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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10077#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1168 fasta sequence
[ATTGGTCTAAGCATTTCCGGACGAAATAGTCCCGAATTACCTATTTCCACCCACTTCTTGAGACCAGGATGATAACTAAAAATTTCCATACTCGGTTCAGTATATGGATTATACGCTGGTTTGAATCTCAGTTGCGTAAGTCCCAACTTTGAAAAGAAAGTTCGAATTACACTTTTTAAATGGCCTAAGCTAAGACCAAAGTCAGCAACTAGACCTTCAACTTGATGGAATTCTGCCAAATGAGTGGCGCCCAGATTTTCATTTCGAAACACACGATCAATACTGTAATATTTAGCTGGAGTAAATGGATTCTTTTTAGATAATGCATGGAGCATACGGGCGCTCACTGCTGTTGTATGTGTACGCAACAAATTTTTCTCCGCTTCCTCCATTAGCCATGGTGACTGATAGCCTCGACTACCAAAAGCACCTTGACTATGCACAGTACGAACTTTATCAATGTAACAAGTTTCGACTGTTTTGTTAATATCTGAAATCTCAGGATCTGAAAGGAAAAATGTATCATGTGCATCTCGAGCAGGATGTTGTTGTGGTTGAAAAAGACTATCGAAATTCCAAAAACTGCATTCAACATAATTGTTCGTAGGCATTTCTGAAAACCCCATATCACAAAGTATCCTACAGAATTCTGATCGTACACGCAGAAGAGGATGAAGATGTCCAGATGGTAAAGCGGCACCAAGAGAGTAAAAGTTATAAGCCTTAAATTTAGCTGTTTGCCATTCTCCACTGGAAAGCAACTCAGATGATAAATCCGTTTCTTCAGATTTTATATTTGTTGAAAATGATGGACCTTTTCGTACCAAGTAGGATGTGTGCTTTAATTCGGTAACCAGTTTTCGTTTTTTCAATTGAGACTTTTCGTTATCTGGTAAGGGACGTCTAGACTCTTTTACATCTGACAACAACTGTTGCACATCATCTTTGACTTCTGGGACCAAACGATGCAAACAAGGTACACCAGCCTCATTTTTGGTGAGTGCTATCCACTTTGACGAAAGGGCTTTGC-TAATACCTATTTTAGCACCTGGAAATATTTTCAAAATATCACTTTGTGGTATCCCTGATTCTGGGATAGCACGGTATACTCTGTATTCATGGCTGCCACTGTTTAAAATCTCATCACCTTCTTCTGTTAACTGTAAAA]
[+] EMBL CD161510 [ATTGGTCTAAGCATTTCCGGACGAAATAGTCCCGAATTACCTATTTCCACCCACTTCTTGAGACCAGGATGATAACTAAAAATTTCCATACTCGGTTCAGTATATGGATTATACGCTGGTTTGAATCTCAGTTGCGTAAGTCCCAACTTTGAAAAGAAAGTTCGAATTACACTTTTTAAATGGCCTAAGCTAAGACCAAAGTCAGCAACTAGACCTTCAACTTGATGGAATTCTGCCAAATGAGTGGCGCCCAGATTTTCATTTCGAAACACACGATCAATACTGTAATATTTAGCTGGAGTAAATGGATTCTTTTTAGATAATGCATGGAGCATACGGGCGCTCACTGCTGTTGTATGTGTACGCAACAAATTTTTCTCCGCTTCCTCCATTAGCCATGGTGACTGATAGCCTCGACTACCAAAAGCACCTTGACTATGCACAGTACGAACTTTATCAATGTAACAAGTTTCGACTGTTTTGTTAATATCTGAAATCTCAGGATCTGAAAGGAAAAATGTATCATGTGCATCTCGAGCAGGATGTTGTTGTGGTTGAAAAAGACTATCGAAATTCCAAAAACTGCATTCAACATAATTGTTCGTAGGCATTTCTG AAACCCCA ]
[-] EMBL CD153147 [ TTGCTGTGG TGAAAAGGACTATCGAAATTCCAAAAACTGCATTCAACATAATTGTTCGTAGGCATTTCTGAAAACCCCATATCACAAAGTATCCTACGGAATTCTGATCGTACACGCAGAAGAGGATGAAGATGTCCAGATGGTAAAGCGGCACCAAGAGAGTAAAAGTTATAAGCCTTAAATTTAGCTGTTTGCCATTCTCCACTGGAAAGCAACTCAGATGATAAATCCGTTTCTTCAGATTTCATATTTGTTGAAAATGATGGACCTTTTCGTACCAAGTAGGATGTGTGCTTTAATTCGGTAACCAGTTTTCGTTTTTTCAATTGAGACTTTTCGTTATCTGGTAAGGGACGTCTAGACTCTTTTACATCTGACAACAACTGTTGCACATCATCTTTGACTTCTGGGACCAAACGATGCAAACAAGGTACACCAGCCTCATTTTTGGTGAGTGCTATCCACTTTGACGAAAGGGCTTTGC TAATACCTATTTTAGCACCTGGAAATATTTTCAAAATATCACTTTGTGGTATCCCTGATTCTGGGATAGCACGGTATACTCTGTATTCATGGCTGCCACTGTTTAAAATCTCATCACCTTCTTCTGTTAACTGTA ]
