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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10079#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1413 fasta sequence
[ACCAATACATGGACCACATGCGTTAGCTAATACTACGCCACCAATAGATTGAAATATTTTTGTGATACCGTCACGTTCAATAGTTGCACGAATTTGTTCACTACCACGTGTTATAAAGAATCGCGATTTAATTTTAACACCTTTATCTAAAGCTTGACGAGCTAAGCTGGCAGCACGTGCCATATCCTCATAAGATGAATTGGTACAGGAACCGATAAGTCCAGCACTGATATGCAGTGGCCAACCTGCTTTGGATGCATGACTGGACAATTGTGAAATCGGATGTGCGAGATCTGGTGTAAACGGACCATTTACATGTGGTTCTAAAGTATCCAAGTTTATTTCAATTATTTTATCATATTTACAATTTACATCTGATGTAAGTAAAGAAGCCTTATGCTTTGAAGCTAAATCTCCCATATCCGCTCTATTTGTAGCACGTAAATAATCCAGCATTCGATCGTTAAATGGAAAAATTGATGTTGTAGCACCGATCTCAGCGCCCATATTACAAATTGTAGCCATACCGGTGCATGAAATCGATTCAACACCGGGACCATAATATTCAACGATAGCTCCAGTTCCACCTTTCACTGTTAGGATTTCAGCTACCTTTAGTATGATATCTTTTGGACTTGTCCAACCAGATAATTTACCTGTTAGATTTACGCCAATTACTAATGGGGCTTTCAACTCCCATGGTAAATTAGCCATTACATCTACAGCATCTGCACCACCAACACCAATACATAAACCACCAAGTCCGCCACCATTAGGTGTATGACTATCGGTGCCAATGATTAATGCACCAGGAAATGCGTAGTTCTCTAAAACAATTTGGTGAATTATTCCTGATCCAGGCTTCCAAAATCCAATACCATATTTAGCAGATGCAGATGCAAGAAATTCGTAAACTTCCTTGTTGGTATCATTTGCACGATTAAGATCTGTTCCTGCACCATCTTTAGCCTCAATAAGATGGTCACAGTGGACAGTTGAGGGTACGGCGACACGTGGAAGACCACTGC-TAATAAATTGTAATAGAGCCATCTGTGCTGTAGCATCTTGC-ATTGCAACACGATCGGGTCTAAGCATGAGATAGCTTTTACCTCTTTCAATATTTGAAGTTTTTGGATTATCGAGATGAGAATACAGAACTTTCTCGGCAAGTGTTAACGGATGTCCAAGTCGTTTTTTCACTATATTTAGATTGTGTTCCAGTTTATCATAATCTAGGGTCTTGTCTTCAAATTTACTAAGTGCCACTGAACGACTTATGGGAGAAAATCGAACAAAATTAACCCTGCCTGTATTCTTCAACAGCAGATTGACGAACGTCATGATAAAATAAACCACGATATTTTCTCTTGTCGAATAGATCAGGAAAACGAAAGTGTACCGAGACTAGAGCCG]
[+] EMBL CD113990 [ACCAATACATGGACCACATGCGTTAGCTAATACTACGCCACCAATAGATTGAAATATTTTTGTGATACCGTCACGTTCAATAGTTGCACGAATTTGTTCACTACCACGTGTTATAAAGAATCGCGATTTAATTTTAACACCTTTATCTAAAGCTTGACGAGCTAAGCTGGCAGCACGTGCCATATCCTCATAAGATGAATTGGTTCAGGAACCGATAAGTCCAGCACTGATATGCAGTGGCCAACCTGCTTTGGATGCATGACTGGACAATTGTGAAATCGGATGTGCGAGATCTGGTGTAAACGGACCATTTACATGTGGTTCTAAAGTATCCAAGCTTATTTCAATTAT ]
[-] EMBL CD116245 [ ACGAATTTGTTCACTACCAGGTGTTATAAAGAATTGTGATTTAATTTTAACACCTTTATCTAAAGCTTGACGAGCTAAGCTGGCAGCACGTGCCATATCCTCATAAGATGAATTGGTACAGGAACCGATAAGTCCAGCACTGATATGCAGTGGCCAACCTGCTTTGGATGCATGACT GACAATTGTGAAATCGGATGTGCGAGATCTGGTGTAAACGGACCATTTACATGTGGTTCTAAAGTATCCAAGTTTATTTCAATTATTTTATCATATTTACAATTTACATCTGATGTAAGTAAAGAAGCCTTATGCTTTGAAGCTAAATCTCCCATATCCGCTCTATTTGTAGCACGTAAATAATCCAGCATTCGATCGTTAAATGGAAAAATTGATGTTGTAGCACCGATCTCAGCGCCCATATTACAAATTGTAGCCATACCGGTGCATGAAATCGATTCAACACCGGGACCATAATATTCAACAATAGC ]
[-] EMBL CD139622 [ ATNTAA TTTAACACCTTANTCTAAAGCTTGACGAGCTAAGCTGGCAGCACGTGCCATATCCTCATAAGATGAATTGGTACAGGAACCGATAAGTCCAGCACTGATATGCAGTGGCCAACCTGCTTTGGATGCATGACTGGACAATTGTGAAATCGGATGTGCGAGATCTGGTGTAAACGGACCATTTACATGTGGTTCTAAAGTATCCAAGTTTATTTCAATTATTTTATCATATTTACAATTTACATCTGATGTAAGTAAAGAA ]
