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Schistosoma mansoni
cluster # 10079 cluster # 10079       Sequences # 13       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10079#0 length = 1413 sequences # 12  
consensus_10079#1 length = 253 sequences # 1  

consensusID : consensus_10079#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 1413
fasta sequence
                              [ACCAATACATGGACCACATGCGTTAGCTAATACTACGCCACCAATAGATTGAAATATTTTTGTGATACCGTCACGTTCAATAGTTGCACGAATTTGTTCACTACCACGTGTTATAAAGAATCGCGATTTAATTTTAACACCTTTATCTAAAGCTTGACGAGCTAAGCTGGCAGCACGTGCCATATCCTCATAAGATGAATTGGTACAGGAACCGATAAGTCCAGCACTGATATGCAGTGGCCAACCTGCTTTGGATGCATGACTGGACAATTGTGAAATCGGATGTGCGAGATCTGGTGTAAACGGACCATTTACATGTGGTTCTAAAGTATCCAAGTTTATTTCAATTATTTTATCATATTTACAATTTACATCTGATGTAAGTAAAGAAGCCTTATGCTTTGAAGCTAAATCTCCCATATCCGCTCTATTTGTAGCACGTAAATAATCCAGCATTCGATCGTTAAATGGAAAAATTGATGTTGTAGCACCGATCTCAGCGCCCATATTACAAATTGTAGCCATACCGGTGCATGAAATCGATTCAACACCGGGACCATAATATTCAACGATAGCTCCAGTTCCACCTTTCACTGTTAGGATTTCAGCTACCTTTAGTATGATATCTTTTGGACTTGTCCAACCAGATAATTTACCTGTTAGATTTACGCCAATTACTAATGGGGCTTTCAACTCCCATGGTAAATTAGCCATTACATCTACAGCATCTGCACCACCAACACCAATACATAAACCACCAAGTCCGCCACCATTAGGTGTATGACTATCGGTGCCAATGATTAATGCACCAGGAAATGCGTAGTTCTCTAAAACAATTTGGTGAATTATTCCTGATCCAGGCTTCCAAAATCCAATACCATATTTAGCAGATGCAGATGCAAGAAATTCGTAAACTTCCTTGTTGGTATCATTTGCACGATTAAGATCTGTTCCTGCACCATCTTTAGCCTCAATAAGATGGTCACAGTGGACAGTTGAGGGTACGGCGACACGTGGAAGACCACTGC-TAATAAATTGTAATAGAGCCATCTGTGCTGTAGCATCTTGC-ATTGCAACACGATCGGGTCTAAGCATGAGATAGCTTTTACCTCTTTCAATATTTGAAGTTTTTGGATTATCGAGATGAGAATACAGAACTTTCTCGGCAAGTGTTAACGGATGTCCAAGTCGTTTTTTCACTATATTTAGATTGTGTTCCAGTTTATCATAATCTAGGGTCTTGTCTTCAAATTTACTAAGTGCCACTGAACGACTTATGGGAGAAAATCGAACAAAATTAACCCTGCCTGTATTCTTCAACAGCAGATTGACGAACGTCATGATAAAATAAACCACGATATTTTCTCTTGTCGAATAGATCAGGAAAACGAAAGTGTACCGAGACTAGAGCCG]

