These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10093#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 662 fasta sequence [ATCGGCACGAGGCTGATGAGCTTTTTACCACCTGGTGCAGTAGACATCACATCTGAATTACACTTCACAAAGACTAGACGTATGCCCAATATAACTCGTCCAGACCAACTACTTATTAAGGTTAAAGCAGCATCGTTGAATCCTGTCGATTCTTTGCTTGTCTATGGTTATGGTTCTTCTAGCTTTCATTCATTACGTCGCTTTACATCAAAATATGGTTGTTTTGGCTTACCTGATGCCACGACAGCAGAAAATGCTGACTTTCCTTTTACACCTGGTCGTGATTTTTCTGGTCAAATAGTTGACATCGGTTCAAAAGTTGCTTTATCCAACCTAACTAAGGGAAATAAACTTATTATTGGTACAAATGTGGCCGGTGCTACATGGCCTTTTCTCAGTTCTACTGGATCTGGTTCATTAGCCGAATATATTGTCTGTCCAGCCGATTATGTCGCTCCATTACCTAGTAATGTTTCCTTCATATCTGCAGCTGCATTAGGATATGCTGGTTTAACTGCATGGTCAGCTTTAGTTGATGCTGGTGGAATCAATCCTGCTATTAAGTCATCACCATCAGCTTATTCAATTCTTATAACTGGCGCCACTGGTGGTGTTGGCATGATTGCTGCACAATTGGCTAAACTTTG-GNGTTGGAGAGTTCA] [+] EMBL CD083424 [ATCGGCACGAGGCTGATGAGCTTTTTACCACCTGGTGCAGTAGACATCACATCTGAATTACACTTCACAAAGACTAGACGTATGCCCAATATAACTCGTCCAGACCAACTACTTATTAAGGTTAAAGCAGCATCGTTGAATCCTGTCGATTCTTTGCTTGTCTATGGTTATGGTTCTTCTAGCTTTCATTCATTACGTCGCTTTACATCAAAATATGGTTGTTTTGGCTTACCTGATGCCACGACAGCAGAAAATGCTGACTTTCCTTTTACACCTGGTCGTGATTTTTCTGGTCAAATAGTTGACATCGGTTCAAAAGTTGCTTTATCCAACCTAACTAAGGGAAATAAACTTATTATTGGTACAAATGTGGCCGGTGCTACATGGCCTTTTCTCAGTTCTACTGGATCTGGTTCATTAGCCGAATATATTGTCTGTCCAGCCGATTATGTCGCTCCATTACCTAGTAATGTTTCCTTCATATCTGCAGCTGCATTAGGATATGC ] [+] EMBL CD154628 [ ATTACACTTCACAAAGACTAGACGTATGCCCAATATAACTCGTCCAGACCAACTACTTATTAAGGTTAAAGCAGCATCGTTGAATCCTGTCGATTCTTTGCTTGTCTATGGTTATGGTTCTTCTAGCTTTCATTCATTACGTCGCTTTACATCAAAATATGGTTGTTTTGGCTTACCTGATGCCACGACAGCAGAAAATGCTGACTTTCCTTTTACACCTGGTCGTGATTTTTCTGGTCAAATAGTTGACATCGGTTCAAAAGTTGCTTTATCCAACCTAACTAAGGGAAATAAACTTATTATTGGTACAAATGTGGCCGGTGCTACATGGCCTTTTCTCAGTTCTACTGGATCTGGTTCATTAGCCGAATATATTGTCTGTCCAGCCGATTATGTCGCTCCATTACCTAGTAATGTTTCCTTCATATCTGCAGCTGCATTAGGATATGCTGGTTTAACTGCATGGTCAGCTTTAGTTGATGCTGGTGGAATCAATCCTGCTATTAAGTCATCACCATCAGCTTATTCAATTCTTATAACTGGCGCCACTGGTGGTGTTGGCATGATTGCTGCACAATTGGCTAAACTTTGNNNGTTGGAGAGTTCA] [+] EMBL CD154651 [ ATTACACTTCACAAAGACTAGACGTATGCCCAATATAACTCGTCCAGACCAACTACTTATTAAGGTTAAAGCAGCATCGTTGAATCCTGTCGATTCTTTGCTTGTCTATGGTTATGGTTCTTCTAGCTTTCATTCATTACGTCGCTTTACATCAAAATATGGTTGTTTTGGCTTACCTGATGCCACGACAGCAGAAAATGCTGACTTTCCTTTTACACCTGGTCGTGATTTTTCTGGTCAAATAGTTGACATCGGTTCAAAAGTTGCTTCATCCAACCTAACTAAGGGAAATAAACTTATTATTGGTACAAATGTGGCCGGTGCTACATGGCCTTTTCTCAGTTCTACTGGATCTGGTTCATTAGCCGAATATATTGTCTGTCCAGCCGATTATGTCGCTCCATTACCTAGTAATGTTTCCTTCATATCTGCAGCTGCATTAGGATATGCTGGTTTAACTGCATGGTCAGCTTTAGTTGATGCTGGTGGAATCAATCCTGCTATTAAGTCATCACCATCAGCTTATTCAATTCTTATAACTGGCGCCACTGGTGGTGTTGGCATGATTGCTGCACAATTGGCTAAACTTTG