[-] EMBL CD139609 [ ACGTGCCATATCCTCATAGNATGAATTGGTACAGGAACCGATAAGTCCAGCACTGATATGCAGTGGCCAACCTGCTTTGGATGCATGACTGGACAATTGTGAAATCGGATGTGCGAGATCTGGTGTAAACGGACCATTTACATGTGGTTCTAAAGTATCCAAGTTTATTTCAATTATTTTATCATATTTACAATTTACATCTGATGTAAGTAAAGAA ]
[+] EMBL CD189142 [ CATGACTGGACAATTGTGAAATCGGATGTGCGAGATCTGGTGTAAACGGACCATTTACATGTGGTTCTAAAGTATCCAAGTTTATTTCAATTATTTTATCATATTTACAATTTACATCTGATGTAAGTAAAGAAGCCTTATGCTTTGAAGCTAAATCTCCCATATCCGCTCTATTTGTAGCACGTAAATAATCCAGCATTCGATCGTTAAATGGAAAAATTGATGTTGTAGCACCGATCTCAGCGCCCATATTACAAATTGTAGCCATACCGGTGCATGAAATCGATTCAACACCGGGACCATAATATTCAACGATAGCTCCAGTTCCACCTTTCACTGTTAGGAT ]
[+] EMBL CD163181 [ CAGGTAAAT ATCCAGCATTCGATCGTTAAATGGAAAAATTGATGTTGTAGCACCGATCTCAGCGCCCATATTACAAATTGTAGCCATACCGGTGCATGAAATCGATTCAACACCGGGACCATAATATTCAACGATAGCTCCAGTTCCACCTTTCACTGTTAGGATTTCAGCTACCTTTAGTATGATATCTTTTGGACTTGTCCAACCAGATAATTTACCTGTTAGATTTACGCCAATTACTAATGGGGCTTTCAACTCCCATGGTAAATTAGCCATTACATCTACAGCATCTGCACCACCAACACCAATACATAAACCACCAAGTCCGCCACCATTAGGTGTATGACTATCGGTGCCAATGATTAATGCACCAGGAAATGCGTAGTTCTCTGAAACAATTTGGTGAATTATTCCTGATCCAGGCTTCCAAAATCCAATACCATATTTAGCAGATGCAGATGCAAGAAAT ]
[+] EMBL CD097927 [ CAGCTACCTTTAATATGATATCTTTTGGACTTGTCCAACCAGATAATTTACCTGTTAGATTTACGCCAATTACTAATGGGGCTTTCAACTCCCATGGTAAATTAGCCATTACATCTACAGCATCTGCACCACCAACACCAATACATAAACCACCAAGTCCGCCACCATTAGGTGTATGACTATCGGTGCCAATGATTAATGCACCAGGAAATGCGTAGTTCTCTAAAACAATTTGGTGAATTATTCCTGATCCAGGCTTCCAAAATCCAATACCATATTTAGCAGATGCAGATGCAAGAAATTCGTAAACTTCCTTGTTGGTATCATTTGCACGATTAAGATCTGTTCCTGCACCATCTTTAGCCTCAATAAGATGGTCACAGTGGACAGTTGAGGGTACGGCGACACGTGGAAGACCACTGC TAATAAATTGTAATAGAGCCATCTGTGCTGTAGCATCTTGC ATTGCAACACGATCGGGTCTAAGCATGAGAT ]
[+] EMBL CD144384 [ GTGTATGACTATCGGTGCCAATGATTAATGCACCAGGAAATGCGTAGTTCTCTAAAACAATTTGGTGAATTATTCCTGATCCAGGCTTCCAAAATCCAATACCATA ]
[-] EMBL CD094209 [ ATACCATATTTAGCAGATGCAGATGCAAGAAATTCGTAAACTTCCTTGTTGGTATCATTTGCACGATTAAGATCTGTTCCTGCACCATCTTTAGCCTCAATAAGATGGTCACAGTGGACAGTTGAGGGTACGGCGACACGTGGAAGACCACTGC TAATAAATTGTAATAGAGCCATCTGTGCTGTAGCATCTTGC ATTGCAACACGATCGGGTCTAAGCATGAGATAGCTTTTACC ]
[+] EMBL CD144385 [ TTCCTTGTTGGTATCATTTGCACGATTAAGATCTGTTCCTGCACCATCTTTAGCCTCAATAAGATGGTCACAGTGGACAGTTGAGGGTACGGCGACACGTGGAAGACCACTGCNTAAT AATTGTAATAGAGCCATCTGTGCTGTAGCATCTTGCNATTGC ACACGATCGGGTC ]
[-] EMBL CD132371 [ CAGTTGAGGGTACGGCGACACGTGGAAGACCACTGC TAATAAATTGTAATAGAGCCATCTGTGCTGTAGCATCTTGC ATTGCAACACGATCGGGTCTAAGCATGAGATAGCTTTTACCTCTTTCAATATTTGAAGTTTTTGGATTATCGAGATGAGAATACAGAACTTTCTCGGCAAGTGTTAACGGATGTCCAAGTCGTTTTTTCACTATATTTAGATTGTGTTCCAGTTTATCATAATCTAGGGTCTTGTCTTCAAATTTACTAAGTGCCACTGAACGACTTATGGGAGAAAATCGAACAAAATTAACCCTGCCTGTATTCTTCAACAGCAGATTGACGAACGTCATGATAAAATAAACCACGATATTTTCTCTTGTCGAATAGATCAGGAAAACGAAAGTGTACCGAGACTAGAGCC ]
