These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10107#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1050 fasta sequence [CTCCAGGCCAAAAATTCGGCACGAGGCGTCAATTTGTGATAAAATACCTCATTTTTTTAATTCCAAATCATAATCCTAAGTACGCATACCAGTTTATAGTTCTAAAAAAACGTAAAAAAGTAAGGTATTCAACAGACCCAAATGGGAATCTTTGGGCTACCAATCTCAACAATTTTGGCAGAAAAATGCTGGAAAAATATGGTTGGGCTCCCGGAAAGGGTTTAG-GAAAAAACAGTAACGGTATTAAAGCCCCTATAAAGGCTTCAACACAGAAAGGCACACGGGGGCTGGGTATGAAGTCGGACTTTGGTTTGGGTATCCGGCAGATTGATGAATACGCGAGTCTTCTGCGTAAGCTAAACAACTCCCATAATAGTTCTGATAAAACAAATCCAATCAGTGAATATTTACCAATGAGTTGGAGAAGTGGTATGAAGACTTTAGAGGCAAAGGATGCATCTAAGTATGGTCAGCAAGATCTGTCCATTGTTCTTGGACATACTCAGCCATTTTTGAAAGAAAAAATAGCTTCGCCGAATGCTTCTGCAGAGAAATCTGATTGTCAAATTCCTACTGTGATTAGTCCATTATCTGTCTCTGAATATTTTGCGAAAGCGAAGAAACGCAGACCCCAAAGCGAGCCACAAACTTGTGGTCTGGCTGATGTAAAGTCAGCCAAGTCAATTGAAATTATCGTCCCTGTCGATCAACACGCTACATCATATTCTGTTTCAGTAAAGATC-AATGAT-ACGAAGAGTCCAAATGTAGGAAAATTGAAGAGCCATCAAATCATGAAGAAGGTGAACTGATCACACCACCTGTAGATCCTGATAAAAAAATAAGACATGTCGAAACTATAAATGCAGGTG-AAAATGTCATTAATTCACTATTCATACAGTCCAACTTACTGTCGATTCCTGGATACTGTTATTACTAATTATTTCTGAGTAAAAATTGTACCGACCAGTTTATTGTTTTTTTCTAAAAAAAAACAAGAAATTATACCATGTATACATTGTTAATTAATTTTTCTAATGGTCGCGTNTTTGT] [+] EMBL CD079468 [CTCCAGGCCAAAAATTCGGCACGAGGCGTCAATTTGTGATAAAATACCTCATTTTTTTAATTCCAAATCATAATCCTAAGTACGCATACCAGTTTATAGTTCTAAAAAAACGTAAAAAAGTAAGGTATTCAACAGACCCAAATGGGAATCTTTGGGCTACCAATCTCAACAATTTTGGCAGAAAAATGCTGGAAAAATATGGTTGGGCTCCCGGAAAGGGTTTAG GAAAAAACAGTAACGGTATTAAAGCCCCTATAAAGGCTTCAACACAGAAAGGCACACGGGGGCTGGGTATGAAGTCGGACTTTGGTTTGGGTATCCGGCAGATTGATGAATACGCGAGTCTTCTGCGTAAGCTAAACAACTCCCATAATAGTTCTGATAAAACAAATCCAATCAGTGAATATTTACCAATGAGTTGGAGAAGTGGTATGAAGACTTTAGAGGCAAAGGATGCATCTAAGTATGGTCAGCAAGATCTGTCCATTGTTCTTGTACATACTCAGCCATTTTTGAAAGAAAAAATAGCTTCGCCGAATGCTTCTGCAGAGAAATCTGATTGTCAAATTCCTACTGTGATTAGTCCATTATCTGTCTCTGAATATTTTGCGAAAGCGAAGAAACGCAGACCCCAAAGCGAGCCACANACTTGTGGTCTGGCTGATGTAAAGTCAGCCAAGTCAATTGAAATTATCGTCCCTGTCGATCAACACGCTACATCATATTCTGTTTCAGTAAAGATCAAATGAT ACGAAGAGT ] [+] EMBL CD065029 [ CAG AAAATGCTGGAAAAATATGGTTGGGCTCCCGGAAAGGGTTTAGNGAAAAAACAGTAACGGTATTAAAGCCCCTATAAAGGCTTCAACACAGAAAGGCACACGGGGGCTGGGTATGAAGTCGGACTTTGGTTTGGGTATCCGGCAGATTGATGAATACGCGAGTCTTCTGCGTAAGCTAAACAACTCCCATAATAGTTCTGATAAAACAAATCCAATCAGTGAATATTTACCAATGAGTTGGAGAAGTGGTATGAAGACTTTAGAGGCAAAGGATGCATCTAAGTATGGTCAGCAAGATCTGTCCATTGTTCTTGGACATACTCAGCCATTTTTGAAAGAAAAAATAGCTTCGCCGAATGCTTCTGCAGAGAAATCTGATTGTCAAATTCCTACTGTGATTAGTCCATTATCTGTCTCTGAATATTTTGCGAAAGCGAAGAAACGCAGACCCCAAAGCGAGCCACAAACTTGCGGTCTGGCTGATGTAAAGTCA ] [+] EMBL CD065126 [ CAGAAAAA GCTGGAAAAATATGGCTGGGCTCCCGG AAGGGTTTAG GAAAAAACAGTAACGGCATTAAAGCCCCTATAAAGaa ] [-] EMBL BG930581 [ TCCCGGAGAGGGTTTAG