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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10085#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 727 fasta sequence
[TGGAAGGACATCAAGTTTTTCGCTTCATTGGATTCACCGGGTTTTAAGTTTTGGACTTGTGTATTCATGATGTCTGCTTTTGGTGATCGATTTGATTGGTATCAGTCAGAGGATAATGTTTGGATAGATTGTTTCAGAAAAAAGATAGTACCAACTGATATTCGGGTAGAAATAGAAAGACGAAAGGTCTCTTTGTACCTGACCATTCCCACCGGTGATGAGTTGCTCAAAAAATTTCAGTTGCTTCATGAAGTTGTGCCAGAGGATTCATCATACCGTGTCACCGCCACGAAAATCGAAATCAAGTTAAAGAAAGCGGATAAAGTTTGCTGGAGTCATCTGGAATCTCAAGATTGTGTTACTGGTTCAGGAATTCAGGTGTCACAAGATGTCACCAAAATTGTTCACTCCTATCCTTCCTCAAGCAAATCTACTCATGATTGGAATAAGATCGATAAAGAAGCAGCTGAAATAGAGGGAGAAGAAGACCCTCTAAACAAGTTGTTCAAAAATATTTACGAAAATGCCTCAGATGAAACTAGAAGGGCAATGATCAAAAGTTTTACGGAATCAGCTGGTACAGTCCTAAGTACCAATTGGAGTGAAGTTGGAGCAGGTAAAGTTGAAATACGACCTCCAGATGGAATGGAATATAAGAAGTATGAAATATAATGTTTGTTAAC-AAAACTACCTTATGCTTACGATTTTTTCAACGG-AATAAAGTATT]
[+] EMBL CD178385 [TGGAAGGACATCAAGTTTTTCGCTTCATTGGATTCACCGGGTTTTAAGTTTTGGACTTGTGTATTCATGATGTCTGCTTTTGGTGATCGATTTGATTGGTATCAGTCAGAGGATAATGTTTGGATAGATTGTTTCAGAAAAAAGATAGTACCAACTGATATTTGGGTAGAAATAGAAAGACGAAAGGTCTCTTTGTACCTGACCATTCCCACCGGTGATGAGTTGCTCAAAAAATTTCAGTTGCTTCATGAAGTTGTGCCAGAGGAGTCATCATACCGTGTCACCGCCACGAAAATCGAAATCAAGTTAAAGAAAGCGGATAAAGTTTGCTGGAGTCATCTGGAATCTCAAGATTGTGTTACTGGTTCAGGAATTCAGGTGTCACAAGATGTCACCAAAATTGT ]
[+] EMBL CD128363 [ ATCAAGTTTTTCGCTTCATTGGATTCACCGGGTTTTAAGTTTTGGACTTGTGTATTCATGATGTCTGCTTTTGGTGATCGATTTGATTGGTATCAGTCAGAGGATAATGTTTGGATAGATTGTTTCAGAAAAAAGATAGTACCAACTGATATTCGGGTAGAAATAGAAAGACGAAAGGTCTCTTTGTACCTGACCATTCCCACCGGTGATGAGTTGCTCAAAAAATTTCAGTTGCTTCATGAAGTTGTGCCAGAGGAGTCATCATACCGTGTCACCGCCACGAAAATCGAAATCAAGTTAAAGAAAGCGGATAAAGTTTGCTGGAGTCATCTGGAATCTCAAGATTGTGTTACTGGTTCAGGAATTCAGGTGTCACAAGATGTCACCAAAATTGTTCACTCCTATCCTTCCTCAAGCAAATCTACTCATGATTGGAATAAGATCGATAAAGAAGCAGCTGAAATAGAGGGAGAAGA ]