[-] EMBL CD148671 [ AGACTATCGAAATTCCAAAAACTGCATTCAACATAATTGTTCGTAGGCATTTCTGAAAACCCCATATCACAAAGTATCCTACAGAATTCTGATCGTACACGCAGAAGAGAATGAAGATGTACAGATGGTAAAGCGGCACCAAGAGAGTAAAAGTTATAAGCCTTAAATTTAGCTGTTTGCCATTCTCCACTGGAAAGCAACTCAGATGATAAATCCGTTTCTTCAGATTTTATATTTGTTGAAAATGATGGACCTTTTCGTACCAAGTAGGATGCGTGCTTTAATTCGGTAACCAGTTTTCGTTTTTTCAATTGAGACTTTTCGTTATCTGGTAAGGGACGTCTAGACTCTTTTACATCTGACAACAACTGTTGCACATCATCTTTGACTTCTGGGACCAAACGATGCAAACAAGGTACACCAGCCTCATTTTTGGTGAGTGCTATCCACTTTGACGAAAGGGCTTTGC TAATACCTATTTTAGCACCTGGAAATATTTTCAAAATATCACTTTGTGGTATCCCTGATTCTGGGATAGCACGGTATACTCTGTATTCATGGCTGCCACTGTTTAAAATCTCATCACCTTCTTCTGTTAACTGTAAAA]
[-] EMBL CD153065 [ AAACTGCATTCAACATAATTGTTCGTAGGCATTTCTGAAAACCCCATATCACAAAGTATCCTACAGAATTCTGATCGTACACGCAGAAGAGGATGAGGATGTCCAGATGGTAAAGCGGCACCAAGAGAGTAAAAGTTATAAGCCTTAAATTTAGCTGTTTGCCATTCTCCACTGGAAAGCAACTCAAATGATAAATCCGTTTCTTCAGATTTTATATTTGTTGAAAATGATGGACCTTTTCGTACCAAGTAGGATGTGTGCTTTAATTCGGTAACCAGTTTTCGTTTTTTCAATTGAGACTTTTCGTTATCTGGTAAGGGACGTCTAGACTCTTTTACATCTGACAACAACTGTTGCACATCATCTTTGACTTCTGGGACCAAACGATGCAAACAAGGTACACCAGCCTCATTTTTGGTGAGTGCTATCCACTTTGACGAAAGGGCTTTGC TAATACCTATTTTAGCACCTGGAAATATTTTCAAAATATCACTTTGTGGTATCCCTGATTCTGGGATAGCACGGTATACTCTGTATTCATGGCTGCCACTGTTTAAAATCTCGTCACCTTCTTCTGTTAACTGTA ]
[+] EMBL CD195971 [ TCAACATAATTGTTCGTAGGCATTTCTGAAAACCCCATATCACAAAGTATCCTACAGAATTCTGATCGTACACGCAGAAGAGGATGAAGATGTCCAGATGGTAAAGCGGCACCAAGAGAGTAAAAGTTATAAGCCTTAAATTTAGCTGTTTGCCATTCTCCACTGGAAAGCAACTCAGATGATAAATCCGTTTCTTCAGATTTTATATTTGTTGAAAATGATGGACCTTTTCGTACCAAGTAGGATGTGTGCTTTAATTCGGTAACCAGTTTTCGTTTTTTCAATTGAGACTTTTCGTTATCTGGTAAGGGACGTCTAGACTCTTTTACATCTGA ]
[+] EMBL CD196031 [ TCAACATAATTGTTCGTAGGCATTTCTGAAAACCCCATATCACAAAGTATCCTACAGAATTCTGATCGTACACGCAGAAGAGGATGAAGATGTCCAGATGGTAAAGCGGCACCAAGAGAGTAAAAGTTATAAGCCTTAAATTTAGCTGTTTGCCATTCTCCACTGAGAAGCGACTCAGATGATAAATCCGTTTCTTCAGATTTTATATTTGTTGAAAATGATGGACCTTTTCGTACCATGTAGGATGTGTGCTTTCATT ]