[+] EMBL CD113990             [ACCAATACATGGACCACATGCGTTAGCTAATACTACGCCACCAATAGATTGAAATATTTTTGTGATACCGTCACGTTCAATAGTTGCACGAATTTGTTCACTACCACGTGTTATAAAGAATCGCGATTTAATTTTAACACCTTTATCTAAAGCTTGACGAGCTAAGCTGGCAGCACGTGCCATATCCTCATAAGATGAATTGGTTCAGGAACCGATAAGTCCAGCACTGATATGCAGTGGCCAACCTGCTTTGGATGCATGACTGGACAATTGTGAAATCGGATGTGCGAGATCTGGTGTAAACGGACCATTTACATGTGGTTCTAAAGTATCCAAGCTTATTTCAATTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD116245             [                                                                                       ACGAATTTGTTCACTACCAGGTGTTATAAAGAATTGTGATTTAATTTTAACACCTTTATCTAAAGCTTGACGAGCTAAGCTGGCAGCACGTGCCATATCCTCATAAGATGAATTGGTACAGGAACCGATAAGTCCAGCACTGATATGCAGTGGCCAACCTGCTTTGGATGCATGACT GACAATTGTGAAATCGGATGTGCGAGATCTGGTGTAAACGGACCATTTACATGTGGTTCTAAAGTATCCAAGTTTATTTCAATTATTTTATCATATTTACAATTTACATCTGATGTAAGTAAAGAAGCCTTATGCTTTGAAGCTAAATCTCCCATATCCGCTCTATTTGTAGCACGTAAATAATCCAGCATTCGATCGTTAAATGGAAAAATTGATGTTGTAGCACCGATCTCAGCGCCCATATTACAAATTGTAGCCATACCGGTGCATGAAATCGATTCAACACCGGGACCATAATATTCAACAATAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD139622             [                                                                                                                             ATNTAA TTTAACACCTTANTCTAAAGCTTGACGAGCTAAGCTGGCAGCACGTGCCATATCCTCATAAGATGAATTGGTACAGGAACCGATAAGTCCAGCACTGATATGCAGTGGCCAACCTGCTTTGGATGCATGACTGGACAATTGTGAAATCGGATGTGCGAGATCTGGTGTAAACGGACCATTTACATGTGGTTCTAAAGTATCCAAGTTTATTTCAATTATTTTATCATATTTACAATTTACATCTGATGTAAGTAAAGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD139609             [                                                                                                                                                                              ACGTGCCATATCCTCATAGNATGAATTGGTACAGGAACCGATAAGTCCAGCACTGATATGCAGTGGCCAACCTGCTTTGGATGCATGACTGGACAATTGTGAAATCGGATGTGCGAGATCTGGTGTAAACGGACCATTTACATGTGGTTCTAAAGTATCCAAGTTTATTTCAATTATTTTATCATATTTACAATTTACATCTGATGTAAGTAAAGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD189142             [                                                                                                                                                                                                                                                                 CATGACTGGACAATTGTGAAATCGGATGTGCGAGATCTGGTGTAAACGGACCATTTACATGTGGTTCTAAAGTATCCAAGTTTATTTCAATTATTTTATCATATTTACAATTTACATCTGATGTAAGTAAAGAAGCCTTATGCTTTGAAGCTAAATCTCCCATATCCGCTCTATTTGTAGCACGTAAATAATCCAGCATTCGATCGTTAAATGGAAAAATTGATGTTGTAGCACCGATCTCAGCGCCCATATTACAAATTGTAGCCATACCGGTGCATGAAATCGATTCAACACCGGGACCATAATATTCAACGATAGCTCCAGTTCCACCTTTCACTGTTAGGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD163181             [                                                                                                                                                                                                                                                                                                                                                                                                                                                     CAGGTAAAT ATCCAGCATTCGATCGTTAAATGGAAAAATTGATGTTGTAGCACCGATCTCAGCGCCCATATTACAAATTGTAGCCATACCGGTGCATGAAATCGATTCAACACCGGGACCATAATATTCAACGATAGCTCCAGTTCCACCTTTCACTGTTAGGATTTCAGCTACCTTTAGTATGATATCTTTTGGACTTGTCCAACCAGATAATTTACCTGTTAGATTTACGCCAATTACTAATGGGGCTTTCAACTCCCATGGTAAATTAGCCATTACATCTACAGCATCTGCACCACCAACACCAATACATAAACCACCAAGTCCGCCACCATTAGGTGTATGACTATCGGTGCCAATGATTAATGCACCAGGAAATGCGTAGTTCTCTGAAACAATTTGGTGAATTATTCCTGATCCAGGCTTCCAAAATCCAATACCATATTTAGCAGATGCAGATGCAAGAAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD097927             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CAGCTACCTTTAATATGATATCTTTTGGACTTGTCCAACCAGATAATTTACCTGTTAGATTTACGCCAATTACTAATGGGGCTTTCAACTCCCATGGTAAATTAGCCATTACATCTACAGCATCTGCACCACCAACACCAATACATAAACCACCAAGTCCGCCACCATTAGGTGTATGACTATCGGTGCCAATGATTAATGCACCAGGAAATGCGTAGTTCTCTAAAACAATTTGGTGAATTATTCCTGATCCAGGCTTCCAAAATCCAATACCATATTTAGCAGATGCAGATGCAAGAAATTCGTAAACTTCCTTGTTGGTATCATTTGCACGATTAAGATCTGTTCCTGCACCATCTTTAGCCTCAATAAGATGGTCACAGTGGACAGTTGAGGGTACGGCGACACGTGGAAGACCACTGC TAATAAATTGTAATAGAGCCATCTGTGCTGTAGCATCTTGC ATTGCAACACGATCGGGTCTAAGCATGAGAT                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD144384             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GTGTATGACTATCGGTGCCAATGATTAATGCACCAGGAAATGCGTAGTTCTCTAAAACAATTTGGTGAATTATTCCTGATCCAGGCTTCCAAAATCCAATACCATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD094209             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ATACCATATTTAGCAGATGCAGATGCAAGAAATTCGTAAACTTCCTTGTTGGTATCATTTGCACGATTAAGATCTGTTCCTGCACCATCTTTAGCCTCAATAAGATGGTCACAGTGGACAGTTGAGGGTACGGCGACACGTGGAAGACCACTGC TAATAAATTGTAATAGAGCCATCTGTGCTGTAGCATCTTGC ATTGCAACACGATCGGGTCTAAGCATGAGATAGCTTTTACC                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD144385             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TTCCTTGTTGGTATCATTTGCACGATTAAGATCTGTTCCTGCACCATCTTTAGCCTCAATAAGATGGTCACAGTGGACAGTTGAGGGTACGGCGACACGTGGAAGACCACTGCNTAAT AATTGTAATAGAGCCATCTGTGCTGTAGCATCTTGCNATTGC ACACGATCGGGTC                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD132371             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CAGTTGAGGGTACGGCGACACGTGGAAGACCACTGC TAATAAATTGTAATAGAGCCATCTGTGCTGTAGCATCTTGC ATTGCAACACGATCGGGTCTAAGCATGAGATAGCTTTTACCTCTTTCAATATTTGAAGTTTTTGGATTATCGAGATGAGAATACAGAACTTTCTCGGCAAGTGTTAACGGATGTCCAAGTCGTTTTTTCACTATATTTAGATTGTGTTCCAGTTTATCATAATCTAGGGTCTTGTCTTCAAATTTACTAAGTGCCACTGAACGACTTATGGGAGAAAATCGAACAAAATTAACCCTGCCTGTATTCTTCAACAGCAGATTGACGAACGTCATGATAAAATAAACCACGATATTTTCTCTTGTCGAATAGATCAGGAAAACGAAAGTGTACCGAGACTAGAGCC ]
[-] EMBL CD186433             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   C TAATAAATTGTAATAGAGCCATCTGTGCTGTAGCATCTTGC ATTGCAACACGATCGGGTCTAAGCATGAGATAGCTTTTACCTCTTTCAATATTTGAAGTTTTTGGATTATCGAGATGAGAATACAGAACTTTCTCGGCAAGTGTTAACGGATGTCCAAGTCGTTTTTTCACTATATTTAGATTGTGTTCCAGTTTATCATAATCTAGGGTCTTGTCTTCAAATTTACTAAGTGCCACTGAACGACTTATGGGAGAAAATCGAACAAAATTAACCCTGCCTGTATTCTTCAACAGCAGATTGACGAACGTCATGATAAAATAAACCACGATATTTTCTCTTGTCGAATAGATCAGGAAAACGAAAGTGTACCGAGACTAGAGCCG]