[-] EMBL CD201535 [ TTTTCGCTTCATTGGATTCACCGGGTTTTAAGTTTTGGACTTGTGTATTCATGATGTCTGCTTCTGGTGATCGATTTGATTGGTATCAGTCAGAGGATAATGTTTGGATAGATTGTTTCAGAAAAAAGATAGTACCAACTGATATTCGGGTAGAAATAGAAAGACGAAAGGTCTCTTTGTACCTGACCATTCCCACCGGTGATGAGTTGCTCAAAAAATTTCAGTTGCTTCATGAAGTTGTGCCAGAGGATTCATCATACCGTGTCACCGCCACGAAAATCGAAATCAAGTTAAAGAAAGCGGATAAAGTTTGCTGGAGTCATCTGGAATCTCAAGATTGTGTTACTGGTTCAGGAATTCAGGTGTCACAAGATGTCACCAAAATTGTTCACTCCTATCCTTCCTCAAGCAAATCTACTCATGATTGGAATAAGATCGATAAAGAAGCAGCTGAAATAGAGGGAGAAGAAGACCCTCT AACAAGTTGTTCAAAAATATTTAC ]
[+] EMBL CD079029 [ CGATTTGATTGGTATCAGTCAGAGGATAATGTTTGGATAGATTGTTTCAGAAAAAAGATAGTACCAACTGATATTCGGGTAGAAATAGAAAGACGAAAGGTCTCTTTGTACCTGACCATTCCCACCGGTGATGAGTTGCTCAAAAAATTTCAGTTGCTTCATGAAGTTGTGCCAGAGGATTCATCATACCGTGTCACCGCCACGAAAATCGAAATCAAGTTAAAGAAAGCGGATAAAGTTTGCTGGAGTCATCTGGAATCTCAAGATTGTGTTACTGGTTCAGGAATTCAGGTGTCACAAGATGTCACCAAAATTGTTCACTCCTATCCTTCCTCAAGCAAATCTACTCATGATTGGAATAAGATCGATAAAGAAGCAGCTGAAATAGAGGGAGAAGAAGACCCTCTAAACAAGTTGTTCAAAAATATTTACGAAAATGCCTCAGATGAAACTAGAAGGGCAATGATCAAAAGTTTTACGGAATCAGCTGGTACAGTCCTAAGTACCAATTGGAGTGAAGTTGGAGCAGGTAAAGTTGAAATACGACCTCCAGATGGAATGGAATATAAGAAGTATGAAATATAATGTTTGTTAAC AAAACTACCTTATGCTTACGATTTTTTCAACGG AATAAAGTAT ]
[-] EMBL CD073480 [ CGGGTAGAAATAGAAAGACGAAAGGTCTCTTTGTACCTGACCATTCCCACCGGTGATGAGTTGCTCAAAAAATTTCAGTTGCTTCATGAAGTTGTGCCAGAGGATTCATCATACCGTGTCACCGCCACGAAAATCGAAATCAAGTTAAAGAAAGCGGATAAAGTTTGCTGGAGTCATCTGGAATCTCAAGATTGTGTTACTGGTTCAGGAATTCAGGTGTCACAAGATGTCACCAAAATTGTTCACTCCTATCCTTCCTCAAGCAAATCTACTCATGATTGGAATAAGATCGATAAAGAAGCAGCTGAAATAGAGGGAGAAGAAGACCCTTTAAACAAGTTGTTCAAAAATATTTACGAAAATGCCTCAGATGAAACTAGAAGGGCAATGATCAAAAGTTTTACGGAATCAGCTGGTACAGTCCTAAGTACCAATTGGAGTGAAGTTGGAGCAGGTAAAGTTGAAATACGACCTCCAGATGGAATGGAATATAAGAAGTATGAAATATAATGTTTGTTAACAAAAACTACCTTATGCTTACGATTTTTTCAACGGAAATAAAGTATT]
consensusID : consensus_10085#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 406 fasta sequence
[AGGCATAAACACTACTCATGTTGTTCATTGTCCCCTTTTTGTTTTCAGAGGTGTCACAAGATGTCCCACCAAAATTGTTCCACTCCTTATCCTTCCTCAAGCAAATCTACTCATGATTGGAATAAGATCGATAAAGAAGCAGCTGAAATAGAGGGAGAAGAAGACCCTCTAAACAAGTTGTTCAAAAATATTTACGAAAATGCCTCAGATGAAACTAGAAGGGCAATGATCAAAAGTTTTACGGAATCAGCTGGTAACAGTCCTAAGTACCAAAAAGGAGTGAAGTTGGAGCAGGTAAAGTTGAAATACGACCTCCAGATGGAATGGAATATAAGAAGTATGAAATATAATGTTTGTTAACAAAAACTACCTTATGCTTACGATTTTTTCAACGGAAATAAAGTAT]