[-] EMBL CD153317 [ GTTCGTAGGCATTTCTGAAAACGCCATATCACAAAGTATCCTACAGAATTCTGATCGTACACGCAGAAGAGGATGAAGATGTCCAGATGGTAAAGCGGCACCAAGAGAGTAAAAGTTATAAGCCTTAAATTTAGCTGTTTGCCATTCTCCACTGGAAAGCAACTCAGATGATAAATCCGTTTCTTCAGATTTTATATTTGTTG AAATGATGGACCTTTTCGTACCAAGTAGGATGTGTGCTTTAATTCGGTAACCAGTTTTCGTTTTTTCAATTGAGACTTTTCGTTATCTGGTAAGGGACGTCTAGACTCTTTTACATCTGACAACAACTGTTGCACATCATCTTTGACTTCTGGGACCAAACGATGCAAACAAGGTACACCAGCCTCATTTTTGGTGAGTGCTATCCACTTTGACGAAAGGGCTTTGCGTAATACCTATTTTAGCACCTGGAAATATTTTCAAAATATCACTTTGTGGTATCCCTGATTCTGGGATAGCACGGTATACTCTGTATTCATGGCTGCCACTGTTTAAAATCTCATCACCTTCTTCTGTTAACTGTA ]
[-] EMBL CD153141 [ CGTAGGCATTTCTGANAACNCCATATCACAAAGTATCCTACAGAATTCTGATCGTACACGCAGAAGAGGATGAAGATGTCCAGATGGTAAAGCGGCACCAAGAGAGTAAAAGTTATAAGCCTTAAATTTAGCTGTTTGCCATTCTCCACTGGAAAGCAACTCAGATGATAAATCCGTTTCTTCAGATTTTATATTTGTTGAAAATGATGGACCTTTTCGTACCAAGTAGGATGTGTGCTTTAATTCGGTAACCAGTTTTCGTTTTTTCAATTGAGACTTTTCGTTATCTGGTAAGGGACGTCTAGACTCTTTTACATCTGACAACAACTGTTGCACATCATCTTTGACTTCTGGGACCAAACGATGCAAACAAGGTACACCAGCCTCATTTTTGGTGAGTGCTATCCACTTTGACGAAAGGGCTTTGC TAATACCTATTTTAGCACCTGGAAATATTTTCAAAATATCACTTTGTGGTATCCCTGATTCTGGGATAGCACGGTATACTCTGTATTCATGGCTGCCACTGTTTAAAATCTCATCACCTTCTTCTGTTAACTGTA ]
[-] EMBL CD153227 [ GCATTTCTGANAACNCCATATCACAAAGTATCCTACAGAATTCTGATCGTACACGCAGAAGAGGATGAAGATGTCCAGATGGTAAAGCGGCACCAAGAGAGTAAAAGTTATAAGCCTTAAATTTAGCTGTTTGCCATTCTCCACTGGAAAGCAACTCAGATGATAAATCCGTTTCTTCAGATTTTATATTTGTTGAAAATGATGGACCTTTTCGTACCAAGTAGGATGTGTGCTTTAATTCGGTAACCAGTTTTCGTTTTTTCAATTGAGACTTTTCGTTATCTGGTAAGGGACGTCTAGACTCTTTTACATCTGACAACAACTGTTGCACATCATCTTTGACTTCTGGGACCAAACGATGCAAACAAGGTACACCAGCCTCATTTTTGGTGAGTGCTATCCACTTTGACGAAAGGGCTTTGC TAATACCTATTTTAGCACCTGGAAATATTTTCAAAATATCACTTTGTGGTATCCCTGATTCTGGGATAGCACGGTATACTCTGTATTCATGGCTGCCACTGTTTAAAATCTCATCACCTTCTTCTGTTAACTGTA ]
[-] EMBL CD148687 [ TTCTGAAAACCCCATATCACAAAGTATCCTACAGAATTCTGATCGTACACGCAGAAGAGAATGAAGATGTACAGATGGTAAAGCGGCACCAAGAGAGTAAAAGTTATAAGCCTTAAATTTAGCTGTTTGCCATTCTCCACTGGAAAGCAACTCAGATGATAAATCCGTTTCTTCAGATTTTATATTTGTTGAAAATGATGGACGTTTTCGTACCAAGTAGGATGCGTGCTTTAAGTCGGTAACCAGTTTTCGTTTTTTCAATTGAGACTTTTCGTTATCTGGTAAGGGACGTCTAGACTCTTTTACATCTGACAACAACTGTTGCACATCATCTTTGACTTCTGGGACCAAACGATGCAAACAAGGTACACCAGCCTCATTTTTGGTGAGTGCTATCCACTTTGACGAAAGGGCTTTGC TAATACCTATTTTAGCACCTGGAAATATTTTCAAAATATCACTTTGTGGTATCCCTGATTCTGGGATAGCACGGTATACTCTGTATTCATGGCTGCCACTGTTTAAAATCTCATCACCTTCTTCTGTTAACTGTAAAA]
[-] EMBL CD153439 [ TGGAAAGCAACTCAGATGATAAATCCGTTTCTTCAGATTTTATATTTGTTGAAAATGATGGACCTTTTCGTACCAAGTAGGATGTGTGCTTTAATTCGGTAACCAGTTTTCGTTTTTTCAATTGAGACTTTTCGTTATCTGGTAAGGGACGTCTAGACTCTTTTACATCTGACAACAACTGTTGCACATCATCTTTGACTTCTGGGACCAAACGATGCAAACAAGGTACACCAGCCTCATTTTTGGTGAGTGCTATCCACTTTGACGAAAGGGCTTTGC TAATACCTATTTTAGCACCTGGAAATATTTTCAAAATATCACTTTGTGGTATCCCTGAGTCTGGGATAGCACGGTATACTCTGTATTCATGGCTGCCACTGTTTAAAATCTCATCACCTTCTTCTGTTAACTGTA ]