>consensus_10079#0 ACCAATACATGGACCACATGCGTTAGCTAATACTACGCCACCAATAGATTGAAATATTTT TGTGATACCGTCACGTTCAATAGTTGCACGAATTTGTTCACTACCACGTGTTATAAAGAA TCGCGATTTAATTTTAACACCTTTATCTAAAGCTTGACGAGCTAAGCTGGCAGCACGTGC CATATCCTCATAAGATGAATTGGTACAGGAACCGATAAGTCCAGCACTGATATGCAGTGG CCAACCTGCTTTGGATGCATGACTGGACAATTGTGAAATCGGATGTGCGAGATCTGGTGT AAACGGACCATTTACATGTGGTTCTAAAGTATCCAAGTTTATTTCAATTATTTTATCATA TTTACAATTTACATCTGATGTAAGTAAAGAAGCCTTATGCTTTGAAGCTAAATCTCCCAT ATCCGCTCTATTTGTAGCACGTAAATAATCCAGCATTCGATCGTTAAATGGAAAAATTGA TGTTGTAGCACCGATCTCAGCGCCCATATTACAAATTGTAGCCATACCGGTGCATGAAAT CGATTCAACACCGGGACCATAATATTCAACGATAGCTCCAGTTCCACCTTTCACTGTTAG GATTTCAGCTACCTTTAGTATGATATCTTTTGGACTTGTCCAACCAGATAATTTACCTGT TAGATTTACGCCAATTACTAATGGGGCTTTCAACTCCCATGGTAAATTAGCCATTACATC TACAGCATCTGCACCACCAACACCAATACATAAACCACCAAGTCCGCCACCATTAGGTGT ATGACTATCGGTGCCAATGATTAATGCACCAGGAAATGCGTAGTTCTCTAAAACAATTTG GTGAATTATTCCTGATCCAGGCTTCCAAAATCCAATACCATATTTAGCAGATGCAGATGC AAGAAATTCGTAAACTTCCTTGTTGGTATCATTTGCACGATTAAGATCTGTTCCTGCACC ATCTTTAGCCTCAATAAGATGGTCACAGTGGACAGTTGAGGGTACGGCGACACGTGGAAG ACCACTGCTAATAAATTGTAATAGAGCCATCTGTGCTGTAGCATCTTGCATTGCAACACG ATCGGGTCTAAGCATGAGATAGCTTTTACCTCTTTCAATATTTGAAGTTTTTGGATTATC GAGATGAGAATACAGAACTTTCTCGGCAAGTGTTAACGGATGTCCAAGTCGTTTTTTCAC TATATTTAGATTGTGTTCCAGTTTATCATAATCTAGGGTCTTGTCTTCAAATTTACTAAG TGCCACTGAACGACTTATGGGAGAAAATCGAACAAAATTAACCCTGCCTGTATTCTTCAA CAGCAGATTGACGAACGTCATGATAAAATAAACCACGATATTTTCTCTTGTCGAATAGAT CAGGAAAACGAAAGTGTACCGAGACTAGAGCCG



