These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10121#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1023 fasta sequence [ACGAATTAAGTGAAGTGTGGAAGTAACAGGGGACGGAGTGAGAATGTGGAGAGTGTGACGTGGTGATTGTGGTTTTGTTTGTGGTTGTAGTACTGTTTTTGTTTTTTCGTTGTATTTGTAGTTGTAATTGTAATAGTTGTAGTGTGGTGAACAACAACAACAACAACAAGAACAAGAACAAGAACAAGAACAAGAAGACGAGTGGGGACAATCCAATGTATTTGAAGTGAAAATTGCAGAATGTCTTAGTAAAATGTGAGAGGAAAACAGTAAATACTTAATTTGCAAAATATCAATGAACCTTGACTGTTCCTTTGCGAATGTCAATCAATCGTCTCACAATTCACTGTTCCTTCATTTCAATACCAATGGCTTTCTGTTCACGTTCTTTCCTCCTCCAACTTGACGAATTTCTGCTGCCAGACATTCTATTCCTGACTCGCCATATATACTACTTATATAGATATAAGTAGTATTAG---------TAGTAGTAGTAGTAGTAGTATTCGTTGTTATTGATGAGTGTGATGATGTTGGGCTGTGATTGTGTGATTGTGGTAGTATGTATGTG---ATAGTGGGTATTGCGTGTGATGTGAAAATGTGATGTTAGTGGTTGTGAATAGGTATGTTGATGGTGGGATTCGAACCGGCGCCGTTTAAAGGTGGTTCCCCATCCAACTCCTTAGACCACTCGGCCACACGGAAAATGATTGGAACTACACAAAACTTACTCATCAATTTCAACATTCCATTTCACCATCATCATGCGAATACACTCTGCTATTCACGACAACACTACACACTACACAACACATACTACTCCACTCAATCACACACTCAATCAATCAACCACACAACCACTCACCACTCATCACCCCGTGTCAATCCATCCACCACTGTCTGCTTCGACAAACTACGCAGTGTAACACGTTCACACGATGAGTCAGTGAGGGAGAGTGTGTTTCATCCTGTCTGTTTGACACTTGTCCACTCAATGTATCTGCATGCCATCCCACGTGCTGAATCAAG] [+] EMBL CD086349 [ACGAATTAAGTGAAGTGTGGAAGTAACAGGGGACGGAGTGAGAATGTGGAGAGTGTGACGTGGTGATTGTGGTTTTGTTTGTGGTTGTAGTACTGTTTTTGTTTTTTCGTTGTATTTGTAGTTGTAATTGTAATAGTTGTAGTGTGGTGAACAACAACAACAACAACAAGAACAAGAACAAGAACAAGAACAAGAAGACGAGTGGGGACAATCCAATGTATTTGAAGTGAAAATTGCAGAATGTCTTAGTAAAATGTGAGAGGAAAACAGTAAATACTTAATTTGCAAAATATCAATGAACCTTGACTGTTCCTTTGCGAATGTCAATCAATCGTCTCACAATTCACTGTTCCTTCATTTCAATACCAATCGCTTTCTGTTCACGTTCTTTCCTCCTTGAACTTCACGAATTTCTGCTGCCAGACATTCTATTCCTGACTCGCCATATATACTACTTATATAGATATAAGTAGTATTAG TAGTAGTAGTAGTAGTAGTATTCGTTGTTGTTGATGACTGTGATGATGTTGGGCTGTGATTGTGTGATTGTGGTAGTATGTATGTGGGTATTGTGGGTATTGTGTGTGATGTGAAAATGTGATGTTAGTGGTTGTGAATANGTATGTTGATGGTGGGATTCGAACCGGCGTCGTct ] [-] EMBL CD085241 [ AAGAAGAAGAACACGAGTGAGGACAATCCAATGTATTTGAAGTGAAAATTGTAGAGTGTCTTAGTAAAATGTGAGAGGAAAACAGTAAATACTTAATTCGCAAAATATCAATGAACCTTGACTGTTCCTTTGCGAATGTCAATCAATCGTCTCACAATTCACTGTTCCTTCATTTCAATACCAATGGCTTTCTGTTCACGTTCTTTCCTCCTCCAACTTGACGAATTTCTGCTGCCAGACATTCTATTCCTGACTCGCCATATATACTACTTATATAGATATAAGTAGTATTAGTATTAGTATTAGTAGTAGTAGTAGTAGTATTCGTTGTTATTGATGAGTGT ] [-] EMBL CD195019 [ ATCAATGAACCTTGACTGTTCCTTTGCGAATGTCAATCAATTGTCTCACAATTCACTGTTCCTTCATTTCAATACCAATGGCCTTCTGTTCACGTTCTTTCCTCCTCCAACTTGACGAATTTCTGCTGCCAGACATTCTATTCCTGACTCGCCATATATACTACTTATATAGATATAAGTAGTATTAG TA T