cluster # 10088

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Schistosoma mansoni
cluster # 10088 cluster # 10088 Sequences # 13 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10088#0 length = 602 sequences # 4

consensus_10088#1 length = 296 sequences # 8
consensus_10088#2 length = 170 sequences # 1

consensusID : consensus_10088#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 602
fasta sequence

                              [GGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTA-GATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAA]

[+] EMBL CD116111             [GGACACTGTAGAGACAAGCAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTA GATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACGAGTAACTAGATGTCTACTGCAGTCGAAAGAAC  ]
[+] EMBL CD116203             [GGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGGGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGGAGAGTGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTACAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAG                                                                  ]
[-] EMBL CD116136             [ GACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAGTGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTA GATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACA                                  ]
[-] EMBL CD115967             [                                       CGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACNCTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTA GATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAA]




>consensus_10088#0
GGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATA
ATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATG
TCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTT
GAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTA
GATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTA
GATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACT
GTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATG
TGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTA
ACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGA
CACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAAC
AA

consensusID : consensus_10088#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 296
fasta sequence

                              [CAATCCACGAGAAGGAGTGTGTGTCAGAGGACAGTGTTTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCTACACCTGATGTCAAGTTTGTGCTTGACCAGACAGACGACCAGTCAGCTAGCTACACAGTCCACTAACTACACAACCAGTTCTCCATCTTGCTCTTCAC-ACATACAC-TTTTCAACCACTCACATGTTCAATCATAACTT-CCTTCTCTCATAATAAATGTGATT]

[+] EMBL SMAA40561            [CAATCCACGAGAAGGAGTGTGTGTCAGAGGACAGTGTTTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGNTACTGTAGAGACAAGTAACTAGATGTCTACTGCTACACCTNATGTCAAGTTTGTGCTTGACCAGACAGACGACCAGTCAGCTAGCTACACAGTCCACTAACTACACAACCATTTTTTNATCTTGCTCTTCAC ACATNNAC TTTTCAACCAC                                              ]
[-] EMBL CD095604             [   TCCACGAGAAGGAGTGTGTGTCAGAGGACAGTGTTTGCAGTCGAAAGAACAATGTGTAGGTAATGTGGATTGCTGCAGTGGACACTGTTTGAAAGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCTACACCTGATGTCAAGTTTGTGCTTGACCAGACAGACGACCAGTCAGCTAGCTACACAGTCCACTAACTACAC                                                                                             ]
[-] EMBL SMAA40592            [                         AGAGGACAGTGTTTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCTACACCTGATGTCAAGTTTGTGCTTGACCAGACAGACGACCAGTCAGCTAGCTACACAGTCCACTAACTAGACAACCAGTTCTCCATCTTGCTCTTCAC ACATACAC TTGTCAACCACTCACATGGTCAATCATAACTT CCTTCTCTCATAATAAATGTGATT]
[-] EMBL CD095605             [                              ACAGTGTTTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCTACACCTGATGTCAAGTTTGTGCTTGACCAGACAGGCGACCAGTCAGCTAGCTACACAGTCCACTAACTACAC                                                                                             ]
[+] EMBL AW587562             [                                                                                                TGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCTACACCTGATGTCAAGTTTGTGCTTGACCAGACAGACGACCAGTCAGCTAGCTACACAGTCCACTAACTACACAACCAGTTCTCCATCTTGCTCTTCAC ACATACAC TTTTCAACCACTCACATGTTCAATCATAACTTCCCTTCTCTCATAAAAAATGTGAT ]
[+] EMBL CD116006             [                                                                                                 GGACACTGTAGAGACAAGTAACTAGATGTCTACTGCTACACCTGATGTCAAGTTTGTGCTTGACCAGACAGACGACCAGTCAGCTAGCTACACAGTCCACTAACTACACAACCAGTTCTCCATCTTCCTCTTCAC ACATACAC TTTTC                                                    ]
[+] EMBL CD116145             [                                                                                                 GGACACTGTAGAGACAAGTAACTAGATGTCTACTGCTACACCTGATGTCAAGTTTGTGCTTGACCAGACAGACGACCAGTCAGCTAGCTACACAGTCCACTAACTACACAACCAGCTCTCCATCTTGCTCTTCAC ACATACAC TTTTC                                                    ]
[+] EMBL AI764935             [                                                                                                                                                TCAAGTTTGTGCTCGACCAGACAGACGACCAGTCAGCTAGCTACACAGTCCACTAACTACACAACCAGTTCTCCATCTTGCTCTTCACAACATACACTTTTTCAACCACTCACATGTTCAATCATAACTT CCTTCTCTCATAATAAATGTGAT ]