GAAAAAACAGTAACGGTATTAAAGCCCCTATAAAGGCTTCAACACAGAAAGGCACACGGGGGCTGGGTATGAAGTCGGACTTTGGTTTGGGTATCCGGCAGATTGATGAATACGCGAGTCTTCTGCGTAAGCTAAACAACTCCCATAATAGTTCTGATAAAACAAATCCAATCAGTGAATATTTACCAATGAGTTGGAGAAGTGGTATGAAGACTTTAGAGGCAAAGGATGCATCTAAGTATGGTCAGCAAGATCTGTCCATTGTTCTTGGACATACTCAGCCATTTTTGAAAGAAAAAATAGCTTCGCCGAATGCTTCTGCAGAGAAATCTGATTGTCAAATTCCTACTGTGATTAGTCCATTATCTGTCTCTGAATATTTTGCGAAAGCGAAGAAACGCAGACCCCccatccatc ] [+] EMBL CD194618 [ TCAGACTTTGGTTTGGGTATCCGGCAGATTGATGAATACGCGAGTCTTCTGCGTAAGCTAAACAACTCCCATAATAGTTCTGATAAAACAAATCCAATCAGTGAATATTTACCAATGAGTTGGAGAAGTGGTATGAAGACTTTAGAGGCAAAGGATGCATCTAAGTATGGTCAGCAAGATCTGTCCATTGTTCTTGGACATACTCAGCCATTTTTGAAAGAAAAAATAGCTTCACCGAATGCTTCTGCAGAGAAATCTGATTGTCAAATTCCTACTGTGATTAGTCCATTATCTGTCTCTGAATATTTTGCGAAAG ] [+] EMBL CD090824 [ TGGGTATCCGGCCGATCGATGAATACGCGAGTCTTTTGCGTAAGCTAAACAACTCCCATAATAGTTCTGATAAAACAAATCCAATCAGTGAATATTTACCAATGAGTTGGGGAAGTGGTATGAAGACTTTACAGGCGAAG ] [-] EMBL CD095456 [ gTCCGACAGATTGAT AATACGCGAGTCTTCTGCGT AGCT AACAACTCCCATAATAGTTCTGAT AAACAAATCCAATCAGTGAATATTTACCAATGAGTTGGAGAAGTGGTATGAAGACTTTAGAGGCAAAGGATGCATCTAAGTATGGTCAGCAAGATCTGTCCATTG TCTTGGACATA TCAGCCATTTTTGAAAGAAAAAATAGCTTCGCCGAATG TTCTGCAGAGAAATCTGA TGTC AATT CTACTG GATTAGTCCA TATCTGTCTCTGAAT ] [-] EMBL CD127058 [ gcATGCATTTAAGTATGGTCAGCAAGATCTGTCCATTGTTCTTGGACATACTCAGCCATTTTTGAAAGAAAAAATAGCTTCGCCGAATGCTTGTGCAGAGAAATTTGATTGTCAAATTCCTACTGTGATTAGTCCATTATCTGTCTCTGAATATTTTGCGAAAGCGAAGAAACGCAGACCCCAAAGCGAGCCACAAACTTGTGGTCTGGCTGATGTAAAGTCAa ] [+] EMBL CD191443 [ GAGCCACAAACTTGTGGTCTGGCTGATGTAAAGTCAGCCAAGTCAATTGAAATTATCGTCCCTGTCGATCAACACGCTACATCATATTCTGTTTCAGTAAAGATC AATGATAACGAAGAGTCCAAATGTAGGAAAATTGAAGAGCCATCAAATCATGAAGAAGGTGAACTGATCACACCACCTGTAGATCCTGATAAAAAAATAAGACATGTCGAAACTATAAATGCAGGTG AAAATGTCATTAATTCACTATTCATACAGTCCAACTTACTGTCGATTCCTGGATACTGTTATTACTAATTATTTCTGAGTAAAAATTGTACCGACCAGTTTATTGTTTTTTTCTAAAAAAAAACAAGAAATTATACCATGTATACATTGTTAATTAATTTTTCTAATGGTCGCGTNTTTGT] [+] EMBL AA559404 [ CACAAACTTGTGGTCTGGCTGATGTAAAGTCAGCCAAGTCAATTGAAATTATCGTCCCTGTCGATCAACACGCTACATCATATTCTGTTTCAGTAAAGATC AATGATAACGAAGAGTCCAAATGTAGGAAAATTGAAGAGCCATCAAATCATGAAGAAGGTGAACTGATCACNCCACCTGTAGATCCTGATAAAAAAATAAGACATGTCGAAACTATAAATGCAGGTGAAAAATGTCATTAATTCACTATTCATACAGTCCAACTTACTGTCGATNCCTGGATACTGTTATTACTAATTATTTCTGAGTAAAAATTGTACCGACCAGTTTtntn ] [-] EMBL AI976893 [ CGAAACTATAAATGCAGGTG AAAATGTCATTAATTCACTATTCACACAGTCCAACTTACTGTCGATTCCTGGATACTGTTATTACTAATTATTTCTGAGTAAAAATTGTACCGACCAGTTTATTGTTTTTTTCTAAAAAAAACCAAGAAATTATACCATGTATACACTGTTAATTAAT ] consensusID : consensus_10107#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 267 fasta sequence [CGGACTTTGGTTTGGGTATCCGGCAGATTGATGAATACGCGAGTCTTCTGCTGAATATTTACCAAAGAGTTGGAGAAGTGGTATGAAGACTTTAGAGGCAAAGGATGCATCTAAGTATGGTCAGCAAGATCTGTCCATTGTTCTTGGACATACTCAGCCATTTTTGAAAGAAAAAATAGCTTCGCCGAATGCTTCTGCAGAGAAATCTGATTGTCAAATTCCTACTGTGATTAGTCCATTATCTGTCTCTGAATATTTTGCGAAAGC] [-] EMBL