TAGTAGTAGTAGTATTCGTTGTTATTGATGAGTGTGATGATGTTGGGCTGTGATTGTGTGATTGTGGTAGTATGTATGTG ATAGTGGGTATTGCGTGTGATGTGAAAATGTGATGTTAGTGGTTGTGAATAGGTATGTTGATGGTGGGATTCGAACCGGCGCCGTTTAAAGGTGGTTCCCCATCCAACTCCTTAGACCACTCGGCCACACGGAAAATGATTGGAACTACACAAAACTTACTCATCAATTTCAACATTCCATTTCACCATCATCA ] [-] EMBL CD195754 [ GTAGTATTCGTTGTTATTGATGAGTGTGATGATGTTGGGCTGTGATTGTGTGATTGTGGTAGTATGTATGTG ATAGTGGGTATTGCGTGTGATGTGAAAATGTGATGTTAGTGGTTGTGAATAGGTATGTTGATGGTGGGATTTGAACCCGCGCCGTTTAAAGGTGGTTTCCCATCCAACTCCTTAGATCCCTCGGCCACAC ] [-] EMBL CD068408 [ TGATTGTGGTAGTATGTATGTG ATAGTGGTTATGGCGTGTGATGTGAAAATGTGATGTTAGTGGTTGTGAATAGGTATGTTGATGATGGGATTTGAACCGGCGCCGTTTAAAGGTGGTTCCCCATCCAACTCCTTAGACCACTCGGCCACACGGAAAATGATTGGAACTACACAAAACTTACTCATCAATTTCAACATTCCATTTCACCATCATCATGCGAATACA ] [-] EMBL CD089102 [ GCGTGTGATGTGAAAATGTGATGTTAGTGGTTGTGAATAGGTATGTTGATGGT GGATTCGAACCGGCGCCGTTTAAAGGTGGTTCCCCATCCAACTCCTTAGACCACTCGGCCACACGGAAAATGATTGGAACTACACAAAACTTACTCATCAATTTCAACATTCCATTTCACCATCATCATGCAAATACACTCTGCTATTCACGACAACACTACACACTACACAACACATACTACTCCACTCAATCACACACTCAATCAATCAACCACACAACCACTCACCACTCATCACCCCGTGTCAATCCATCCACCACTGTCTGCTTCGACAAACTACGCAGTGTAACACGTTCACACGATGAGTCAGTGAGGGAGAGTGTGTTTCATCCTGTCT ] [+] EMBL CD086978 [ tACAAACTACGCAGTGTAACACGTTCACTCGATGAGTCAGTGAGGGAGAGTGTGTTTCATCCTGTCTGTTTGACACTTGTCCACTCAATGTATCTGCATGCCATCCCACGTGCTGAATCAAG] consensusID : consensus_10121#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 543 fasta sequence [TGAATAGGTATGTTGATGGTGGGATTCGAACCGGCGCCGTTTAAAGGTGGTTCCCCATCCAACGCCTTAGACCACTCGACCACACGGAAAATGATTGGAACTACACAAAACTTACTCATCAATTTCAACATTCCATTTCACCATCATCATGCAAATACACTCTGCTATTCACGACAACACTACACACTACACAACACATACTACTCACTCACTCACTCACTCACTCAATCACTCACTCACTCACACACTCACTCACACACTCAATCAATCAACCACACAACCACTCACCACTCATCACCCCGTGTCAATCCATCCACCACTGTCTGCTTCGACAAACTACGCAGTGTAACACGTTCACACGATGAGTCAGTGAGGGAGAGTGTGTTTCATCCTGTCTGTTTGACACTTGTCCACTCAATGTGTCTGCATGCCATCCCACGTGCTGAATCAAGTTCACACTGAGTTAAGCAGCAATCGGCACACATCACAGTAGTAGTTGGATACAGTGAGGAGACGATGTTGTGTGTGAGTGGGACTAGGCAA] [-] EMBL CD086902 [TGAATAGGTATGTTGATGGTGGGATTCGAACCGGCGCCGTTTAAAGGTGGTTCCCCATCCAACGCCTTAGACCACTCGACCACACGGAAAATGATTGGAACTACACAAAACTTACTCATCAATTTCAACATTCCATTTCACCATCATCATGCAAATACACTCTGCTATTCACGACAACACTACACACTACACAACACATACT ACTCACTCACTCACTCACTCAATCACTCACTCACTCACACACTCAATCACACACTCAATCAATCAACCACACAACCACTCACCACTCATCACCCCGTGTCAATCCATCCACCACTGTCTGCTTCGACAAACTACGCAGTGTAACACGTTCAC ] [-] EMBL CD085801 [ GGTGCCGTTTAAAGGTGGTTCCCCATCCAACGCCTTAGACCACTCGGTCACACGGAAAATGATTGGAGATACACAAAACTTACTCATCAATTTCAACATTCCATTTCACCATCATCATGCAAATACACTCTGCTATTCACCACAACACTACACACTACACAACACATACTATTCACTCACTCACTCACTCAATCACTCACTCACTCACTCAATCACTCACTCACACACTCAATCAATCAACCACACAACCACTCACCACTCATCACCCCGTGTCAATCCATCCACCACTGTCTGCTTCGACAAACTACGCAGTGTAACACGTTCAGACGATCAGTCAGTGAGGGAGAGTGTGTTTCATCCTGTCTGTTTGACACTTGTCCACTCAATGTGTCTGCATGCCATCCCACGTGCTGAATCAAGTTCACACTGAGTTAAGCAGCAATCGGCACACATCACAGTAGTAGTTGGATACAGTGAGGAGACGATGTTGTGTGTGAGTGGGACTAGGCAA] [-] EMBL CD085747 [ GTGGTTCCCCATCCAACTCCTTAGACCACTCGACCACACGGAAAATGATTGGAACTACACAAAACTTACTCATCAATTTCAACATTCCATTTCACCATCATCATGCAAATACACTCTGCTATTCACGACAACACTACACACTACACAACACATACTACTCACTCACTCACTCACTCACACA CACT A TCACACACTCAATCACTCACACACTCAATCAATCAACCACACAACCACTCACCACTCATCACCCCGTGTCAATCCATCCACCACTGTCTGCTTCGACAAACTACGCAGTGTAACACGTTCACACGATGAGTCAGTGAGGG ] [-] EMBL CD191118 [ AGACCACTCGACCACACGGAAAATGATGGGAACTACACAAACTTTACTCATCAATTTCAACATTCCATTTCACCATCATCATGCAAATACACTCTGCTATTCACGACAACACTACACACTACACAACACATACTACTCAATCAATCAATCACTCACTCAATCACTCACTCAATCACACACTCACTCACACACTCAAACAATCAATCACACAACCACTCACCACTCATCACCCCGTGTCAATCCATTCACCACcca ] [-] EMBL CD087769 [ ACTACACAAAACTTACTCATCAATTTCAACATTCCATTTCATCATCATCATGCAAATACACTCTGCTATTCACGACAACACTACACACTACACAACACATACTACTCAATCAATCACTCACTCACTCAATCACTCACTCAATCACACACTCACTCACACACTCAACCAATCAACCACACAACCACTCACCACTCATCACCCCGTGTCAATCCATTCACCACTGTCTGCTTCGACAAACTACGCAGTGTAACACGTTCAGATGATGAGTCAGTGAGGGAGAGTGTGTTTCATCCTGTGTGTTTGACACTTGTCCACCCAATGTGTGTGCATG ] consensusID : consensus_10121#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence [CACTCTGCTATTCACGACAACACTACACACTACACTACACATACTACTCACTCACTCAGTCACTCACTCACTCACTCAATCAATCAATCAATCACTCACTCACTCAATCAATCAATCAATCAATCACTCACACACTCAATCAATCAACCACACAACCACTCACCACTCATCACCCCGTGTCAATCCATCCACCACTGTCTGCTTCGACAAACTACACAGTGTAACACGTTGAGATGATGAGTCAGTGAGGGAGAGTGTGTTTCATCCTGTCTGTTTGACACTTGTCCACTCATTGTGTCTGCATGCCATCCCAAGTGGTACTGAATCAAGTTCACACTGAGGTAAGCAGCAATCGGCACACGTGACTACAGTAGTAGTTGGATACAGTGAGGAGACGATGTTGTGTGTGAGTGGGACTAGGCAAGTGACTGTGACTGGTCGGTGTTGTGAATGAATGAAATGAAGTGTGCAAGTAACAGGGGATCACGGGAGTGAGAATGTGGAGAGAGTGACA] [-] EMBL CD084753 [CACTCTGCTATTCACGACAACACTACACACTACACTACACATACTACTCACTCACTCAGTCACTCACTCACTCACTCAATCAATCAATCAATCACTCACTCACTCAATCAATCAATCAATCAATCACTCACACACTCAATCAATCAACCACACAACCACTCACCACTCATCACCCCGTGTCAATCCATCCACCACTGTCTGCTTCGACAAACTACACAGTGTAACACGTTGAGATGATGAGTCAGTGAGGGAGAGTGTGTTTCATCCTGTCTGTTTGACACTTGTCCACTCATTGTGTCTGCATGCCATCCCAAGTGGTACTGAATCAAGTTCACACTGAGGTAAGCAGCAATCGGCACACGTGACTACAGTAGTAGTTGGATACAGTGAGGAGACGATGTTGTGTGTGAGTGGGACTAGGCAAGTGACTGTGACTGGTCGGTGTTGTGAATGAATGAAATGAAGTGTGCAAGTAACAGGGGATCACGGGAGTGAGAATGTGGAGAGAGTGACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10121#0 