consensusID : consensus_10079#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 253
fasta sequence
                              [TTGCACGAATTTGTTCACTACCAGGTGTTATAAAGAATTGTGATTTAATTTTAACACCTTTATCTAAAGCTTGACGAGCTAAGCTGGCAGCACGTGCCATATCCTCATAAGATGAATTGGTACAGGAACCGATAAGTCCAGCACTGATATGCAGTGGCCAACCTGCTTTGGATGCATGACTGGACAACTAATAAGAATAACAATAATAATAATGTATGTATGCCAGTTAGCAAACATTAAATAAACTGTGTAA]

[+] EMBL CD167579             [TTGCACGAATTTGTTCACTACCAGGTGTTATAAAGAATTGTGATTTAATTTTAACACCTTTATCTAAAGCTTGACGAGCTAAGCTGGCAGCACGTGCCATATCCTCATAAGATGAATTGGTACAGGAACCGATAAGTCCAGCACTGATATGCAGTGGCCAACCTGCTTTGGATGCATGACTGGACAACTAATAAGAATAACAATAATAATAATGTATGTATGCCAGTTAGCAAACATTAAATAAACTGTGTAA]


>consensus_10079#1 TTGCACGAATTTGTTCACTACCAGGTGTTATAAAGAATTGTGATTTAATTTTAACACCTT TATCTAAAGCTTGACGAGCTAAGCTGGCAGCACGTGCCATATCCTCATAAGATGAATTGG TACAGGAACCGATAAGTCCAGCACTGATATGCAGTGGCCAACCTGCTTTGGATGCATGAC TGGACAACTAATAAGAATAACAATAATAATAATGTATGTATGCCAGTTAGCAAACATTAA ATAAACTGTGTAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10079#0      ACCAATACATGGACCACATGCGTTAGCTAATACTACGCCACCAATAGATTGAAATATTTT 60
consensus_10079#1      ------------------------------------------------------------
                                                                                   

consensus_10079#0      TGTGATACCGTCACGTTCAATAGTTGCACGAATTTGTTCACTACCACGTGTTATAAAGAA 120
consensus_10079#1      -----------------------TTGCACGAATTTGTTCACTACCAGGTGTTATAAAGAA 37
                                              *********************** *************

consensus_10079#0      TCGCGATTTAATTTTAACACCTTTATCTAAAGCTTGACGAGCTAAGCTGGCAGCACGTGC 180
consensus_10079#1      TTGTGATTTAATTTTAACACCTTTATCTAAAGCTTGACGAGCTAAGCTGGCAGCACGTGC 97
                       * * ********************************************************

consensus_10079#0      CATATCCTCATAAGATGAATTGGTACAGGAACCGATAAGTCCAGCACTGATATGCAGTGG 240
consensus_10079#1      CATATCCTCATAAGATGAATTGGTACAGGAACCGATAAGTCCAGCACTGATATGCAGTGG 157
                       ************************************************************

consensus_10079#0      CCAACCTGCTTTGGATGCATGACTGGACAATTGTGAAATCGGATGTGCGAGATCTGGTGT 300
consensus_10079#1      CCAACCTGCTTTGGATGCATGACTGGACAACTAATAAGAATAACAATAATAA--TAATGT 215
                       ****************************** *   **     *        *  *  ***

