACTACTTCCTCTCCAGATGGTAGAGTCATAAAGAATGGTTCGCTCCATAACAATATTCCAACAGTGTCTCTCTCCGAACCACCTCGCCAAGGAAAGCCCTTCAAAGGTGTTTCTGGGTCTCCTAGCCAGTTAGTACGGTCACTGGACAACAAATAACGTAGGAAAAAATCCAGTAAAAACGATTTTCCTTGACGAAACGCACCAGCAACTGAGACCACAACAACTTTTTTGTCACGCACATCCGGTCTTAAAAGAATTGAAGACAAAGACTCCTCATCTAGAGTGAATGATGTTTTCTTCATACATTCTTCAACATTTATAATTTGAACTGCATGTCCATCTGCGGC ]
[+] EMBL CD126308 [ AATAAATGCAAATGCTGCAGGTGATCTTCTTGAATATTACCATGAATGTTGTAAACTTGAGTACTACTAACCATTGTACTCAAAGCGAAAACCGTAGCACACTGACGCACAGTACTAGTACTATCAAAAGAACCCTGTGTATCCATTAACAGAACGACTACTTCCTCTCCAGATGGTAGAGTCATAAAGAATGGTTCGCTCCATAACAATATTCCAACAGTGTCTCTCTCCGAACCACCTCGCCAAGGAAAGCCCTTCAAAGGTGTTTCTGGGTCTCCTAGCCAGTTAGTACGGTCACTGGACAACAAATAACGTAGGAAAAAATCCAGTAAAAACGATTTTCCTTGACGAAACGCACCAGCAACTGAGACCACAACAACTTTTTTGTCACGCACATCCGGTCTTAAAAGAATTGAAGACAAAGACTCCTCATCTAGAGTGAATGATGTTTTCTTCATACATTCTTCAACATTTATAATTTGAACTGCATGTCCATCTGCGGCAACCATCCTCTACCAGTAAGTAACGCACTAT]
[-] EMBL AA819941 [ GATGGTAGAGTCATAAAGAATGGTTCGCTCCATAACAATATTCCAACAGTGTCTCTCTCCGAACCACCTCGCCAAGGAAAGCCCTTCAAAGGTGTTTCTGGGTCTCCTAGCCAGTTAGTACGGTCACTGGACAACAAATAACGTAGGANNAAATCCAGTAAAAACGATTTTCCTTGACGAAACGCACCAGCAACTGAGACCACAACAACTTTTTTGTCACGCACATCCGGTCTTAAAAGAATTGAANACAAAGACTCCTCATCTAGAGTGAATGATGTTTTCNTCATACATTCTTCAACATTTATAATTTGAACTGCATGT ]
consensusID : consensus_10075#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence
[GAATTGTGTTAAATTTCTGAACAGCAGCCTTATATATTTTTAAATGAGCTGAATCTAAATCAGTTGGATTGATGTACGGCCGATCAGGTCCACAAATCTACGATAGAGAAAAAACAATAAATTGTAATATACAGAATAGAATCTCAAGTAGATAATATGTATTTGTATTCTGATGTTCTACAACATCATTAGACATTTGTTTTCTGAGAATAGAGAATACTTAAACTCAGGTATTTTACTGTAATCTAACGCAATTGAATAACCGCAAGCAATGAAGTCATCGATACTGTAAAATTTACTATCAAGCAAGAGAGTATACTGCTTATTGTTTAGCTTTCTTGACTCAGTATATTTAATTTAAAATGTAGGAAGCTTATTGTTGATCTCTCCTACAATCGACCGAAAAGGGCTGTCAAGAGTGAGA]
[+] EMBL CD093951 [GAATTGTGTTAAATTTCTGAACAGCAGCCTTATATATTTTTAAATGAGCTGAATCTAAATCAGTTGGATTGATGTACGGCCGATCAGGTCCACAAATCTACGATAGAGAAAAAACAATAAATTGTAATATACAGAATAGAATCTCAAGTAGATAATATGTATTTGTATTCTGATGTTCTACAACATCATTAGACATTTGTTTTCTGAGAATAGAGAATACTTAAACTCAGGTATTTTACTGTAATCTAACGCAATTGAATAACCGCAAGCAATGAAGTCATCGATACTGTAAAATTTACTATCAAGCAAGAGAGTATACTGCTTATTGTTTAGCTTTCTTGACTCAGTATATTTAATTTAAAATGTAGGAAGCTTATTGTTGATCTCTCCTACAATCGACCGAAAAGGGCTGTCAAGAGTGAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10075#0 TTTATTACCAACTCAGCTGACTGATCGATGGCACTAGCTAATTCTGGGGCTCGACCAGTG 60
consensus_10075#1 ------------------------------------------------------------
consensus_10075#0 TAACTTAAAAACAACCACGTGAACAATGATACTAAAGCAATATAAAATGGTAGGGCCAAT 120
consensus_10075#1 ------------------------------------------------------------
consensus_10075#0 ATACCCGAAACCATTGATAAACCAATAAATTCTGATATTCCTGTAACAATATGGAAAATT 180
consensus_10075#1 ------------------------------------------------------------
consensus_10075#0 AGTAGAACAACAGCCAAAACAGCAGGAGTACGAAATGTCTGGAATATATCCTTCTTAGAG 240
consensus_10075#1 ------------------------------------------------------------
consensus_10075#0 TTTGACATCCGATAATCTTCTCCCAGTTGTTTTAATGTTTCTTTTAAGCGCTCCAAATAA 300
consensus_10075#1 ------------------------------------------------------------
consensus_10075#0 CCTGCAGAGAAAGCCTCACCGCCCATTTTAGGAATTGTGTTAAATTTCTGAACAGCAGCC 360
consensus_10075#1 -------------------------------GAATTGTGTTAAATTTCTGAACAGCAGCC 29
*****************************
consensus_10075#0 TTATATATTTTTAAATGAGCTGAATCTAAATCAGTTGGATTGATGTACGGCCGATCAGGT 420
consensus_10075#1 TTATATATTTTTAAATGAGCTGAATCTAAATCAGTTGGATTGATGTACGGCCGATCAGGT 89
