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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10107#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1050 fasta sequence
[CTCCAGGCCAAAAATTCGGCACGAGGCGTCAATTTGTGATAAAATACCTCATTTTTTTAATTCCAAATCATAATCCTAAGTACGCATACCAGTTTATAGTTCTAAAAAAACGTAAAAAAGTAAGGTATTCAACAGACCCAAATGGGAATCTTTGGGCTACCAATCTCAACAATTTTGGCAGAAAAATGCTGGAAAAATATGGTTGGGCTCCCGGAAAGGGTTTAG-GAAAAAACAGTAACGGTATTAAAGCCCCTATAAAGGCTTCAACACAGAAAGGCACACGGGGGCTGGGTATGAAGTCGGACTTTGGTTTGGGTATCCGGCAGATTGATGAATACGCGAGTCTTCTGCGTAAGCTAAACAACTCCCATAATAGTTCTGATAAAACAAATCCAATCAGTGAATATTTACCAATGAGTTGGAGAAGTGGTATGAAGACTTTAGAGGCAAAGGATGCATCTAAGTATGGTCAGCAAGATCTGTCCATTGTTCTTGGACATACTCAGCCATTTTTGAAAGAAAAAATAGCTTCGCCGAATGCTTCTGCAGAGAAATCTGATTGTCAAATTCCTACTGTGATTAGTCCATTATCTGTCTCTGAATATTTTGCGAAAGCGAAGAAACGCAGACCCCAAAGCGAGCCACAAACTTGTGGTCTGGCTGATGTAAAGTCAGCCAAGTCAATTGAAATTATCGTCCCTGTCGATCAACACGCTACATCATATTCTGTTTCAGTAAAGATC-AATGAT-ACGAAGAGTCCAAATGTAGGAAAATTGAAGAGCCATCAAATCATGAAGAAGGTGAACTGATCACACCACCTGTAGATCCTGATAAAAAAATAAGACATGTCGAAACTATAAATGCAGGTG-AAAATGTCATTAATTCACTATTCATACAGTCCAACTTACTGTCGATTCCTGGATACTGTTATTACTAATTATTTCTGAGTAAAAATTGTACCGACCAGTTTATTGTTTTTTTCTAAAAAAAAACAAGAAATTATACCATGTATACATTGTTAATTAATTTTTCTAATGGTCGCGTNTTTGT]
[+] EMBL CD079468 [CTCCAGGCCAAAAATTCGGCACGAGGCGTCAATTTGTGATAAAATACCTCATTTTTTTAATTCCAAATCATAATCCTAAGTACGCATACCAGTTTATAGTTCTAAAAAAACGTAAAAAAGTAAGGTATTCAACAGACCCAAATGGGAATCTTTGGGCTACCAATCTCAACAATTTTGGCAGAAAAATGCTGGAAAAATATGGTTGGGCTCCCGGAAAGGGTTTAG GAAAAAACAGTAACGGTATTAAAGCCCCTATAAAGGCTTCAACACAGAAAGGCACACGGGGGCTGGGTATGAAGTCGGACTTTGGTTTGGGTATCCGGCAGATTGATGAATACGCGAGTCTTCTGCGTAAGCTAAACAACTCCCATAATAGTTCTGATAAAACAAATCCAATCAGTGAATATTTACCAATGAGTTGGAGAAGTGGTATGAAGACTTTAGAGGCAAAGGATGCATCTAAGTATGGTCAGCAAGATCTGTCCATTGTTCTTGTACATACTCAGCCATTTTTGAAAGAAAAAATAGCTTCGCCGAATGCTTCTGCAGAGAAATCTGATTGTCAAATTCCTACTGTGATTAGTCCATTATCTGTCTCTGAATATTTTGCGAAAGCGAAGAAACGCAGACCCCAAAGCGAGCCACANACTTGTGGTCTGGCTGATGTAAAGTCAGCCAAGTCAATTGAAATTATCGTCCCTGTCGATCAACACGCTACATCATATTCTGTTTCAGTAAAGATCAAATGAT ACGAAGAGT ]
[+] EMBL CD065029 [ CAG AAAATGCTGGAAAAATATGGTTGGGCTCCCGGAAAGGGTTTAGNGAAAAAACAGTAACGGTATTAAAGCCCCTATAAAGGCTTCAACACAGAAAGGCACACGGGGGCTGGGTATGAAGTCGGACTTTGGTTTGGGTATCCGGCAGATTGATGAATACGCGAGTCTTCTGCGTAAGCTAAACAACTCCCATAATAGTTCTGATAAAACAAATCCAATCAGTGAATATTTACCAATGAGTTGGAGAAGTGGTATGAAGACTTTAGAGGCAAAGGATGCATCTAAGTATGGTCAGCAAGATCTGTCCATTGTTCTTGGACATACTCAGCCATTTTTGAAAGAAAAAATAGCTTCGCCGAATGCTTCTGCAGAGAAATCTGATTGTCAAATTCCTACTGTGATTAGTCCATTATCTGTCTCTGAATATTTTGCGAAAGCGAAGAAACGCAGACCCCAAAGCGAGCCACAAACTTGCGGTCTGGCTGATGTAAAGTCA ]
[+] EMBL CD065126 [ CAGAAAAA GCTGGAAAAATATGGCTGGGCTCCCGG AAGGGTTTAG GAAAAAACAGTAACGGCATTAAAGCCCCTATAAAGaa ]