ACGAATTAAGTGAAGTGTGGAAGTAACAGGGGACGGAGTGAGAATGTGGAGAGTGTGACG 60 consensus_10121#1 ------------------------------------------------------------ consensus_10121#2 ------------------------------------------------------------ consensus_10121#0 TGGTGATTGTGGTTTTGTTTGTGGTTGTAGTACTGTTTTTGTTTTTTCGTTGTATTTGTA 120 consensus_10121#1 ------------------------------------------------------------ consensus_10121#2 --------------------------------------------------CACTCTGCTA 10 consensus_10121#0 GTTGTAATTGTAATAGTTGTAGTGTGGTGAACAACAACAACAACAACAAGAACAAGAACA 180 consensus_10121#1 ------------------------------------------------------------ consensus_10121#2 TTCACGACAACACTACACACTACACTACACATACTACTCACTCACTCAGTCACTCACTCA 70 consensus_10121#0 AGAACAAGAACAAGAAGACGAGTGGGGACAATCCAATGTATTTGAAGTGAAAATTGCAGA 240 consensus_10121#1 ------------------------------------------------------------ consensus_10121#2 CTCACTCAATCAATCAATCAATCACTCACTCACTCAATCAATCAATCAATCAATCACTCA 130 consensus_10121#0 ATGTCTTAGTAAAATGTGAGAGGAAAACAGTAAATACTTAATTTGCAAAATATCAATGAA 300 consensus_10121#1 ------------------------------------------------------------ consensus_10121#2 CACACTCAATCAATCA-ACCACACAACCACTCACCACTCA--TCACCCCGTGTCAATCCA 187 consensus_10121#0 CCT-TGACTGTTCCTTTGCGAATGTCAATCAATCGTCTCACAATTCACTGTTCCTTCATT 359 consensus_10121#1 ------------------------------------------------------------ consensus_10121#2 TCCACCACTGTCTGCTT-CGACAAACTACACAGTGTAACACGTTGAGATGATGAGTCAGT 246 consensus_10121#0 TCAATACCAATGGCTTTCTGTTCACGTTCTTTCCTCCTCCAACTTGACGAATTTCTGCTG 419 consensus_10121#1 ------------------------------------------------------------ consensus_10121#2 G-------AGGGAGAGTGTGTTT-CATCCTGTCTGTTTGACACTTGTCCACTCATTG-TG 297 consensus_10121#0 CCAGACATTCTATTCCTGACTCGCCATATATACTACTTATATAGATATAAGTAGTATTAG 479 consensus_10121#1 ------------------------------------------------------------ consensus_10121#2 TCTG-CATGCCAT-CCCAAGTGGTACTGAATCAAGTTCACACTGAGGTAAGCAGCAATCG 355 consensus_10121#0 TAGTAGTAGTAGTAGTAGTATTCGTTGTTATTGATGAGTGTGATGATGTTGGGCTGTGAT 539 consensus_10121#1 ------------------------------------------------------------ consensus_10121#2 --GCACACGTGACTACAGTAGTAGTTGGATACAGTGAG-GAGACGATGTTGTG-TGTGA- 410 consensus_10121#0 TGTGTGATTGTGGTAGTATGTATGTGATAGTGGGTATTGCGTGTGA-TGTGAAAATGTGA 