consensus_10079#0      AAACGGACCATTTACATGTGGTTC--TAAAGTATCCAAGTTTATTTCAATTATTTTATCA 358
consensus_10079#1      ATGTATGCCAGTTAGCAAACATTAAATAAACTGTGTAA---------------------- 253
                       *      *** ***       **   **** * *  **                      

consensus_10079#0      TATTTACAATTTACATCTGATGTAAGTAAAGAAGCCTTATGCTTTGAAGCTAAATCTCCC 418
consensus_10079#1      ------------------------------------------------------------
                                                                                   

consensus_10079#0      ATATCCGCTCTATTTGTAGCACGTAAATAATCCAGCATTCGATCGTTAAATGGAAAAATT 478
consensus_10079#1      ------------------------------------------------------------
                                                                                   

consensus_10079#0      GATGTTGTAGCACCGATCTCAGCGCCCATATTACAAATTGTAGCCATACCGGTGCATGAA 538
consensus_10079#1      ------------------------------------------------------------
                                                                                   

consensus_10079#0      ATCGATTCAACACCGGGACCATAATATTCAACGATAGCTCCAGTTCCACCTTTCACTGTT 598
consensus_10079#1      ------------------------------------------------------------
                                                                                   

consensus_10079#0      AGGATTTCAGCTACCTTTAGTATGATATCTTTTGGACTTGTCCAACCAGATAATTTACCT 658
consensus_10079#1      ------------------------------------------------------------
                                                                                   

consensus_10079#0      GTTAGATTTACGCCAATTACTAATGGGGCTTTCAACTCCCATGGTAAATTAGCCATTACA 718
consensus_10079#1      ------------------------------------------------------------
                                                                                   

consensus_10079#0      TCTACAGCATCTGCACCACCAACACCAATACATAAACCACCAAGTCCGCCACCATTAGGT 778
consensus_10079#1      ------------------------------------------------------------
                                                                                   

consensus_10079#0      GTATGACTATCGGTGCCAATGATTAATGCACCAGGAAATGCGTAGTTCTCTAAAACAATT 838
consensus_10079#1      ------------------------------------------------------------
                                                                                   

consensus_10079#0      TGGTGAATTATTCCTGATCCAGGCTTCCAAAATCCAATACCATATTTAGCAGATGCAGAT 898
consensus_10079#1      ------------------------------------------------------------
                                                                                   

consensus_10079#0      GCAAGAAATTCGTAAACTTCCTTGTTGGTATCATTTGCACGATTAAGATCTGTTCCTGCA 958
consensus_10079#1      ------------------------------------------------------------
                                                                                   

consensus_10079#0      CCATCTTTAGCCTCAATAAGATGGTCACAGTGGACAGTTGAGGGTACGGCGACACGTGGA 1018
consensus_10079#1      ------------------------------------------------------------
                                                                                   

consensus_10079#0      AGACCACTGCTAATAAATTGTAATAGAGCCATCTGTGCTGTAGCATCTTGCATTGCAACA 1078
consensus_10079#1      ------------------------------------------------------------
                                                                                   

consensus_10079#0      CGATCGGGTCTAAGCATGAGATAGCTTTTACCTCTTTCAATATTTGAAGTTTTTGGATTA 1138
consensus_10079#1      ------------------------------------------------------------
                                                                                   

consensus_10079#0      TCGAGATGAGAATACAGAACTTTCTCGGCAAGTGTTAACGGATGTCCAAGTCGTTTTTTC 1198
consensus_10079#1      ------------------------------------------------------------
                                                                                   

consensus_10079#0      ACTATATTTAGATTGTGTTCCAGTTTATCATAATCTAGGGTCTTGTCTTCAAATTTACTA 1258
consensus_10079#1      ------------------------------------------------------------
                                                                                   

consensus_10079#0      AGTGCCACTGAACGACTTATGGGAGAAAATCGAACAAAATTAACCCTGCCTGTATTCTTC 1318
consensus_10079#1      ------------------------------------------------------------
                                                                                   

consensus_10079#0      AACAGCAGATTGACGAACGTCATGATAAAATAAACCACGATATTTTCTCTTGTCGAATAG 1378
consensus_10079#1      ------------------------------------------------------------
                                                                                   

consensus_10079#0      ATCAGGAAAACGAAAGTGTACCGAGACTAGAGCCG 1413
consensus_10079#1      -----------------------------------
                                                          




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)