[-] EMBL CD186433 [ C TAATAAATTGTAATAGAGCCATCTGTGCTGTAGCATCTTGC ATTGCAACACGATCGGGTCTAAGCATGAGATAGCTTTTACCTCTTTCAATATTTGAAGTTTTTGGATTATCGAGATGAGAATACAGAACTTTCTCGGCAAGTGTTAACGGATGTCCAAGTCGTTTTTTCACTATATTTAGATTGTGTTCCAGTTTATCATAATCTAGGGTCTTGTCTTCAAATTTACTAAGTGCCACTGAACGACTTATGGGAGAAAATCGAACAAAATTAACCCTGCCTGTATTCTTCAACAGCAGATTGACGAACGTCATGATAAAATAAACCACGATATTTTCTCTTGTCGAATAGATCAGGAAAACGAAAGTGTACCGAGACTAGAGCCG]
consensusID : consensus_10079#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 253 fasta sequence
[TTGCACGAATTTGTTCACTACCAGGTGTTATAAAGAATTGTGATTTAATTTTAACACCTTTATCTAAAGCTTGACGAGCTAAGCTGGCAGCACGTGCCATATCCTCATAAGATGAATTGGTACAGGAACCGATAAGTCCAGCACTGATATGCAGTGGCCAACCTGCTTTGGATGCATGACTGGACAACTAATAAGAATAACAATAATAATAATGTATGTATGCCAGTTAGCAAACATTAAATAAACTGTGTAA]
[+] EMBL CD167579 [TTGCACGAATTTGTTCACTACCAGGTGTTATAAAGAATTGTGATTTAATTTTAACACCTTTATCTAAAGCTTGACGAGCTAAGCTGGCAGCACGTGCCATATCCTCATAAGATGAATTGGTACAGGAACCGATAAGTCCAGCACTGATATGCAGTGGCCAACCTGCTTTGGATGCATGACTGGACAACTAATAAGAATAACAATAATAATAATGTATGTATGCCAGTTAGCAAACATTAAATAAACTGTGTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10079#0 ACCAATACATGGACCACATGCGTTAGCTAATACTACGCCACCAATAGATTGAAATATTTT 60
consensus_10079#1 ------------------------------------------------------------
consensus_10079#0 TGTGATACCGTCACGTTCAATAGTTGCACGAATTTGTTCACTACCACGTGTTATAAAGAA 120
consensus_10079#1 -----------------------TTGCACGAATTTGTTCACTACCAGGTGTTATAAAGAA 37
*********************** *************
consensus_10079#0 TCGCGATTTAATTTTAACACCTTTATCTAAAGCTTGACGAGCTAAGCTGGCAGCACGTGC 180
consensus_10079#1 TTGTGATTTAATTTTAACACCTTTATCTAAAGCTTGACGAGCTAAGCTGGCAGCACGTGC 97
* * ********************************************************
consensus_10079#0 CATATCCTCATAAGATGAATTGGTACAGGAACCGATAAGTCCAGCACTGATATGCAGTGG 240
consensus_10079#1 CATATCCTCATAAGATGAATTGGTACAGGAACCGATAAGTCCAGCACTGATATGCAGTGG 157
************************************************************
consensus_10079#0 CCAACCTGCTTTGGATGCATGACTGGACAATTGTGAAATCGGATGTGCGAGATCTGGTGT 300
consensus_10079#1 CCAACCTGCTTTGGATGCATGACTGGACAACTAATAAGAATAACAATAATAA--TAATGT 215
****************************** * ** * * * ***
consensus_10079#0 AAACGGACCATTTACATGTGGTTC--TAAAGTATCCAAGTTTATTTCAATTATTTTATCA 358
consensus_10079#1 ATGTATGCCAGTTAGCAAACATTAAATAAACTGTGTAA---------------------- 253
* *** *** ** **** * * **
consensus_10079#0 TATTTACAATTTACATCTGATGTAAGTAAAGAAGCCTTATGCTTTGAAGCTAAATCTCCC 418
consensus_10079#1 ------------------------------------------------------------
consensus_10079#0 ATATCCGCTCTATTTGTAGCACGTAAATAATCCAGCATTCGATCGTTAAATGGAAAAATT 478