[-] EMBL AI740244 [AGGCATAAACACTACTCATGTTGTTCATTGTCCCCTTTTTGTTTTCAGAGGTGTCACAAGATGTCCCACCAAAATTGTTCCACTCCTTATCCTTCCTCAAGCAAATCTACTCATGATTGGAATAAGATCGATAAAGAAGCAGCTGAAATAGAGGGAGAAGAAGACCCTCTAAACAAGTTGTTCAAAAATATTTACGAAAATGCCTCAGATGAAACTAGAAGGGCAATGATCAAAAGTTTTACGGAATCAGCTGGTAACAGTCCTAAGTACCAAAAAGGAGTGAAGTTGGAGCAGGTAAAGTTGAAATACGACCTCCAGATGGAATGGAATATAAGAAGTATGAAATATAATGTTTGTTAACAAAAACTACCTTATGCTTACGATTTTTTCAACGGAAATAAAGTAT]
consensusID : consensus_10085#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 316 fasta sequence
[CGACGGCTCACGGAACTTCGACGCT---TGTTTTCATAGTGGTCAAACCTTTAGACCTAATGCCGTCTCCGGGTGGCCGATATGCTTG-GTTTCAGTCGGATGGTAATATTTGCATAAATTACTTCAGAAAAAATATGGCATTAACTGATGTTCGAGTAGAAATAGAAAGACGAAAGGTCTCTTTGTACCTGACCATTCCCACCGGTGATGAGTTGCTCAAAAAATTTCAGTTGCTTCATGAAGTTGTGCCAGAGGATTCATCATACCGTGTCACCGCCACGAAAATCGAAATCAAGTTAAAGGCGGATAAGTTCCGTGA]
[+] EMBL CD167443 [CGACGGCTCACGGAACTTCGACGCTTCGTGTTTTCATAGTGGTCAAACCTTTAGACCTAATGCCGTCTCCGGGTGGCCGATATGCTTG GTTTCAGTCGGATGGTAATATTTGCATAAATTACTTCAGAAAAAATATGGCATTAACTGATGTTCGAGTAGAAATAGAAAGACGAAAGGTCTCTTTGTACCTGACCATTCCCACCGGTGATGAGTTGCTCAAAAAATTTCAGTTGCTTCATGAAGTTGTGCCAGAGGAGTCATCATACCGTGTCACCGCCACGAAAATCGAAATCAAGTTAAA ]
[+] EMBL CD167337 [ TCACGGAACTTCGACGCT CGTTGTCATAGTGGTCAAACCTTTAGACCTAATGCCGTCTCCGGGTGGCCGATATGCCTG GTTTCAGTCGGATGGT ATATTTGCAT AATTACTTCAGAAAAAATATGGCATTAACTGATGTTCGAGTAGAAATAGAAAGACGAAAGGTCTCTTTGTACCTGACCATTCCCACCGGTGATGAGTTGCTCAAAAAATTTCAGTTGCTTCATGAAGTTGTGCCAGAGGATTCATCATACCGTGTCACCGCCACGAAAATCGAAATCAAGTTAAA ]
[+] EMBL SMAA28824 [ acgcttCGTT TGTTTTCATAGTGGTCAAACCTTTAGA CTAATGCCGTCTCCGGGTGGCCGATATGCTAGAGTTTCAGTCGGATGGTAATATTTGCATAAATTACTTCAGAAAAAATATGGCATTAACTGATGTTCGAGTAG AATAGAAAGACGAAAGGTCTCTTTGTACCTGAACATTCCCACCGGTGATGAGTTGCTCAAAAAAT ]
[-] EMBL CD167433 [ T TGTTTTCATAGTGGTCAAACCTTTAGACCTAATGCCGTCTCCGGGTGGCCGATATGCTTG GTTTCAGTCGGATGGTAATATTTGCATAAATTACTTCAGAAAAAATATGGCATTAACTGATGTTCGAGTAGAAATAGAAAGACGAAAGGTCTCTTTGTACCTGACCATTCCCACCGGTGATGAGTTGCTCAAAAAATTTCAGTTGCTTCATGAAGTTGTGCCAGAGGATTCATCATACCGTGTCACCGCCACGAAAATCGAAATCAAGTTAAAG ]