GNGCTGGAGAG ] [+] EMBL CD116065 [ ATTACACTTCACAAAGACTAGACGTATGCCCAATATAACTCGTCCAGACCAACTACTTATTAAGGTTAAAGCAGCATCGTTGAATCCTGTCGATTCTTTGCTTGTCTATGGTTATGGTTCTTCTAGCTTTCATTCATTACGTCGCTTTACATCAAAATATGGTTGTTTTGGCTTACCTGATGCCACGACAGCAGAAAATGCTGACTTTCCTTTTACACCTGGTCGTGATTTCTCTGGTCAAATAGTTGACATCGGTTCAAAAGTTGCTTTATCCAACCTAACTAAGGGAAATAAACTTATTATTGGTACAAATGTGGCCGGTGCTACATGGCCTTTTCTCAGTTCTACTGGATCTGGTTCATTAGCCGAATATATTGTCTGTCCAGCCGATTATGTCGCTCCATTACCTAGTAATGTTTCCTTCATATCTGCAGCTGCATTAGGATATGCTGGTTTAACTGCATGGTCAGCTTTAGTTGATGCTGGTGGAATCAATCCTGCTATTAAGTCATCACCATCAGCTTATTCAATTCTTATAACTGGCGCCACTGGTGGTGTTGGCATGATTGCTGCA ] [+] EMBL CD154341 [ ATTACACTTCACAAAGACTAGACGTATGCCCAATATAACTCGTCCAGACCAACTACTTATTAAGGTTAAAGCAGCATCGTTGAATCCTGTCGATTCTTTGCTTGTCTATGGTTATGGTTCTTCTAGCTTTCATTCATTACGTCGCTTTACATCAAAATATGGTTGTTTTGGCTTACCTGATGCCACGACAGCAGAAAATGCTGACTTTCCTTTTACACCTGGTCGTGATTTTTCTGGTCAAATAGTTGACATCGGTTCAAAAGTTGCTTTATCCAACCTAACTAAGGGAAATAAACTTATTATTGGTACAAATGTGGCCGGTGCTACATGGCCTTTTCTCAGTTCTACTGGATCTGGTTCATTAGCCGAATATATTGTCTGTCCAGCCGATTATGTCGCTCCATTACCTAGTAATGTTTCCTTCATATCTGCAGCTGCATTAGGATATGCTGGTTTAACTGCATGGTCAGCTTTAGTTGATGCTGGTGGAATCAATCCTGCTATTAAGTCATCACCGTCAGCTTATTCAATTCTTATAACTGGCGCCACTGGTGGTGTTGGCATGATTGCTGCACAA ] [+] EMBL CD154485 [ ATTACACTTCACAAAGACTAGACGTATGCCCAATATAACTCGTCCAGATCAACTACTTATTAAGGTTAAAGCAGCATCGTTGAATCCTGTCGATTCTTTGCTTGTCTATGGTTATGGTTCTTCTAGCTTTCATTCATTACGTCGCTTTACATCAAAATATGGTTGTTTTGGCTTACCTGATGCCACGACAGCAGAAAATGCTGACTTTCCTTTTACACCTGGTCGTGATTTTTCTGGTCAAATAGTTGACATCGGTTCAAAAGTTGCTTTATCCAACCTAACTAAGGGAAATAAACTTATTATTGGTACAAATGTGGCCGGTGCTACATGGCCTTTTCTCAGTTCTACTGGATCTGGTTCATTAGCCGAATATATTGTCTGTCCAGCCGATTATGTCGCTCCATTACCTAGTAA ] [+] EMBL CD154365 [ GTTGTTTTGGCTTACCTGATGCCACGACAGCAGAAAATGCTGACTTTCCTTTTACACCTGGTCGTGATTTTTCTGGTCAAATAGTTGACATCGGTTCAAAAGTTGCTTTATCCAACCTAACTAAGGGAAATAAACTTATTATTGGTACAAATGTGGCCGGTGCTACATGGCCTTTTCTCAGTTCTACTGGATCTGGTTCATTAGCCGAATATATTGTCCGTCCAGCCGATTATGTCGCTCCATTACCTAGTAATGTTTCCTTCATATCTGCAGCTGCATTAGGATATGCTGGTTTAACTGCATGGTCAGCTTTAGTTGATGCTGGTGGAATCAACCCTGCTATTAAGTCATCACCATCAGCTTATTCAATTCTTATAACTGGCGCCACTGGTGGTGTTGGCATGATTGCTGCACAATTGGCTAAACTTTG