[-] EMBL BG930581 [ TCCCGGAGAGGGTTTAG GAAAAAACAGTAACGGTATTAAAGCCCCTATAAAGGCTTCAACACAGAAAGGCACACGGGGGCTGGGTATGAAGTCGGACTTTGGTTTGGGTATCCGGCAGATTGATGAATACGCGAGTCTTCTGCGTAAGCTAAACAACTCCCATAATAGTTCTGATAAAACAAATCCAATCAGTGAATATTTACCAATGAGTTGGAGAAGTGGTATGAAGACTTTAGAGGCAAAGGATGCATCTAAGTATGGTCAGCAAGATCTGTCCATTGTTCTTGGACATACTCAGCCATTTTTGAAAGAAAAAATAGCTTCGCCGAATGCTTCTGCAGAGAAATCTGATTGTCAAATTCCTACTGTGATTAGTCCATTATCTGTCTCTGAATATTTTGCGAAAGCGAAGAAACGCAGACCCCccatccatc ]
[+] EMBL CD194618 [ TCAGACTTTGGTTTGGGTATCCGGCAGATTGATGAATACGCGAGTCTTCTGCGTAAGCTAAACAACTCCCATAATAGTTCTGATAAAACAAATCCAATCAGTGAATATTTACCAATGAGTTGGAGAAGTGGTATGAAGACTTTAGAGGCAAAGGATGCATCTAAGTATGGTCAGCAAGATCTGTCCATTGTTCTTGGACATACTCAGCCATTTTTGAAAGAAAAAATAGCTTCACCGAATGCTTCTGCAGAGAAATCTGATTGTCAAATTCCTACTGTGATTAGTCCATTATCTGTCTCTGAATATTTTGCGAAAG ]
[+] EMBL CD090824 [ TGGGTATCCGGCCGATCGATGAATACGCGAGTCTTTTGCGTAAGCTAAACAACTCCCATAATAGTTCTGATAAAACAAATCCAATCAGTGAATATTTACCAATGAGTTGGGGAAGTGGTATGAAGACTTTACAGGCGAAG ]
[-] EMBL CD095456 [ gTCCGACAGATTGAT AATACGCGAGTCTTCTGCGT AGCT AACAACTCCCATAATAGTTCTGAT AAACAAATCCAATCAGTGAATATTTACCAATGAGTTGGAGAAGTGGTATGAAGACTTTAGAGGCAAAGGATGCATCTAAGTATGGTCAGCAAGATCTGTCCATTG TCTTGGACATA TCAGCCATTTTTGAAAGAAAAAATAGCTTCGCCGAATG TTCTGCAGAGAAATCTGA TGTC AATT CTACTG GATTAGTCCA TATCTGTCTCTGAAT ]
[-] EMBL CD127058 [ gcATGCATTTAAGTATGGTCAGCAAGATCTGTCCATTGTTCTTGGACATACTCAGCCATTTTTGAAAGAAAAAATAGCTTCGCCGAATGCTTGTGCAGAGAAATTTGATTGTCAAATTCCTACTGTGATTAGTCCATTATCTGTCTCTGAATATTTTGCGAAAGCGAAGAAACGCAGACCCCAAAGCGAGCCACAAACTTGTGGTCTGGCTGATGTAAAGTCAa ]
[+] EMBL CD191443 [ GAGCCACAAACTTGTGGTCTGGCTGATGTAAAGTCAGCCAAGTCAATTGAAATTATCGTCCCTGTCGATCAACACGCTACATCATATTCTGTTTCAGTAAAGATC AATGATAACGAAGAGTCCAAATGTAGGAAAATTGAAGAGCCATCAAATCATGAAGAAGGTGAACTGATCACACCACCTGTAGATCCTGATAAAAAAATAAGACATGTCGAAACTATAAATGCAGGTG AAAATGTCATTAATTCACTATTCATACAGTCCAACTTACTGTCGATTCCTGGATACTGTTATTACTAATTATTTCTGAGTAAAAATTGTACCGACCAGTTTATTGTTTTTTTCTAAAAAAAAACAAGAAATTATACCATGTATACATTGTTAATTAATTTTTCTAATGGTCGCGTNTTTGT]
[+] EMBL AA559404 [ CACAAACTTGTGGTCTGGCTGATGTAAAGTCAGCCAAGTCAATTGAAATTATCGTCCCTGTCGATCAACACGCTACATCATATTCTGTTTCAGTAAAGATC AATGATAACGAAGAGTCCAAATGTAGGAAAATTGAAGAGCCATCAAATCATGAAGAAGGTGAACTGATCACNCCACCTGTAGATCCTGATAAAAAAATAAGACATGTCGAAACTATAAATGCAGGTGAAAAATGTCATTAATTCACTATTCATACAGTCCAACTTACTGTCGATNCCTGGATACTGTTATTACTAATTATTTCTGAGTAAAAATTGTACCGACCAGTTTtntn ]
[-] EMBL AI976893 [ CGAAACTATAAATGCAGGTG AAAATGTCATTAATTCACTATTCACACAGTCCAACTTACTGTCGATTCCTGGATACTGTTATTACTAATTATTTCTGAGTAAAAATTGTACCGACCAGTTTATTGTTTTTTTCTAAAAAAAACCAAGAAATTATACCATGTATACACTGTTAATTAAT ]
consensusID : consensus_10107#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 267 fasta sequence
[CGGACTTTGGTTTGGGTATCCGGCAGATTGATGAATACGCGAGTCTTCTGCTGAATATTTACCAAAGAGTTGGAGAAGTGGTATGAAGACTTTAGAGGCAAAGGATGCATCTAAGTATGGTCAGCAAGATCTGTCCATTGTTCTTGGACATACTCAGCCATTTTTGAAAGAAAAAATAGCTTCGCCGAATGCTTCTGCAGAGAAATCTGATTGTCAAATTCCTACTGTGATTAGTCCATTATCTGTCTCTGAATATTTTGCGAAAGC]