CD194786 [CGGACTTTGGTTTGGGTATCCGGCAGATTGATGAATACGCGAGTCTTCTGCTGAATATTTACCAAAGAGTTGGAGAAGTGGTATGAAGACTTTAGAGGCAAAGGATGCATCTAAGTATGGTCAGCAAGATCTGTCCATTGTTCTTGGACATACTCAGCCATTTTTGAAAGAAAAAATAGCTTCGCCGAATGCTTCTGCAGAGAAATCTGATTGTCAAATTCCTACTGTGATTAGTCCATTATCTGTCTCTGAATATTTTGCGAAAGC] consensusID : consensus_10107#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 237 fasta sequence [CGGCACGAGGAATACCTCATTTTTTTAATCCCAAATCATAATCCTAAGTACGCATACCAGTTTATAGATCTAATATTATCTTCCTGTAACCTTATACTTCAAAATGCTTTCAGAAAAACGTAAAAAAGTAAGGTATTCAACAGACCCAAATGGGAATCTTTGGGCTACCAATCTCAACAATTTTGGCAGAAAATGCTGGAAAAATATGGTTGGGCTCCCGGAAAGGGTTTAGGAAAA] [+] EMBL CD077772 [CGGCACGAGGAATACCTCATTTTTTTAATCCCAAATCATAATCCTAAGTACGCATACCAGTTTATAGATCTAATATTATCTTCCTGTAACCTTATACTTCAAAATGCTTTCAGAAAAACGTAAAAAAGTAAGGTATTCAACAGACCCAAATGGGAATCTTTGGGCTACCAATCTCAACAATTTTGGCAGAAAATGCTGGAAAAATATGGTTGGGCTCCCGGAAAGGGTTTAGGAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10107#0 CTCCAGGCCAAAAATTCGGCACGAGGCGTCAATTTGTGATAAAATACCTCATTTTTTTAA 60 consensus_10107#1 ------------------------------------------------------------ consensus_10107#2 ------------------------------------------------------------ consensus_10107#0 TTCCAAATCATAATCCTAAGTACGCATACCAGTTTATAGTTCTAAAAAAACGTAAAAAAG 120 consensus_10107#1 ------------------------------------------------------------ consensus_10107#2 ------------------------------------------------------------ consensus_10107#0 TAAGGTATTCAACAGACCCAAATGGGAATCTTTGGGCTACCAATCTCAACAATTTTGGCA 180 consensus_10107#1 ------------------------------------------------------------ consensus_10107#2 ------------------------------------------------------------ consensus_10107#0 GAAAAATGCTGGAAAAATATGGTTGGGCTCCCGGAAAGGGTTTAGGAAAAAACAGTAACG 240 consensus_10107#1 ------------------------------------------------------------ consensus_10107#2 ------------------------------------------------------------ consensus_10107#0 GTATTAAAGCCCCTATAAAGGCTTCAACACAGAAAGGCACACGGGGGCTGGGTATGAAGT 300 consensus_10107#1 ------------------------------------------------------------ consensus_10107#2 ------------------------------------------------------------ consensus_10107#0 CGGACTTTGGTTTGGGTATCCGGCAGATTGATGAATACGCGAGTCTTCTGCGTAAGCTAA 360 consensus_10107#1 CGGACTTTGGTTTGGGTATCCGGCAGATTGATGAATACGCGAGTCTTCTGC--------- 51 consensus_10107#2 -----------------------CGGCACGAGGAATACCTCATTTTTTTAATCC------ 31 * * ** ****** * * ** * consensus_10107#0 ACAACTCCCATAATAGTTCTGATAAAACAAATCCAATCAGTGAATATTTACCAATGAGTT 420 consensus_10107#1 ----------------------------------------TGAATATTTACCAAAGAGTT 71 consensus_10107#2 ----------------------------------------CAAATCATAATCCTA-AGTA 50 *** * * * *** consensus_10107#0 