GGGTTGGAGAG ] consensusID : consensus_10093#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence [GACATCACATCTGAATTGCACTTCACAAAGCCTAGACGTATGCCCAATATAGCTCGTCCAGACCAACTACTTATTTAGGTTAAAGCAGCATCGCTGAATCCTGTCGATTCTATGACTTGTCTCATGGTATATAGGTTAATTAATATGCTGGTGCATCTCGATTCACGGTCGACTATTACTATCGAAGAATATAGGTGTGTATTTGGCATTACCGTGATGCCACGACAGCAGAAAATGTTGACTTTCCTTTTACACCTGGTCGTGATTTTTCTGGTCAAATAGTTGACATCGGTTCAAAAGTTGCTTTATCCAACCTAACTAAGGGAAATAAACTTATTATTGGTACAAATGTGGCCGGTGCTACATGGCCTTTTCTCAGTTCTACTGGATCTGGTTCATTAGCCGAATATATTGTCTGTCCAGCCAATTACGTCGCTCCATTACCTAGTAATGTTTCCTTCATATCTGCAGCTGCA] [-] EMBL CD096127 [GACATCACATCTGAATTGCACTTCACAAAGCCTAGACGTATGCCCAATATAGCTCGTCCAGACCAACTACTTATTTAGGTTAAAGCAGCATCGCTGAATCCTGTCGATTCTATGACTTGTCTCATGGTATATAGGTTAATTAATATGCTGGTGCATCTCGATTCACGGTCGACTATTACTATCGAAGAATATAGGTGTGTATTTGGCATTACCGTGATGCCACGACAGCAGAAAATGTTGACTTTCCTTTTACACCTGGTCGTGATTTTTCTGGTCAAATAGTTGACATCGGTTCAAAAGTTGCTTTATCCAACCTAACTAAGGGAAATAAACTTATTATTGGTACAAATGTGGCCGGTGCTACATGGCCTTTTCTCAGTTCTACTGGATCTGGTTCATTAGCCGAATATATTGTCTGTCCAGCCAATTACGTCGCTCCATTACCTAGTAATGTTTCCTTCATATCTGCAGCTGCA] consensusID : consensus_10093#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 451 fasta sequence [TATTCATGAAGATACCGTTTGTTCGATATGTTACTCGCTTGCAGAAAACCTGCAGAGTAAAATTATGCAACTGGTGTGGAAATACATAGTATAATATGAAGCCAAAACTTCCAAAAACTATTTCAGCATGGCAGCTGATGAGCTTTTTACCACCTGGTGCAGTAGACATCACATCTGAATTACACTTCACAAAGACTAGACGTATGCCCAATATAACTCGTCCAGACCAACTACTTATTAAGGTTAAAGCAGCATCGTTGAATCCTGTCGATTCTTTGCTTGTCTATGGTTATGGTTCTTCTAGCTTTCATTCATTACGTCGCTTTACATCAAAATATGGTTGTTTTGGCTTACCTGATGCCACGACAGCAGAAAATGCTGACTTTCCTTTTACACCTGGTCGTGATTTTTCTGGTCAAATAGTTGACATCGGTTCAAAAGTTGCTTTATC] [-] EMBL CD062327 [TATTCATGAAGATACCGTTTGTTCGATATGTTACTCGCTTGCAGAAAACCTGCAGAGTAAAATTATGCAACTGGTGAGGAAATACATAGTATAATATGAAGCCAAAACTTCCAAAAACTATTTCAGCATGGCAGCTGATGAGCTTTTTACCACCTGGTGCAGTAGACATCACATCTGAATTACACTTCACAAAGACTAGACGTATGCCCAATATAACTCGTCCAGACCAACTACTTATTAAGGTTAAAGCAGCATCGTTGAATCCTGTCGATTCTTTGCTTGTCTATGGTTATGGTTCTTCTAGCTTTCATTCATTACGTCGCTTTACATCAAAATATGGTTGTTTTGGCTTACCTGATGCCACGACAGCAGAAAATGCTGACTTTCCTTTTACACCTGGTCGTGATTTTTCTGGTCAAATAGTTGACATCGGTTCAAAAGTTGCTTTATC] [-] EMBL CD122875 [ TGGAAATACATAGTATAATATGAAGCCAAAACTTCCAAAAACTATTTCAGCATGGCAGCTGATGAGCTTTTTACCACCTGGTGCAGTAGACATCACATCTGAATTACACTTCACAAAGACTAGACGTATGCCCAATATAACTCGTCCAGACTAACTACTTATTAAGGTTAAAGCAGCATCGTTGAATCCTGTCGATTCTTTGCTTGTCTATGGTTATGGTTCTTCTAGCTTTCATTCATTACGTCGCTTTACATCAAAATATGGTTGTTTTGGCTTACCTGATGCCACGACAGCAGAAAATGCTGACTTTCCTTTTACACCTGGTCGTGATTTTTCTGGTCAAATAGTTGACATCGGTTCAAAAGT ] [-] EMBL CD122813 [ tgttAATACATAGTATAATATGAAGCCAAAACTTCCAAAAACTATTTCAGCATGGCAGCTGATGAGCTTTTTACCACCTGGTGCAGTAGACATCACATATGAATTACACTTCACAAAGACTAGACGTATGCCCAATATAACTCGTCCAGACCAACTACTTATTAAGGTTAAAGCAGCATCGTTGAATCCTGTCGATTCTTTGCTTGTATATGGTTATGGTTCTTCTAGCTTTCATTCAGTACGTCGCTTTACATCAAAATATGGTTGTTTTGGCTTACCTGATGCCACGACAGCAGAAAATGCTGACTTTCCTTTTACACCTGGTCGTGATTTTTCTGGTCAAATAGTTGACATCGGTTCAAAAGT ] [+] EMBL CD191475 [ ACACTTCACAAAGACTAGACGTATGCCCAATATAACTCGTCCAGACCAACTACTTATTAAGGTTAAAGCAGCATCGTTGAATCCTGTCGATTCTTTGCTTGTCTATGGTTATGGTTCTTCTAGCTTTCATTCATTACGTCGCTTTACATCAAAATATGGTTGTTTTGGCTTACCTGATGCCACGACAGCAGAAAATGCTGACTTTCCTTTT ] [+] EMBL CD077975 [ AGACGTATGCCCAATATAACTCGTCCAGACCAACTACTTATTAAGGTTAAAGCAGCATCGTTGAATCCTGTCGATTCTTTGCTTGTCTATGGTTATGGTTCTTCTAGCTTTCATTCATTACGTCGCTTTACATCAAAATATGGTTGTTTTGGCTTACCTGATGCCACGACAGCAGAAAATGCTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10093#0 ------------------------------------------------------------ consensus_10093#1 ------------------------------------------------------------ consensus_10093#2 TATTCATGAAGATACCGTTTGTTCGATATGTTACTCGCTTGCAGAAAACCTGCAGAGTAA 60 consensus_10093#0 ------------------------------------------------------------ consensus_10093#1 ------------------------------------------------------------ consensus_10093#2 AATTATGCAACTGGTGTGGAAATACATAGTATAATATGAAGCCAAAACTTCCAAAAACTA 120 consensus_10093#0 --ATCGGCACGAGGCTGATGAGCTTTTTACCACCTGGTGCAGTAGACATCACATCTGAAT 58 consensus_10093#1 --------------------------------------------GACATCACATCTGAAT 16 consensus_10093#2 TTTCAGCATGGCAGCTGATGAGCTTTTTACCACCTGGTGCAGTAGACATCACATCTGAAT 180 **************** consensus_10093#0 TACACTTCACAAAGACTAGACGTATGCCCAATATAACTCGTCCAGACCAACTACTTATTA 118 consensus_10093#1 TGCACTTCACAAAGCCTAGACGTATGCCCAATATAGCTCGTCCAGACCAACTACTTATTT 76 consensus_10093#2 TACACTTCACAAAGACTAGACGTATGCCCAATATAACTCGTCCAGACCAACTACTTATTA 240 * ************ ******************** *********************** consensus_10093#0 AGGTTAAAGCAGCATCGTTGAATCCTGTCGATTCTTTG-CTTGTCT-ATGGT-TATGGTT 175 consensus_10093#1 AGGTTAAAGCAGCATCGCTGAATCCTGTCGATTCTATGACTTGTCTCATGGTATATAGGT 136 consensus_10093#2 AGGTTAAAGCAGCATCGTTGAATCCTGTCGATTCTTTG-CTTGTCT-ATGGT-TATGGTT 297 ***************** ***************** ** ******* ***** *** * * consensus_10093#0 CTTCTAGCTTTC------------ATTCATTA-CGTCGCTTTACATCAAA--ATATGGTT 220 consensus_10093#1 TAATTAATATGCTGGTGCATCTCGATTCACGGTCGACTATTACTATCGAAGAATATAGGT 196 consensus_10093#2 CTTCTAGCTTTC------------ATTCATTA-CGTCGCTTTACATCAAA--ATATGGTT 342 ** * * ***** ** * ** *** ** **** * * consensus_10093#0 GT---TTTGGC-TTACC-TGATGCCACGACAGCAGAAAATGCTGACTTTCCTTTTACACC 275 consensus_10093#1 GTGTATTTGGCATTACCGTGATGCCACGACAGCAGAAAATGTTGACTTTCCTTTTACACC 256 consensus_10093#2 GT---TTTGGC-TTACC-TGATGCCACGACAGCAGAAAATGCTGACTTTCCTTTTACACC 397 ** ****** ***** *********************** ****************** consensus_10093#0 TGGTCGTGATTTTTCTGGTCAAATAGTTGACATCGGTTCAAAAGTTGCTTTATCCAACCT 335 consensus_10093#1 TGGTCGTGATTTTTCTGGTCAAATAGTTGACATCGGTTCAAAAGTTGCTTTATCCAACCT 316 consensus_10093#2 TGGTCGTGATTTTTCTGGTCAAATAGTTGACATCGGTTCAAAAGTTGCTTTATC------ 451 ****************************************************** consensus_10093#0 AACTAAGGGAAATAAACTTATTATTGGTACAAATGTGGCCGGTGCTACATGGCCTTTTCT 395 consensus_10093#1 AACTAAGGGAAATAAACTTATTATTGGTACAAATGTGGCCGGTGCTACATGGCCTTTTCT 376 consensus_10093#2 ------------------------------------------------------------ consensus_10093#0 CAGTTCTACTGGATCTGGTTCATTAGCCGAATATATTGTCTGTCCAGCCGATTATGTCGC 455 consensus_10093#1 CAGTTCTACTGGATCTGGTTCATTAGCCGAATATATTGTCTGTCCAGCCAATTACGTCGC 436 consensus_10093#2 ------------------------------------------------------------ consensus_10093#0 TCCATTACCTAGTAATGTTTCCTTCATATCTGCAGCTGCATTAGGATATGCTGGTTTAAC 515 consensus_10093#1 TCCATTACCTAGTAATGTTTCCTTCATATCTGCAGCTGCA-------------------- 476 consensus_10093#2 ------------------------------------------------------------ consensus_10093#0 TGCATGGTCAGCTTTAGTTGATGCTGGTGGAATCAATCCTGCTATTAAGTCATCACCATC 575 consensus_10093#1 ------------------------------------------------------------ consensus_10093#2 ------------------------------------------------------------ consensus_10093#0 AGCTTATTCAATTCTTATAACTGGCGCCACTGGTGGTGTTGGCATGATTGCTGCACAATT 635 consensus_10093#1 ------------------------------------------------------------ consensus_10093#2 ------------------------------------------------------------ consensus_10093#0 GGCTAAACTTTGGNGTTGGAGAGTTCA 662 consensus_10093#1 --------------------------- consensus_10093#2 --------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||