>consensus_10088#1
CAATCCACGAGAAGGAGTGTGTGTCAGAGGACAGTGTTTGCAGTCGAAAGAACAATGTGT
AGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACT
AGATGTCTACTGCTACACCTGATGTCAAGTTTGTGCTTGACCAGACAGACGACCAGTCAG
CTAGCTACACAGTCCACTAACTACACAACCAGTTCTCCATCTTGCTCTTCACACATACAC
TTTTCAACCACTCACATGTTCAATCATAACTTCCTTCTCTCATAATAAATGTGATT

consensusID : consensus_10088#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 170
fasta sequence

                              [AGTCTCGAGTTTTTTAAAAAGTACCACTCGGTTCTTTTTTTTTGGTTTAATGAATCACATTTATTATGAGAGAAGGAAGTTATGATTCGACATGTGAGTGGTTGAAAAGTATATATCTTAAAGACCAAGATGGAGACCTGGTTGTGTAGTTAGTGGACTTATAACTCACT]

[+] EMBL AI381050             [AGTCTCGAGTTTTTTAAAAAGTACCACTCGGTTCTTTTTTTTTGGTTTAATGAATCACATTTATTATGAGAGAAGGAAGTTATGATTCGACATGTGAGTGGTTGAAAAGTATATATCTTAAAGACCAAGATGGAGACCTGGTTGTGTAGTTAGTGGACTTATAACTCACT]




>consensus_10088#2
AGTCTCGAGTTTTTTAAAAAGTACCACTCGGTTCTTTTTTTTTGGTTTAATGAATCACAT
TTATTATGAGAGAAGGAAGTTATGATTCGACATGTGAGTGGTTGAAAAGTATATATCTTA
AAGACCAAGATGGAGACCTGGTTGTGTAGTTAGTGGACTTATAACTCACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10088#0      GGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATA 60
consensus_10088#1      ------------------------------------------------------------
consensus_10088#2      ------------------------------------------------------------
                                                                                   

consensus_10088#0      ATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATG 120
consensus_10088#1      ------------------------------------------------------------
consensus_10088#2      ------------------------------------------------------------
                                                                                   

consensus_10088#0      TCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTT 180
consensus_10088#1      ------------------------------------------------------------
consensus_10088#2      ------------------------------------------------------------
                                                                                   

consensus_10088#0      GAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTA 240
consensus_10088#1      ------------------------------------------------------------
consensus_10088#2      ------------------------------------------------------------
                                                                                   

consensus_10088#0      GATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAG-ACAAGTAACT 299
consensus_10088#1      --------------------------------CAATCCACGAGAAGGAGTGTGTGTCAGA 28
consensus_10088#2      ------------------------------------------------------------
                                                                                   

consensus_10088#0      AGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACAC 359
consensus_10088#1      GGACAGTGTTTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGGACAC 88
consensus_10088#2      ---AGTCTCGAGTTTTTTAAAAAGTACCACTCGGTTCTTTTTTTTTGGTTTAATGAATCA 57
                                  *   *  *** *  *       * *  * *   *** *  * ** *   

consensus_10088#0      TGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAACAAT 419
consensus_10088#1      TGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCTAC-------ACCTG 141
consensus_10088#2      CATTTATTATGAGA--GAAGGAAGTTATGATTCGACATGTGA-GTGGT--------TGAA 106
                         ***     ** *  * **  *    * * * **  * *   *                

consensus_10088#0      GTGTAGATAATGTGGATTGCTGCAGTGGACACTGTTTGAATGGACACTGTAGAGACAAGT 479
consensus_10088#1      ATGTCAAGTTTGTGCTTGACCAGACAGACGACCAGTCAGCTAG---CTACACAGTCCACT 198
consensus_10088#2      AAGTATATATCTTAAAGACCAAGATGGAGACCTGGTTGTGTAGTTAGTGGACTTATAACT 166
                         **  *     *      *   *  *    *   *    * *    *  *      * *

consensus_10088#0      AACTAGATGTCTACTGCAGTCGAAAGAACAATGTGTAGATAATGTGGATTGCTGCAGTGG 539
consensus_10088#1      AACTACACAACCAGTTC--TCCATCTTGCTCTTCACACATAC-----ACTTTTCAACCAC 251
consensus_10088#2      CACT-------------------------------------------------------- 170
                        ***                                                        

consensus_10088#0      ACACTGTTTGAATGGACACTGTAGAGACAAGTAACTAGATGTCTACTGCAGTCGAAAGAA 599
consensus_10088#1      TCACATGTTCAATCATAACTTCCTTCTCTCATAA-TAAATGTG-ATT------------- 296
consensus_10088#2      ------------------------------------------------------------
                                                                                   

consensus_10088#0      CAA 602
consensus_10088#1      ---
consensus_10088#2      ---