consensus_10079#1 ------------------------------------------------------------
consensus_10079#0 GATGTTGTAGCACCGATCTCAGCGCCCATATTACAAATTGTAGCCATACCGGTGCATGAA 538
consensus_10079#1 ------------------------------------------------------------
consensus_10079#0 ATCGATTCAACACCGGGACCATAATATTCAACGATAGCTCCAGTTCCACCTTTCACTGTT 598
consensus_10079#1 ------------------------------------------------------------
consensus_10079#0 AGGATTTCAGCTACCTTTAGTATGATATCTTTTGGACTTGTCCAACCAGATAATTTACCT 658
consensus_10079#1 ------------------------------------------------------------
consensus_10079#0 GTTAGATTTACGCCAATTACTAATGGGGCTTTCAACTCCCATGGTAAATTAGCCATTACA 718
consensus_10079#1 ------------------------------------------------------------
consensus_10079#0 TCTACAGCATCTGCACCACCAACACCAATACATAAACCACCAAGTCCGCCACCATTAGGT 778
consensus_10079#1 ------------------------------------------------------------
consensus_10079#0 GTATGACTATCGGTGCCAATGATTAATGCACCAGGAAATGCGTAGTTCTCTAAAACAATT 838
consensus_10079#1 ------------------------------------------------------------
consensus_10079#0 TGGTGAATTATTCCTGATCCAGGCTTCCAAAATCCAATACCATATTTAGCAGATGCAGAT 898
consensus_10079#1 ------------------------------------------------------------
consensus_10079#0 GCAAGAAATTCGTAAACTTCCTTGTTGGTATCATTTGCACGATTAAGATCTGTTCCTGCA 958
consensus_10079#1 ------------------------------------------------------------
consensus_10079#0 CCATCTTTAGCCTCAATAAGATGGTCACAGTGGACAGTTGAGGGTACGGCGACACGTGGA 1018
consensus_10079#1 ------------------------------------------------------------
consensus_10079#0 AGACCACTGCTAATAAATTGTAATAGAGCCATCTGTGCTGTAGCATCTTGCATTGCAACA 1078
consensus_10079#1 ------------------------------------------------------------
consensus_10079#0 CGATCGGGTCTAAGCATGAGATAGCTTTTACCTCTTTCAATATTTGAAGTTTTTGGATTA 1138
consensus_10079#1 ------------------------------------------------------------
consensus_10079#0 TCGAGATGAGAATACAGAACTTTCTCGGCAAGTGTTAACGGATGTCCAAGTCGTTTTTTC 1198
consensus_10079#1 ------------------------------------------------------------
consensus_10079#0 ACTATATTTAGATTGTGTTCCAGTTTATCATAATCTAGGGTCTTGTCTTCAAATTTACTA 1258
consensus_10079#1 ------------------------------------------------------------
consensus_10079#0 AGTGCCACTGAACGACTTATGGGAGAAAATCGAACAAAATTAACCCTGCCTGTATTCTTC 1318
consensus_10079#1 ------------------------------------------------------------
consensus_10079#0 AACAGCAGATTGACGAACGTCATGATAAAATAAACCACGATATTTTCTCTTGTCGAATAG 1378
consensus_10079#1 ------------------------------------------------------------
consensus_10079#0 ATCAGGAAAACGAAAGTGTACCGAGACTAGAGCCG 1413
consensus_10079#1 -----------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||