[-] EMBL CD194786 [CGGACTTTGGTTTGGGTATCCGGCAGATTGATGAATACGCGAGTCTTCTGCTGAATATTTACCAAAGAGTTGGAGAAGTGGTATGAAGACTTTAGAGGCAAAGGATGCATCTAAGTATGGTCAGCAAGATCTGTCCATTGTTCTTGGACATACTCAGCCATTTTTGAAAGAAAAAATAGCTTCGCCGAATGCTTCTGCAGAGAAATCTGATTGTCAAATTCCTACTGTGATTAGTCCATTATCTGTCTCTGAATATTTTGCGAAAGC]
consensusID : consensus_10107#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 237 fasta sequence
[CGGCACGAGGAATACCTCATTTTTTTAATCCCAAATCATAATCCTAAGTACGCATACCAGTTTATAGATCTAATATTATCTTCCTGTAACCTTATACTTCAAAATGCTTTCAGAAAAACGTAAAAAAGTAAGGTATTCAACAGACCCAAATGGGAATCTTTGGGCTACCAATCTCAACAATTTTGGCAGAAAATGCTGGAAAAATATGGTTGGGCTCCCGGAAAGGGTTTAGGAAAA]
[+] EMBL CD077772 [CGGCACGAGGAATACCTCATTTTTTTAATCCCAAATCATAATCCTAAGTACGCATACCAGTTTATAGATCTAATATTATCTTCCTGTAACCTTATACTTCAAAATGCTTTCAGAAAAACGTAAAAAAGTAAGGTATTCAACAGACCCAAATGGGAATCTTTGGGCTACCAATCTCAACAATTTTGGCAGAAAATGCTGGAAAAATATGGTTGGGCTCCCGGAAAGGGTTTAGGAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10107#0 CTCCAGGCCAAAAATTCGGCACGAGGCGTCAATTTGTGATAAAATACCTCATTTTTTTAA 60
consensus_10107#1 ------------------------------------------------------------
consensus_10107#2 ------------------------------------------------------------
consensus_10107#0 TTCCAAATCATAATCCTAAGTACGCATACCAGTTTATAGTTCTAAAAAAACGTAAAAAAG 120
consensus_10107#1 ------------------------------------------------------------
consensus_10107#2 ------------------------------------------------------------
consensus_10107#0 TAAGGTATTCAACAGACCCAAATGGGAATCTTTGGGCTACCAATCTCAACAATTTTGGCA 180
consensus_10107#1 ------------------------------------------------------------
consensus_10107#2 ------------------------------------------------------------
consensus_10107#0 GAAAAATGCTGGAAAAATATGGTTGGGCTCCCGGAAAGGGTTTAGGAAAAAACAGTAACG 240
consensus_10107#1 ------------------------------------------------------------
consensus_10107#2 ------------------------------------------------------------
consensus_10107#0 GTATTAAAGCCCCTATAAAGGCTTCAACACAGAAAGGCACACGGGGGCTGGGTATGAAGT 300
consensus_10107#1 ------------------------------------------------------------
consensus_10107#2 ------------------------------------------------------------
consensus_10107#0 CGGACTTTGGTTTGGGTATCCGGCAGATTGATGAATACGCGAGTCTTCTGCGTAAGCTAA 360
consensus_10107#1 CGGACTTTGGTTTGGGTATCCGGCAGATTGATGAATACGCGAGTCTTCTGC--------- 51
consensus_10107#2 -----------------------CGGCACGAGGAATACCTCATTTTTTTAATCC------ 31
* * ** ****** * * ** *
consensus_10107#0 ACAACTCCCATAATAGTTCTGATAAAACAAATCCAATCAGTGAATATTTACCAATGAGTT 420
consensus_10107#1 ----------------------------------------TGAATATTTACCAAAGAGTT 71
consensus_10107#2 ----------------------------------------CAAATCATAATCCTA-AGTA 50
