These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10079#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1413 fasta sequence [ACCAATACATGGACCACATGCGTTAGCTAATACTACGCCACCAATAGATTGAAATATTTTTGTGATACCGTCACGTTCAATAGTTGCACGAATTTGTTCACTACCACGTGTTATAAAGAATCGCGATTTAATTTTAACACCTTTATCTAAAGCTTGACGAGCTAAGCTGGCAGCACGTGCCATATCCTCATAAGATGAATTGGTACAGGAACCGATAAGTCCAGCACTGATATGCAGTGGCCAACCTGCTTTGGATGCATGACTGGACAATTGTGAAATCGGATGTGCGAGATCTGGTGTAAACGGACCATTTACATGTGGTTCTAAAGTATCCAAGTTTATTTCAATTATTTTATCATATTTACAATTTACATCTGATGTAAGTAAAGAAGCCTTATGCTTTGAAGCTAAATCTCCCATATCCGCTCTATTTGTAGCACGTAAATAATCCAGCATTCGATCGTTAAATGGAAAAATTGATGTTGTAGCACCGATCTCAGCGCCCATATTACAAATTGTAGCCATACCGGTGCATGAAATCGATTCAACACCGGGACCATAATATTCAACGATAGCTCCAGTTCCACCTTTCACTGTTAGGATTTCAGCTACCTTTAGTATGATATCTTTTGGACTTGTCCAACCAGATAATTTACCTGTTAGATTTACGCCAATTACTAATGGGGCTTTCAACTCCCATGGTAAATTAGCCATTACATCTACAGCATCTGCACCACCAACACCAATACATAAACCACCAAGTCCGCCACCATTAGGTGTATGACTATCGGTGCCAATGATTAATGCACCAGGAAATGCGTAGTTCTCTAAAACAATTTGGTGAATTATTCCTGATCCAGGCTTCCAAAATCCAATACCATATTTAGCAGATGCAGATGCAAGAAATTCGTAAACTTCCTTGTTGGTATCATTTGCACGATTAAGATCTGTTCCTGCACCATCTTTAGCCTCAATAAGATGGTCACAGTGGACAGTTGAGGGTACGGCGACACGTGGAAGACCACTGC-TAATAAATTGTAATAGAGCCATCTGTGCTGTAGCATCTTGC-ATTGCAACACGATCGGGTCTAAGCATGAGATAGCTTTTACCTCTTTCAATATTTGAAGTTTTTGGATTATCGAGATGAGAATACAGAACTTTCTCGGCAAGTGTTAACGGATGTCCAAGTCGTTTTTTCACTATATTTAGATTGTGTTCCAGTTTATCATAATCTAGGGTCTTGTCTTCAAATTTACTAAGTGCCACTGAACGACTTATGGGAGAAAATCGAACAAAATTAACCCTGCCTGTATTCTTCAACAGCAGATTGACGAACGTCATGATAAAATAAACCACGATATTTTCTCTTGTCGAATAGATCAGGAAAACGAAAGTGTACCGAGACTAGAGCCG] [+] EMBL CD113990 [ACCAATACATGGACCACATGCGTTAGCTAATACTACGCCACCAATAGATTGAAATATTTTTGTGATACCGTCACGTTCAATAGTTGCACGAATTTGTTCACTACCACGTGTTATAAAGAATCGCGATTTAATTTTAACACCTTTATCTAAAGCTTGACGAGCTAAGCTGGCAGCACGTGCCATATCCTCATAAGATGAATTGGTTCAGGAACCGATAAGTCCAGCACTGATATGCAGTGGCCAACCTGCTTTGGATGCATGACTGGACAATTGTGAAATCGGATGTGCGAGATCTGGTGTAAACGGACCATTTACATGTGGTTCTAAAGTATCCAAGCTTATTTCAATTAT ] [-] EMBL CD116245 [ ACGAATTTGTTCACTACCAGGTGTTATAAAGAATTGTGATTTAATTTTAACACCTTTATCTAAAGCTTGACGAGCTAAGCTGGCAGCACGTGCCATATCCTCATAAGATGAATTGGTACAGGAACCGATAAGTCCAGCACTGATATGCAGTGGCCAACCTGCTTTGGATGCATGACT GACAATTGTGAAATCGGATGTGCGAGATCTGGTGTAAACGGACCATTTACATGTGGTTCTAAAGTATCCAAGTTTATTTCAATTATTTTATCATATTTACAATTTACATCTGATGTAAGTAAAGAAGCCTTATGCTTTGAAGCTAAATCTCCCATATCCGCTCTATTTGTAGCACGTAAATAATCCAGCATTCGATCGTTAAATGGAAAAATTGATGTTGTAGCACCGATCTCAGCGCCCATATTACAAATTGTAGCCATACCGGTGCATGAAATCGATTCAACACCGGGACCATAATATTCAACAATAGC ] [-] EMBL CD139622 [ ATNTAA TTTAACACCTTANTCTAAAGCTTGACGAGCTAAGCTGGCAGCACGTGCCATATCCTCATAAGATGAATTGGTACAGGAACCGATAAGTCCAGCACTGATATGCAGTGGCCAACCTGCTTTGGATGCATGACTGGACAATTGTGAAATCGGATGTGCGAGATCTGGTGTAAACGGACCATTTACATGTGGTTCTAAAGTATCCAAGTTTATTTCAATTATTTTATCATATTTACAATTTACATCTGATGTAAGTAAAGAA ] [-] EMBL CD139609 [ ACGTGCCATATCCTCATAGNATGAATTGGTACAGGAACCGATAAGTCCAGCACTGATATGCAGTGGCCAACCTGCTTTGGATGCATGACTGGACAATTGTGAAATCGGATGTGCGAGATCTGGTGTAAACGGACCATTTACATGTGGTTCTAAAGTATCCAAGTTTATTTCAATTATTTTATCATATTTACAATTTACATCTGATGTAAGTAAAGAA ] [+] EMBL CD189142 [ CATGACTGGACAATTGTGAAATCGGATGTGCGAGATCTGGTGTAAACGGACCATTTACATGTGGTTCTAAAGTATCCAAGTTTATTTCAATTATTTTATCATATTTACAATTTACATCTGATGTAAGTAAAGAAGCCTTATGCTTTGAAGCTAAATCTCCCATATCCGCTCTATTTGTAGCACGTAAATAATCCAGCATTCGATCGTTAAATGGAAAAATTGATGTTGTAGCACCGATCTCAGCGCCCATATTACAAATTGTAGCCATACCGGTGCATGAAATCGATTCAACACCGGGACCATAATATTCAACGATAGCTCCAGTTCCACCTTTCACTGTTAGGAT ] [+] EMBL CD163181 [ CAGGTAAAT ATCCAGCATTCGATCGTTAAATGGAAAAATTGATGTTGTAGCACCGATCTCAGCGCCCATATTACAAATTGTAGCCATACCGGTGCATGAAATCGATTCAACACCGGGACCATAATATTCAACGATAGCTCCAGTTCCACCTTTCACTGTTAGGATTTCAGCTACCTTTAGTATGATATCTTTTGGACTTGTCCAACCAGATAATTTACCTGTTAGATTTACGCCAATTACTAATGGGGCTTTCAACTCCCATGGTAAATTAGCCATTACATCTACAGCATCTGCACCACCAACACCAATACATAAACCACCAAGTCCGCCACCATTAGGTGTATGACTATCGGTGCCAATGATTAATGCACCAGGAAATGCGTAGTTCTCTGAAACAATTTGGTGAATTATTCCTGATCCAGGCTTCCAAAATCCAATACCATATTTAGCAGATGCAGATGCAAGAAAT ] [+] EMBL CD097927 [ CAGCTACCTTTAATATGATATCTTTTGGACTTGTCCAACCAGATAATTTACCTGTTAGATTTACGCCAATTACTAATGGGGCTTTCAACTCCCATGGTAAATTAGCCATTACATCTACAGCATCTGCACCACCAACACCAATACATAAACCACCAAGTCCGCCACCATTAGGTGTATGACTATCGGTGCCAATGATTAATGCACCAGGAAATGCGTAGTTCTCTAAAACAATTTGGTGAATTATTCCTGATCCAGGCTTCCAAAATCCAATACCATATTTAGCAGATGCAGATGCAAGAAATTCGTAAACTTCCTTGTTGGTATCATTTGCACGATTAAGATCTGTTCCTGCACCATCTTTAGCCTCAATAAGATGGTCACAGTGGACAGTTGAGGGTACGGCGACACGTGGAAGACCACTGC TAATAAATTGTAATAGAGCCATCTGTGCTGTAGCATCTTGC ATTGCAACACGATCGGGTCTAAGCATGAGAT ] [+] EMBL CD144384 [ GTGTATGACTATCGGTGCCAATGATTAATGCACCAGGAAATGCGTAGTTCTCTAAAACAATTTGGTGAATTATTCCTGATCCAGGCTTCCAAAATCCAATACCATA ] [-] EMBL CD094209 [ ATACCATATTTAGCAGATGCAGATGCAAGAAATTCGTAAACTTCCTTGTTGGTATCATTTGCACGATTAAGATCTGTTCCTGCACCATCTTTAGCCTCAATAAGATGGTCACAGTGGACAGTTGAGGGTACGGCGACACGTGGAAGACCACTGC TAATAAATTGTAATAGAGCCATCTGTGCTGTAGCATCTTGC ATTGCAACACGATCGGGTCTAAGCATGAGATAGCTTTTACC ] [+] EMBL CD144385 [ TTCCTTGTTGGTATCATTTGCACGATTAAGATCTGTTCCTGCACCATCTTTAGCCTCAATAAGATGGTCACAGTGGACAGTTGAGGGTACGGCGACACGTGGAAGACCACTGCNTAAT AATTGTAATAGAGCCATCTGTGCTGTAGCATCTTGCNATTGC ACACGATCGGGTC ] [-] EMBL CD132371 [ CAGTTGAGGGTACGGCGACACGTGGAAGACCACTGC TAATAAATTGTAATAGAGCCATCTGTGCTGTAGCATCTTGC ATTGCAACACGATCGGGTCTAAGCATGAGATAGCTTTTACCTCTTTCAATATTTGAAGTTTTTGGATTATCGAGATGAGAATACAGAACTTTCTCGGCAAGTGTTAACGGATGTCCAAGTCGTTTTTTCACTATATTTAGATTGTGTTCCAGTTTATCATAATCTAGGGTCTTGTCTTCAAATTTACTAAGTGCCACTGAACGACTTATGGGAGAAAATCGAACAAAATTAACCCTGCCTGTATTCTTCAACAGCAGATTGACGAACGTCATGATAAAATAAACCACGATATTTTCTCTTGTCGAATAGATCAGGAAAACGAAAGTGTACCGAGACTAGAGCC ] [-] EMBL CD186433 [ C TAATAAATTGTAATAGAGCCATCTGTGCTGTAGCATCTTGC ATTGCAACACGATCGGGTCTAAGCATGAGATAGCTTTTACCTCTTTCAATATTTGAAGTTTTTGGATTATCGAGATGAGAATACAGAACTTTCTCGGCAAGTGTTAACGGATGTCCAAGTCGTTTTTTCACTATATTTAGATTGTGTTCCAGTTTATCATAATCTAGGGTCTTGTCTTCAAATTTACTAAGTGCCACTGAACGACTTATGGGAGAAAATCGAACAAAATTAACCCTGCCTGTATTCTTCAACAGCAGATTGACGAACGTCATGATAAAATAAACCACGATATTTTCTCTTGTCGAATAGATCAGGAAAACGAAAGTGTACCGAGACTAGAGCCG] consensusID : consensus_10079#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 253 fasta sequence [TTGCACGAATTTGTTCACTACCAGGTGTTATAAAGAATTGTGATTTAATTTTAACACCTTTATCTAAAGCTTGACGAGCTAAGCTGGCAGCACGTGCCATATCCTCATAAGATGAATTGGTACAGGAACCGATAAGTCCAGCACTGATATGCAGTGGCCAACCTGCTTTGGATGCATGACTGGACAACTAATAAGAATAACAATAATAATAATGTATGTATGCCAGTTAGCAAACATTAAATAAACTGTGTAA] [+] EMBL CD167579 [TTGCACGAATTTGTTCACTACCAGGTGTTATAAAGAATTGTGATTTAATTTTAACACCTTTATCTAAAGCTTGACGAGCTAAGCTGGCAGCACGTGCCATATCCTCATAAGATGAATTGGTACAGGAACCGATAAGTCCAGCACTGATATGCAGTGGCCAACCTGCTTTGGATGCATGACTGGACAACTAATAAGAATAACAATAATAATAATGTATGTATGCCAGTTAGCAAACATTAAATAAACTGTGTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10079#0 ACCAATACATGGACCACATGCGTTAGCTAATACTACGCCACCAATAGATTGAAATATTTT 60 consensus_10079#1 ------------------------------------------------------------ consensus_10079#0 TGTGATACCGTCACGTTCAATAGTTGCACGAATTTGTTCACTACCACGTGTTATAAAGAA 120 consensus_10079#1 -----------------------TTGCACGAATTTGTTCACTACCAGGTGTTATAAAGAA 37 *********************** ************* consensus_10079#0 TCGCGATTTAATTTTAACACCTTTATCTAAAGCTTGACGAGCTAAGCTGGCAGCACGTGC 180 consensus_10079#1 TTGTGATTTAATTTTAACACCTTTATCTAAAGCTTGACGAGCTAAGCTGGCAGCACGTGC 97 * * ******************************************************** consensus_10079#0 CATATCCTCATAAGATGAATTGGTACAGGAACCGATAAGTCCAGCACTGATATGCAGTGG 240 consensus_10079#1 CATATCCTCATAAGATGAATTGGTACAGGAACCGATAAGTCCAGCACTGATATGCAGTGG 157 ************************************************************ consensus_10079#0 CCAACCTGCTTTGGATGCATGACTGGACAATTGTGAAATCGGATGTGCGAGATCTGGTGT 300 consensus_10079#1 CCAACCTGCTTTGGATGCATGACTGGACAACTAATAAGAATAACAATAATAA--TAATGT 215 ****************************** * ** * * * *** consensus_10079#0 AAACGGACCATTTACATGTGGTTC--TAAAGTATCCAAGTTTATTTCAATTATTTTATCA 358 consensus_10079#1 ATGTATGCCAGTTAGCAAACATTAAATAAACTGTGTAA---------------------- 253 * *** *** ** **** * * ** consensus_10079#0 TATTTACAATTTACATCTGATGTAAGTAAAGAAGCCTTATGCTTTGAAGCTAAATCTCCC 418 consensus_10079#1 ------------------------------------------------------------ consensus_10079#0 ATATCCGCTCTATTTGTAGCACGTAAATAATCCAGCATTCGATCGTTAAATGGAAAAATT 478 consensus_10079#1 ------------------------------------------------------------ consensus_10079#0 GATGTTGTAGCACCGATCTCAGCGCCCATATTACAAATTGTAGCCATACCGGTGCATGAA 538 consensus_10079#1 ------------------------------------------------------------ consensus_10079#0 ATCGATTCAACACCGGGACCATAATATTCAACGATAGCTCCAGTTCCACCTTTCACTGTT 598 consensus_10079#1 ------------------------------------------------------------ consensus_10079#0 AGGATTTCAGCTACCTTTAGTATGATATCTTTTGGACTTGTCCAACCAGATAATTTACCT 658 consensus_10079#1 ------------------------------------------------------------ consensus_10079#0 GTTAGATTTACGCCAATTACTAATGGGGCTTTCAACTCCCATGGTAAATTAGCCATTACA 718 consensus_10079#1 ------------------------------------------------------------ consensus_10079#0 TCTACAGCATCTGCACCACCAACACCAATACATAAACCACCAAGTCCGCCACCATTAGGT 778 consensus_10079#1 ------------------------------------------------------------ consensus_10079#0 GTATGACTATCGGTGCCAATGATTAATGCACCAGGAAATGCGTAGTTCTCTAAAACAATT 838 consensus_10079#1 ------------------------------------------------------------ consensus_10079#0 TGGTGAATTATTCCTGATCCAGGCTTCCAAAATCCAATACCATATTTAGCAGATGCAGAT 898 consensus_10079#1 ------------------------------------------------------------ consensus_10079#0 GCAAGAAATTCGTAAACTTCCTTGTTGGTATCATTTGCACGATTAAGATCTGTTCCTGCA 958 consensus_10079#1 ------------------------------------------------------------ consensus_10079#0 CCATCTTTAGCCTCAATAAGATGGTCACAGTGGACAGTTGAGGGTACGGCGACACGTGGA 1018 consensus_10079#1 ------------------------------------------------------------ consensus_10079#0 AGACCACTGCTAATAAATTGTAATAGAGCCATCTGTGCTGTAGCATCTTGCATTGCAACA 1078 consensus_10079#1 ------------------------------------------------------------ consensus_10079#0 CGATCGGGTCTAAGCATGAGATAGCTTTTACCTCTTTCAATATTTGAAGTTTTTGGATTA 1138 consensus_10079#1 ------------------------------------------------------------ consensus_10079#0 TCGAGATGAGAATACAGAACTTTCTCGGCAAGTGTTAACGGATGTCCAAGTCGTTTTTTC 1198 consensus_10079#1 ------------------------------------------------------------ consensus_10079#0 ACTATATTTAGATTGTGTTCCAGTTTATCATAATCTAGGGTCTTGTCTTCAAATTTACTA 1258 consensus_10079#1 ------------------------------------------------------------ consensus_10079#0 AGTGCCACTGAACGACTTATGGGAGAAAATCGAACAAAATTAACCCTGCCTGTATTCTTC 1318 consensus_10079#1 ------------------------------------------------------------ consensus_10079#0 AACAGCAGATTGACGAACGTCATGATAAAATAAACCACGATATTTTCTCTTGTCGAATAG 1378 consensus_10079#1 ------------------------------------------------------------ consensus_10079#0 ATCAGGAAAACGAAAGTGTACCGAGACTAGAGCCG 1413 consensus_10079#1 ----------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||