GGAGAAGTGGTATGAAGACTTTAGAGGCAAAGGATGCATCTAAGTATGGTCAGCAAGATC 480 consensus_10107#1 GGAGAAGTGGTATGAAGACTTTAGAGGCAAAGGATGCATCTAAGTATGGTCAGCAAGATC 131 consensus_10107#2 CGCATACCAGTTTATAGATCTAA----TATTATCTTCCTGTAACCTTATACTTCAAAATG 106 * * ** * *** * * * * * * *** * * *** ** consensus_10107#0 TGTCCATTGTTCTTGGACATACTCAGCCATTTTTGAAAGAAAAAATAGCTTCGCCGAA-T 539 consensus_10107#1 TGTCCATTGTTCTTGGACATACTCAGCCATTTTTGAAAGAAAAAATAGCTTCGCCGAA-T 190 consensus_10107#2 CTTTCAGAAAAACGTAAAAAAGTAAGGTATTCAACAGACCCAAATGGGAATCTTTGGGCT 166 * ** * * * * ** *** * * *** * ** * * consensus_10107#0 GCTTCTGCAGAGAAATCTGATTGTCAAATTCCTACTGTGATTAGTCCATTATCTGTCTCT 599 consensus_10107#1 GCTTCTGCAGAGAAATCTGATTGTCAAATTCCTACTGTGATTAGTCCATTATCTGTCTCT 250 consensus_10107#2 ACCAATCTCAACAATTTTGGCAGAAAA-----TGCTGGAAAAATATGGTTGGGCTCCCGG 221 * * * ** * ** * ** * *** * * ** * consensus_10107#0 GAATATTTTGCGAAAGCGAAGAAACGCAGACCCCAAAGCGAGCCACAAACTTGTGGTCTG 659 consensus_10107#1 GAATATTTTGCGAAAGC------------------------------------------- 267 consensus_10107#2 AAAGGGTTTAGGAAAA-------------------------------------------- 237 ** *** **** consensus_10107#0 GCTGATGTAAAGTCAGCCAAGTCAATTGAAATTATCGTCCCTGTCGATCAACACGCTACA 719 consensus_10107#1 ------------------------------------------------------------ consensus_10107#2 ------------------------------------------------------------ consensus_10107#0 TCATATTCTGTTTCAGTAAAGATCAATGATACGAAGAGTCCAAATGTAGGAAAATTGAAG 779 consensus_10107#1 ------------------------------------------------------------ consensus_10107#2 ------------------------------------------------------------ consensus_10107#0 AGCCATCAAATCATGAAGAAGGTGAACTGATCACACCACCTGTAGATCCTGATAAAAAAA 839 consensus_10107#1 ------------------------------------------------------------ consensus_10107#2 ------------------------------------------------------------ consensus_10107#0 TAAGACATGTCGAAACTATAAATGCAGGTGAAAATGTCATTAATTCACTATTCATACAGT 899 consensus_10107#1 ------------------------------------------------------------ consensus_10107#2 ------------------------------------------------------------ consensus_10107#0 CCAACTTACTGTCGATTCCTGGATACTGTTATTACTAATTATTTCTGAGTAAAAATTGTA 959 consensus_10107#1 ------------------------------------------------------------ consensus_10107#2 ------------------------------------------------------------ consensus_10107#0 CCGACCAGTTTATTGTTTTTTTCTAAAAAAAAACAAGAAATTATACCATGTATACATTGT 1019 consensus_10107#1 ------------------------------------------------------------ consensus_10107#2 ------------------------------------------------------------ consensus_10107#0 TAATTAATTTTTCTAATGGTCGCGTNTTTGT 1050 consensus_10107#1 ------------------------------- consensus_10107#2 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||