[-] EMBL CD152983 [ TTGACTTCTGGGACCAAACGATGCAAACAAGGTACACCAGCCTCATTTTTGGTGAGTGCTATCCACTTTGACGAAAGGGCTTTGC TAATACCTATTTTAGCACCTGGAAATATTTTCAAAATATCACTTTGTGGTATCCCTGATTCTGGGATAGCACGGTATACTCTGTATTCATGGCTGCCACTGTTTAAAATCTCATCACCTTCTTCTGTTAACTGTA ]
consensusID : consensus_10077#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 343 fasta sequence
[CCAAGTAGGATGTGTGCTNTAATTCGGTAACCAGTTTTCGTTTNTCAATTGAGACTNTTCGTTATCTGGTAAGGGACGTCTAGACTCTTTTACATCTGACAACAACTGTTGCACATCATCTTTGACTTCTGGGACCAAACGATGCAAACAAGGTACACCAGCCTCATTTTTGGTGAGTGCTATCCACTTTGACGAAAGGGCTTTGCTAATACCTATTTTAGCGCCTGGGAATATTTTCTAAAAAAAACACTTTGGTGTGGGTGCCCCTTTTGGGTAAGCGCGGTATACTCTGTATTCATGGCTGCCNCTCCTTTTAATTCATCACCTTCTTCTGTTAACTGTA]
[-] EMBL CD153215 [CCAAGTAGGATGTGTGCTNTAATTCGGTAACCAGTTTTCGTTTNTCAATTGAGACTNTTCGTTATCTGGTAAGGGACGTCTAGACTCTTTTACATCTGACAACAACTGTTGCACATCATCTTTGACTTCTGGGACCAAACGATGCAAACAAGGTACACCAGCCTCATTTTTGGTGAGTGCTATCCACTTTGACGAAAGGGCTTTGCTAATACCTATTTTAGCGCCTGGGAATATTTTCTAAAAAAAACACTTTGGTGTGGGTGCCCCTTTTGGGTAAGCGCGGTATACTCTGTATTCATGGCTGCCNCTCCTTTTAATTCATCACCTTCTTCTGTTAACTGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10077#0 ATTGGTCTAAGCATTTCCGGACGAAATAGTCCCGAATTACCTATTTCCACCCACTTCTTG 60
consensus_10077#1 ------------------------------------------------------------
consensus_10077#0 AGACCAGGATGATAACTAAAAATTTCCATACTCGGTTCAGTATATGGATTATACGCTGGT 120
consensus_10077#1 ------------------------------------------------------------
consensus_10077#0 TTGAATCTCAGTTGCGTAAGTCCCAACTTTGAAAAGAAAGTTCGAATTACACTTTTTAAA 180
consensus_10077#1 ------------------------------------------------------------
consensus_10077#0 TGGCCTAAGCTAAGACCAAAGTCAGCAACTAGACCTTCAACTTGATGGAATTCTGCCAAA 240
consensus_10077#1 ------------------------------------------------------------
consensus_10077#0 TGAGTGGCGCCCAGATTTTCATTTCGAAACACACGATCAATACTGTAATATTTAGCTGGA 300
consensus_10077#1 ------------------------------------------------------------
consensus_10077#0 GTAAATGGATTCTTTTTAGATAATGCATGGAGCATACGGGCGCTCACTGCTGTTGTATGT 360
consensus_10077#1 ------------------------------------------------------------
consensus_10077#0 GTACGCAACAAATTTTTCTCCGCTTCCTCCATTAGCCATGGTGACTGATAGCCTCGACTA 420
consensus_10077#1 ------------------------------------------------------------
consensus_10077#0 CCAAAAGCACCTTGACTATGCACAGTACGAACTTTATCAATGTAACAAGTTTCGACTGTT 480
