These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10088#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 602 fasta sequence [GGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTA-GATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAA] [+] EMBL CD116111 [GGACACTGTAGAGACAAGCAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTA GATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACGAGTAACTAGATGTCTACTGCAGTCGAAAGAAC ] [+] EMBL CD116203 [GGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGGGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGGAGAGTGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTACAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAG ] [-] EMBL CD116136 [ GACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAGTGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTA GATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACA ] [-] EMBL CD115967 [ CGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACNCTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTA GATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAA] consensusID : consensus_10088#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 296 fasta sequence [CAATCCACGAGAAGGAGTGTGTGTCAGAGGACAGTGTTTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCTACACCTGATGTCAAGTTTGTGCTTGACCAGACAGACGACCAGTCAGCTAGCTACACAGTCCACTAACTACACAACCAGTTCTCCATCTTGCTCTTCAC-ACATACAC-TTTTCAACCACTCACATGTTCAATCATAACTT-CCTTCTCTCATAATAAATGTGATT] [+] EMBL SMAA40561 [CAATCCACGAGAAGGAGTGTGTGTCAGAGGACAGTGTTTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGNTACTGTAGAGACAAGTAACTAGATGTCTACTGCTACACCTNATGTCAAGTTTGTGCTTGACCAGACAGACGACCAGTCAGCTAGCTACACAGTCCACTAACTACACAACCATTTTTTNATCTTGCTCTTCAC ACATNNAC TTTTCAACCAC ] [-] EMBL CD095604 [ TCCACGAGAAGGAGTGTGTGTCAGAGGACAGTGTTTGCAGTCGAAAGAACAATGTGTAGGTAATGTGGATTGCTGCAGTGGACACTGTTTGAAAGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCTACACCTGATGTCAAGTTTGTGCTTGACCAGACAGACGACCAGTCAGCTAGCTACACAGTCCACTAACTACAC ] [-] EMBL SMAA40592 [ AGAGGACAGTGTTTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCTACACCTGATGTCAAGTTTGTGCTTGACCAGACAGACGACCAGTCAGCTAGCTACACAGTCCACTAACTAGACAACCAGTTCTCCATCTTGCTCTTCAC ACATACAC TTGTCAACCACTCACATGGTCAATCATAACTT CCTTCTCTCATAATAAATGTGATT] [-] EMBL CD095605 [ ACAGTGTTTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCTACACCTGATGTCAAGTTTGTGCTTGACCAGACAGGCGACCAGTCAGCTAGCTACACAGTCCACTAACTACAC ] [+] EMBL AW587562 [ TGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCTACACCTGATGTCAAGTTTGTGCTTGACCAGACAGACGACCAGTCAGCTAGCTACACAGTCCACTAACTACACAACCAGTTCTCCATCTTGCTCTTCAC ACATACAC TTTTCAACCACTCACATGTTCAATCATAACTTCCCTTCTCTCATAAAAAATGTGAT ] [+] EMBL CD116006 [ GGACACTGTAGAGACAAGTAACTAGATGTCTACTGCTACACCTGATGTCAAGTTTGTGCTTGACCAGACAGACGACCAGTCAGCTAGCTACACAGTCCACTAACTACACAACCAGTTCTCCATCTTCCTCTTCAC ACATACAC TTTTC ] [+] EMBL CD116145 [ GGACACTGTAGAGACAAGTAACTAGATGTCTACTGCTACACCTGATGTCAAGTTTGTGCTTGACCAGACAGACGACCAGTCAGCTAGCTACACAGTCCACTAACTACACAACCAGCTCTCCATCTTGCTCTTCAC ACATACAC TTTTC ] [+] EMBL AI764935 [ TCAAGTTTGTGCTCGACCAGACAGACGACCAGTCAGCTAGCTACACAGTCCACTAACTACACAACCAGTTCTCCATCTTGCTCTTCACAACATACACTTTTTCAACCACTCACATGTTCAATCATAACTT CCTTCTCTCATAATAAATGTGAT ] consensusID : consensus_10088#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 170 fasta sequence [AGTCTCGAGTTTTTTAAAAAGTACCACTCGGTTCTTTTTTTTTGGTTTAATGAATCACATTTATTATGAGAGAAGGAAGTTATGATTCGACATGTGAGTGGTTGAAAAGTATATATCTTAAAGACCAAGATGGAGACCTGGTTGTGTAGTTAGTGGACTTATAACTCACT] [+] EMBL AI381050 [AGTCTCGAGTTTTTTAAAAAGTACCACTCGGTTCTTTTTTTTTGGTTTAATGAATCACATTTATTATGAGAGAAGGAAGTTATGATTCGACATGTGAGTGGTTGAAAAGTATATATCTTAAAGACCAAGATGGAGACCTGGTTGTGTAGTTAGTGGACTTATAACTCACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10088#0 GGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATA 60 consensus_10088#1 ------------------------------------------------------------ consensus_10088#2 ------------------------------------------------------------ consensus_10088#0 ATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATG 120 consensus_10088#1 ------------------------------------------------------------ consensus_10088#2 ------------------------------------------------------------ consensus_10088#0 TCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTT 180 consensus_10088#1 ------------------------------------------------------------ consensus_10088#2 ------------------------------------------------------------ consensus_10088#0 GAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTA 240 consensus_10088#1 ------------------------------------------------------------ consensus_10088#2 ------------------------------------------------------------ consensus_10088#0 GATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAG-ACAAGTAACT 299 consensus_10088#1 --------------------------------CAATCCACGAGAAGGAGTGTGTGTCAGA 28 consensus_10088#2 ------------------------------------------------------------ consensus_10088#0 AGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACAC 359 consensus_10088#1 GGACAGTGTTTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACAC 88 consensus_10088#2 ---AGTCTCGAGTTTTTTAAAAAGTACCACTCGGTTCTTTTTTTTTGGTTTAATGAATCA 57 * * *** * * * * * * *** * * ** * consensus_10088#0 TGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAAT 419 consensus_10088#1 TGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCTAC-------ACCTG 141 consensus_10088#2 CATTTATTATGAGA--GAAGGAAGTTATGATTCGACATGTGA-GTGGT--------TGAA 106 *** ** * * ** * * * * ** * * * consensus_10088#0 GTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGT 479 consensus_10088#1 ATGTCAAGTTTGTGCTTGACCAGACAGACGACCAGTCAGCTAG---CTACACAGTCCACT 198 consensus_10088#2 AAGTATATATCTTAAAGACCAAGATGGAGACCTGGTTGTGTAGTTAGTGGACTTATAACT 166 ** * * * * * * * * * * * * * consensus_10088#0 AACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGG 539 consensus_10088#1 AACTACACAACCAGTTC--TCCATCTTGCTCTTCACACATAC-----ACTTTTCAACCAC 251 consensus_10088#2 CACT-------------------------------------------------------- 170 *** consensus_10088#0 ACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAA 599 consensus_10088#1 TCACATGTTCAATCATAACTTCCTTCTCTCATAA-TAAATGTG-ATT------------- 296 consensus_10088#2 ------------------------------------------------------------ consensus_10088#0 CAA 602 consensus_10088#1 --- consensus_10088#2 --- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||