[-] EMBL CD128457 [ T TGTTCTCATAGTGGTCAAACCTTTAGACCTAATGCCGTCTCCGGGTGGCCGATATGCTTG GTTTCAGTCGGATGGTAATATTTGCATAAGTTACTTCAGAAAAAGTATGGCATTAACTGATGTTCGAGTAGAAATAGAAAGACGAAAGGTCTCTTTGTACCTGACCATTCCCACCGGTGATGAGTTGCTCAAAAAATTTCAGTTGCTTCATGAAGTTGTGCCAGAGGAGTCATCATACCGTGTCACCGCCACGAAAATCGAAATCAAGTTAGAAGCGGATAAGTTCCGTGA]
[+] EMBL CD167297 [ GTGTTCATAGTGGTC AACCTTTANACCTAATGCCGTCTCCGGGTGGCCGATATGCTTG GTTTCAGTCGGATGGTAATATTTGCATAAATTACTTCAGAAAAAATATGGCATTAACTGATGTTCGAGTAGAAATAGAAAGACGAAAGGTCTCTTTGTACCTGACCATTCCCACCGGTGATGAGTTGCTCAAAAAATTTCAGTTGCTTCATGAAGTTGTGCCAGAGGATTCATCATACCGTGTCACCGCCACGAAAATCGAAATCAAGTTAAAG ]
[+] EMBL CD167313 [ ATAGATAGACGAAAGGTCTCTTTGTACCTGACCATTCCCACCGGTGATGAGTTGCTCAAAGAATTTCAGTTGCTTCATGAAGTTGTGCCAGAGGATTCATCATACCGTGTCACCGCCACGAAAATCGAAATCAAGTTAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10085#0 TGGAAGGACATCAAGTTTTTCGCTTCATTGGATTCACCGGGTTTTAAGTTTTGGACTTGT 60
consensus_10085#1 ------------------------------------------------------------
consensus_10085#2 ------------------------------------------------------------
consensus_10085#0 GTATTCATGATGTCTGCTTTTGGTGATCGATTTGATTGGTATCAGTCAGAGGATAATGTT 120
consensus_10085#1 ------------------------------------------------------------
consensus_10085#2 ------------------------------------------------------------
consensus_10085#0 TGGATAGATTGTTTCAGAAAAAAGATAGTACCAACTGATATTCGGGTAGAAATAGAAAGA 180
consensus_10085#1 ------------------------------------------------------------
consensus_10085#2 ------------------------------------------------------------
consensus_10085#0 CGAAAGGTCTCTTTGTACCTGACCATTCCCACCGGTGATGAGTTGCTCAAAAAATTTCAG 240
consensus_10085#1 ------------------------------------------------------------
consensus_10085#2 ------------------------------------------------------------
consensus_10085#0 TTGCTTCATGAAGTTGTGCCAGAGGATTCATCATACCGTGTCACCGCCACGAAAATCGAA 300
consensus_10085#1 ------------------------------------------------------------
consensus_10085#2 ------------------------------------------------------------
consensus_10085#0 ATCAAGTTAAAGAAAGCGGATAAAGTTTGCTGGAGTCATCTGGAATCTCAAGATTGTGTT 360