*** * * * ***
consensus_10107#0 GGAGAAGTGGTATGAAGACTTTAGAGGCAAAGGATGCATCTAAGTATGGTCAGCAAGATC 480
consensus_10107#1 GGAGAAGTGGTATGAAGACTTTAGAGGCAAAGGATGCATCTAAGTATGGTCAGCAAGATC 131
consensus_10107#2 CGCATACCAGTTTATAGATCTAA----TATTATCTTCCTGTAACCTTATACTTCAAAATG 106
* * ** * *** * * * * * * *** * * *** **
consensus_10107#0 TGTCCATTGTTCTTGGACATACTCAGCCATTTTTGAAAGAAAAAATAGCTTCGCCGAA-T 539
consensus_10107#1 TGTCCATTGTTCTTGGACATACTCAGCCATTTTTGAAAGAAAAAATAGCTTCGCCGAA-T 190
consensus_10107#2 CTTTCAGAAAAACGTAAAAAAGTAAGGTATTCAACAGACCCAAATGGGAATCTTTGGGCT 166
* ** * * * * ** *** * * *** * ** * *
consensus_10107#0 GCTTCTGCAGAGAAATCTGATTGTCAAATTCCTACTGTGATTAGTCCATTATCTGTCTCT 599
consensus_10107#1 GCTTCTGCAGAGAAATCTGATTGTCAAATTCCTACTGTGATTAGTCCATTATCTGTCTCT 250
consensus_10107#2 ACCAATCTCAACAATTTTGGCAGAAAA-----TGCTGGAAAAATATGGTTGGGCTCCCGG 221
* * * ** * ** * ** * *** * * ** *
consensus_10107#0 GAATATTTTGCGAAAGCGAAGAAACGCAGACCCCAAAGCGAGCCACAAACTTGTGGTCTG 659
consensus_10107#1 GAATATTTTGCGAAAGC------------------------------------------- 267
consensus_10107#2 AAAGGGTTTAGGAAAA-------------------------------------------- 237
** *** ****
consensus_10107#0 GCTGATGTAAAGTCAGCCAAGTCAATTGAAATTATCGTCCCTGTCGATCAACACGCTACA 719
consensus_10107#1 ------------------------------------------------------------
consensus_10107#2 ------------------------------------------------------------
consensus_10107#0 TCATATTCTGTTTCAGTAAAGATCAATGATACGAAGAGTCCAAATGTAGGAAAATTGAAG 779
consensus_10107#1 ------------------------------------------------------------
consensus_10107#2 ------------------------------------------------------------
consensus_10107#0 AGCCATCAAATCATGAAGAAGGTGAACTGATCACACCACCTGTAGATCCTGATAAAAAAA 839
consensus_10107#1 ------------------------------------------------------------
consensus_10107#2 ------------------------------------------------------------
consensus_10107#0 TAAGACATGTCGAAACTATAAATGCAGGTGAAAATGTCATTAATTCACTATTCATACAGT 899
consensus_10107#1 ------------------------------------------------------------
consensus_10107#2 ------------------------------------------------------------
consensus_10107#0 CCAACTTACTGTCGATTCCTGGATACTGTTATTACTAATTATTTCTGAGTAAAAATTGTA 959
consensus_10107#1 ------------------------------------------------------------
consensus_10107#2 ------------------------------------------------------------
consensus_10107#0 CCGACCAGTTTATTGTTTTTTTCTAAAAAAAAACAAGAAATTATACCATGTATACATTGT 1019
consensus_10107#1 ------------------------------------------------------------
consensus_10107#2 ------------------------------------------------------------
consensus_10107#0 TAATTAATTTTTCTAATGGTCGCGTNTTTGT 1050
consensus_10107#1 -------------------------------
consensus_10107#2 -------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||