consensus_10077#1 ------------------------------------------------------------
consensus_10077#0 TTGTTAATATCTGAAATCTCAGGATCTGAAAGGAAAAATGTATCATGTGCATCTCGAGCA 540
consensus_10077#1 ------------------------------------------------------------
consensus_10077#0 GGATGTTGTTGTGGTTGAAAAAGACTATCGAAATTCCAAAAACTGCATTCAACATAATTG 600
consensus_10077#1 ------------------------------------------------------------
consensus_10077#0 TTCGTAGGCATTTCTGAAAACCCCATATCACAAAGTATCCTACAGAATTCTGATCGTACA 660
consensus_10077#1 ------------------------------------------------------------
consensus_10077#0 CGCAGAAGAGGATGAAGATGTCCAGATGGTAAAGCGGCACCAAGAGAGTAAAAGTTATAA 720
consensus_10077#1 ------------------------------------------------------------
consensus_10077#0 GCCTTAAATTTAGCTGTTTGCCATTCTCCACTGGAAAGCAACTCAGATGATAAATCCGTT 780
consensus_10077#1 ------------------------------------------------------------
consensus_10077#0 TCTTCAGATTTTATATTTGTTGAAAATGATGGACCTTTTCGTACCAAGTAGGATGTGTGC 840
consensus_10077#1 -------------------------------------------CCAAGTAGGATGTGTGC 17
*****************
consensus_10077#0 TTTAATTCGGTAACCAGTTTTCGTTTTTTCAATTGAGACTTTTCGTTATCTGGTAAGGGA 900
consensus_10077#1 TNTAATTCGGTAACCAGTTTTCGTTTNT-CAATTGAGACTNTTCGTTATCTGGTAAGGGA 76
* ************************ * *********** *******************
consensus_10077#0 CGTCTAGACTCTTTTACATCTGACAACAACTGTTGCACATCATCTTTGACTTCTGGGACC 960
consensus_10077#1 CGTCTAGACTCTTTTACATCTGACAACAACTGTTGCACATCATCTTTGACTTCTGGGACC 136
************************************************************
consensus_10077#0 AAACGATGCAAACAAGGTACACCAGCCTCATTTTTGGTGAGTGCTATCCACTTTGACGAA 1020
consensus_10077#1 AAACGATGCAAACAAGGTACACCAGCCTCATTTTTGGTGAGTGCTATCCACTTTGACGAA 196
************************************************************
consensus_10077#0 AGGGCTTTGCTAATACCTATTTTAGCACCTGGAAATATTTTCAAAATATCACTTTGTGGT 1080
consensus_10077#1 AGGGCTTTGCTAATACCTATTTTAGCGCCTGGGAATATTTTCTAAAAAAAACACTTTGGT 256
************************** ***** ********* *** * ** * ****
consensus_10077#0 ATCCCTGA---TTCTGGGATAGCACGGTATACTCTGTATTCATGGCTGCCACTGTTTAAA 1137
consensus_10077#1 GTGGGTGCCCCTTTTGGGTAAGCGCGGTATACTCTGTATTCATGGCTGCCNCTCCTTTTA 316
* ** ** **** *** ************************** ** ** *
consensus_10077#0 ATCTCATCACCTTCTTCTGTTAACTGTAAAA 1168
consensus_10077#1 AT-TCATCACCTTCTTCTGTTAACTGTA--- 343
** *************************
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||