consensus_10085#1 ---------------AGGCATAAACACTACTCATGTTGTTCATTGTCCCCT--TTTTGTT 43
consensus_10085#2 ------------------------------------------------------------
consensus_10085#0 ACTGGTTCAGGAATTCAGGTGTCACAAGATGTC--ACCAAAATTGTTC-ACTCCT-ATCC 416
consensus_10085#1 -----TTCAG------AGGTGTCACAAGATGTCCCACCAAAATTGTTCCACTCCTTATCC 92
consensus_10085#2 --------------------------CGACGGCTCACGGAACTT---CGACGCTTGTTTT 31
** * * ** ** ** * ** * * *
consensus_10085#0 TTCCTCAAGCAAATCTACTCATGATTGGAATAAGATC--GATAAAGAAGCAGCTGAAATA 474
consensus_10085#1 TTCCTCAAGCAAATCTACTCATGATTGGAATAAGATC--GATAAAGAAGCAGCTGAAATA 150
consensus_10085#2 CATAGTGGTCAAACCT--TTAGACCTAATGCCGTCTCCGGGTGGCCGATATGCTTGGTTT 89
**** ** * * * ** * * * *** *
consensus_10085#0 GAGGGAGAAGAAGACCCTCTAAACAAGTTGTTCAAAAATATTTACGAAAATGCCTCAGAT 534
consensus_10085#1 GAGGGAGAAGAAGACCCTCTAAACAAGTTGTTCAAAAATATTTACGAAAATGCCTCAGAT 210
consensus_10085#2 CAGTCGGATGGTAATATT-TGCATAAATTACTTCAGAAAAAATATGGCATTAACTGATGT 148
** ** * * * * * ** ** * * ** * ** * * * ** * *
consensus_10085#0 GAAACTAGAAGGGCAATGATCAAAAGTTTTACGGAATCAGCTGGT----A-CAGTCCTAA 589
consensus_10085#1 GAAACTAGAAGGGCAATGATCAAAAGTTTTACGGAATCAGCTGGT----AACAGTCCTAA 266
consensus_10085#2 TCGAGTAGAAATAGAAAGACGAAAGGTCTCTTTGTACCTGACCATTCCCACCGGTGATGA 208
* ***** ** ** *** ** * * * * * * * * ** * *
consensus_10085#0 GTACCAATT-GGAGTGAAGTTGGAGCAGGTAAAGTTGAAATACGACCTCCAGATGGAATG 648
consensus_10085#1 GTACCAAAAAGGAGTGAAGTTGGAGCAGGTAAAGTTGAAATACGACCTCCAGATGGAATG 326
consensus_10085#2 GTTGCTCAAAAAATTTCAGTTGCTTCA--TGAAGTTGTGCCAGAGGATTCATC----ATA 262
** * * * ***** ** * ****** * * ** **
consensus_10085#0 GAATATAAGAAGTATGAAATATAATGTTT-GTTAACAAAA-CTACCTTATGCTTACGATT 706
consensus_10085#1 GAATATAAGAAGTATGAAATATAATGTTT-GTTAACAAAAACTACCTTATGCTTACGATT 385
consensus_10085#2 CCGTGTCACCGCCACGAAAATCGAAATCAAGTTAAAGGCGGATAAGTTCCGTGA------ 316
* * * * **** * * ***** ** ** *
consensus_10085#0 TTTTCAACGGAA-TAAAGTATT 727
consensus_10085#1 TTTTCAACGGAAATAAAGTAT- 406
consensus_10085#2 ----------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||