cluster # 1010

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Schistosoma mansoni
cluster # 1010 cluster # 1010 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1010#0 length = 332 sequences # 1

consensus_1010#1 length = 311 sequences # 1

consensusID : consensus_1010#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 332
fasta sequence

                              [TCAAATCGATCAAGTGAAGCTTGAACTATGGCAGGACTTAGTTGAGTTATTAACTTTGCCCCAGTCATATCATTATCATCGGAACCAGACTCTGATCCGTCCGATAAGTCAAAACTTCCATTCATAGGATCATCATTCACGATTGAATTATTTTGTTTAAATTCATATGTATTGTCTTCACTGATCTCATTGAAGTGACAATAAAATCCGTGAATAGCTAAAATTACTTGTGCACGTAAATTTTCTCGGCGTTTTGCAACATCATCGGCACATTTCACAAATTGAATACCTGGAATAAGATGTGAAATCGGGAGAAGAAGATCAGNTATTTG]

[+] EMBL CD195891             [TCAAATCGATCAAGTGAAGCTTGAACTATGGCAGGACTTAGTTGAGTTATTAACTTTGCCCCAGTCATATCATTATCATCGGAACCAGACTCTGATCCGTCCGATAAGTCAAAACTTCCATTCATAGGATCATCATTCACGATTGAATTATTTTGTTTAAATTCATATGTATTGTCTTCACTGATCTCATTGAAGTGACAATAAAATCCGTGAATAGCTAAAATTACTTGTGCACGTAAATTTTCTCGGCGTTTTGCAACATCATCGGCACATTTCACAAATTGAATACCTGGAATAAGATGTGAAATCGGGAGAAGAAGATCAGNTATTTG]




>consensus_1010#0
TCAAATCGATCAAGTGAAGCTTGAACTATGGCAGGACTTAGTTGAGTTATTAACTTTGCC
CCAGTCATATCATTATCATCGGAACCAGACTCTGATCCGTCCGATAAGTCAAAACTTCCA
TTCATAGGATCATCATTCACGATTGAATTATTTTGTTTAAATTCATATGTATTGTCTTCA
CTGATCTCATTGAAGTGACAATAAAATCCGTGAATAGCTAAAATTACTTGTGCACGTAAA
TTTTCTCGGCGTTTTGCAACATCATCGGCACATTTCACAAATTGAATACCTGGAATAAGA
TGTGAAATCGGGAGAAGAAGATCAGNTATTTG

consensusID : consensus_1010#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 311
fasta sequence

                              [TATCATCGGAACCAGACTCTGATCCGTCCGATAAGTCAAAACTTCCATTCATAGGATCATCATTCATGATTGAATTATTTTGTTTAAATTCATATGTATTGTCTTCACTGATCTCATTGAAGTGACAATAAAATCCGTGAATAGCTAAAATTACTTGTGCACGTAAATTTTCTCGGCGTTTTGCAACATCATCGGCACATTTCACAATTGAAATACCTGGAATAAGATGTGAAATCGGGAGAAGAAGACGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAGGAGCTGGTGAAC]

[+] EMBL CD143024             [TATCATCGGAACCAGACTCTGATCCGTCCGATAAGTCAAAACTTCCATTCATAGGATCATCATTCATGATTGAATTATTTTGTTTAAATTCATATGTATTGTCTTCACTGATCTCATTGAAGTGACAATAAAATCCGTGAATAGCTAAAATTACTTGTGCACGTAAATTTTCTCGGCGTTTTGCAACATCATCGGCACATTTCACAATTGAAATACCTGGAATAAGATGTGAAATCGGGAGAAGAAGACGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAGGAGCTGGTGAAC]




>consensus_1010#1
TATCATCGGAACCAGACTCTGATCCGTCCGATAAGTCAAAACTTCCATTCATAGGATCAT
CATTCATGATTGAATTATTTTGTTTAAATTCATATGTATTGTCTTCACTGATCTCATTGA
AGTGACAATAAAATCCGTGAATAGCTAAAATTACTTGTGCACGTAAATTTTCTCGGCGTT
TTGCAACATCATCGGCACATTTCACAATTGAAATACCTGGAATAAGATGTGAAATCGGGA
GAAGAAGACGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAGG
AGCTGGTGAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1010#0      TCAAATCGATCAAGTGAAGCTTGAACTATGGCAGGACTTAGTTGAGTTATTAACTTTGCC 60
consensus_1010#1      ------------------------------------------------------------
                                                                                  

consensus_1010#0      CCAGTCATATCATTATCATCGGAACCAGACTCTGATCCGTCCGATAAGTCAAAACTTCCA 120
consensus_1010#1      -------------TATCATCGGAACCAGACTCTGATCCGTCCGATAAGTCAAAACTTCCA 47
                                   ***********************************************

consensus_1010#0      TTCATAGGATCATCATTCACGATTGAATTATTTTGTTTAAATTCATATGTATTGTCTTCA 180
consensus_1010#1      TTCATAGGATCATCATTCATGATTGAATTATTTTGTTTAAATTCATATGTATTGTCTTCA 107
                      ******************* ****************************************

consensus_1010#0      CTGATCTCATTGAAGTGACAATAAAATCCGTGAATAGCTAAAATTACTTGTGCACGTAAA 240
consensus_1010#1      CTGATCTCATTGAAGTGACAATAAAATCCGTGAATAGCTAAAATTACTTGTGCACGTAAA 167
                      ************************************************************

consensus_1010#0      TTTTCTCGGCGTTTTGCAACATCATCGGCACATTTCACAAATTGAATACCTGGAATAAGA 300
consensus_1010#1      TTTTCTCGGCGTTTTGCAACATCATCGGCACATTTCACAATTGAAATACCTGGAATAAGA 227
                      **************************************** *  ****************

consensus_1010#0      TGTGAAATCGGGAGAAGAAGATCAGNTATTTG---------------------------- 332
consensus_1010#1      TGTGAAATCGGGAGAAGAAGACGACGAACCACTCTCGGACCACTGGGCGAATCGACGACA 287
                      *********************  *   *                                

consensus_1010#0      ------------------------
consensus_1010#1      CCTGGAGAAGAGGAGCTGGTGAAC 311