************************************************************
consensus_10075#0 CCACAAATCTTGTTCATAGCCTCCGAATACATCTCTTGACATGTTAATAT-CGCATTAAG 479
consensus_10075#1 CCACAAATCTACGATAGAGA----AAAAACAAT-----AAATTGTAATATACAGAATAGA 140
********** * ** ** *** * ** ****** * * **
consensus_10075#0 GTTGTTTGCCTCGGCAGTTGCTTCCAACATAGAACGTGGTTCTGGAAGAGTATCACTTTC 539
consensus_10075#1 AT------CTCAAGTAGAT------AATATGTATTTGTATTCTGATGTTCTACAACATCA 188
* * * ** * ** ** * ***** ** ** *
consensus_10075#0 GTAAATTTTTATATATGCTTTGAAATAAGTAAAAAGTTCACGACACGTAACTTCCTGACC 599
consensus_10075#1 TTAGACATTTGTTT----TCTGAGAATAGAGAATACTTAAACTCAGGTATTTTACTGTAA 244
** * *** * * * *** * ** ** * ** * ** *** ** ***
consensus_10075#0 ATTTATGTTTTTAACAACCAGATTAACTGGAGCTAACAAATGAGGGACTAAAGCGATAAG 659
consensus_10075#1 TCTAACGCAATT--------GAATAACCG---CAAGCAATGAAGTCATCGATACTGTAAA 293
* * * ** ** **** * * * *** ** * * * ***
consensus_10075#0 ATTTTCAACGAAGCTAGGATCGATATCTTTTACTCGTCCATCAAATTTTGGATTTGTTGA 719
consensus_10075#1 ATTTACTATCAAGCAAGAGAGTATACTGCTTATT-GTTTAGCT--TTCTTGACTCAGTAT 350
**** * * **** ** *** *** * ** * * ** * ** * *
consensus_10075#0 A---ACTTTAAGACCGGGATGAGGCATTAGGAAACAATCCAACT-TGGAAAAACAAGAGC 775
consensus_10075#1 ATTTAATTTAAAATGTAGGAAGCTTATTGTTGATCTCTCCTACAATCGACCGAAAAGGGC 410
* * ***** * * *** * * *** ** * ** * *** **
consensus_10075#0 GAATATGACGGCGGACAGCTTGGTGCTCTGTGTGATGCTGTTGAACAATCTTGAGGCGAT 835
consensus_10075#1 TGTCAAGAGTGAGA---------------------------------------------- 424
* ** * *
consensus_10075#0 TATCGAGCAGTTGATTACCACCATTATTCCCGAAGTCATACTCGTACGGGAAACTCCAAT 895
consensus_10075#1 ------------------------------------------------------------
consensus_10075#0 CACGAACAAGGAATAAAAGATGCTGGAAAGGTGTCCCTGAAATATCAGATTCTAAGGCGA 955
consensus_10075#1 ------------------------------------------------------------
consensus_10075#0 GTCGACCATATTCAGTGAATAAATGCAAATGCTGCAGGTGATCTTCTTGAATATTACCAT 1015
consensus_10075#1 ------------------------------------------------------------
consensus_10075#0 GAATGTTGTAAACTTGAGTACTACTAACCATTGTACTCAAAGCGAAAACCGTAGCACACT 1075
consensus_10075#1 ------------------------------------------------------------
consensus_10075#0 GACGCACAGCACTAGTACTATCAAAAGAACCCTGTGTATCCATTAACAGAACGACTACTT 1135
consensus_10075#1 ------------------------------------------------------------
consensus_10075#0 CCTCTCCAGATGGTAGAGTCATAAAGAATGGTTCGCTCCATAACAATATTCCAACAGTGT 1195
consensus_10075#1 ------------------------------------------------------------
consensus_10075#0 CTCTCTCCGAACCACCTCGCCAAGGAAAGCCCTTCAAAGGTGTTTCTGGGTCTCCTAGCC 1255
consensus_10075#1 ------------------------------------------------------------
consensus_10075#0 AGTTAGTACGGTCACTGGACAACAAATAACGTAGGAAAAAATCCAGTAAAAACGATTTTC 1315
consensus_10075#1 ------------------------------------------------------------
consensus_10075#0 CTTGACGAAACGCACCAGCAACTGAGACCACAACAACTTTTTTGTCACGCACATCCGGTC 1375
consensus_10075#1 ------------------------------------------------------------
consensus_10075#0 TTAAAAGAATTGAAGACAAAGACTCCTCATCTAGAGTGAATGATGTTTTCTTCATACATT 1435
consensus_10075#1 ------------------------------------------------------------
consensus_10075#0 CTTCAACATTTATAATTTGAACTGCATGTCCATCTGCGGCAACCATCCTCTACCAGTAAG 1495
consensus_10075#1 ------------------------------------------------------------
consensus_10075#0 TAACGCACTAT 1506
consensus_10075#1 -----------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||