598 consensus_10121#1 ------------------------------------------------------------ consensus_10121#2 -GTGGGACTAGGCAAGTGACTGTG-ACTGGTCGGTGTTGTGAATGAATGAAATGAAGTG- 467 consensus_10121#0 TGTTAGTGGTTGTGAATAGGTATGTTGATGGTGGGATTCGAACCGGCGCCGTTTAAAGGT 658 consensus_10121#1 ------------TGAATAGGTATGTTGATGGTGGGATTCGAACCGGCGCCGTTTAAAGGT 48 consensus_10121#2 TGCAAGTAACAGGGGATCACGGGAGTGAGAATGTGGAGAGAGT-GACA------------ 514 * ** *** ** * ** * * consensus_10121#0 GGTTCCCCATCCAACTCCTTAGACCACTCGGCCACACGGAAAATGATTGGAACTACACAA 718 consensus_10121#1 GGTTCCCCATCCAACGCCTTAGACCACTCGACCACACGGAAAATGATTGGAACTACACAA 108 consensus_10121#2 ------------------------------------------------------------ consensus_10121#0 AACTTACTCATCAATTTCAACATTCCATTTCACCATCATCATGCGAATACACTCTGCTAT 778 consensus_10121#1 AACTTACTCATCAATTTCAACATTCCATTTCACCATCATCATGCAAATACACTCTGCTAT 168 consensus_10121#2 ------------------------------------------------------------ consensus_10121#0 TCACGACAACACTACACACTACACAACACATACTACTC---------------------- 816 consensus_10121#1 TCACGACAACACTACACACTACACAACACATACTACTCACTCACTCACTCACTCACTCAA 228 consensus_10121#2 ------------------------------------------------------------ consensus_10121#0 -----------------CACTCAATCACACACTCAATCAATCAACCACACAACCACTCAC 859 consensus_10121#1 TCACTCACTCACTCACACACTCACTCACACACTCAATCAATCAACCACACAACCACTCAC 288 consensus_10121#2 ------------------------------------------------------------ consensus_10121#0 CACTCATCACCCCGTGTCAATCCATCCACCACTGTCTGCTTCGACAAACTACGCAGTGTA 919 consensus_10121#1 CACTCATCACCCCGTGTCAATCCATCCACCACTGTCTGCTTCGACAAACTACGCAGTGTA 348 consensus_10121#2 ------------------------------------------------------------ consensus_10121#0 ACACGTTCACACGATGAGTCAGTGAGGGAGAGTGTGTTTCATCCTGTCTGTTTGACACTT 979 consensus_10121#1 ACACGTTCACACGATGAGTCAGTGAGGGAGAGTGTGTTTCATCCTGTCTGTTTGACACTT 408 consensus_10121#2 ------------------------------------------------------------ consensus_10121#0 GTCCACTCAATGTATCTGCATGCCATCCCACGTGCTGAATCAAG---------------- 1023 consensus_10121#1 GTCCACTCAATGTGTCTGCATGCCATCCCACGTGCTGAATCAAGTTCACACTGAGTTAAG 468 consensus_10121#2 ------------------------------------------------------------ consensus_10121#0 ------------------------------------------------------------ consensus_10121#1 CAGCAATCGGCACACATCACAGTAGTAGTTGGATACAGTGAGGAGACGATGTTGTGTGTG 528 consensus_10121#2 ------------------------------------------------------------ consensus_10121#0 --------------- consensus_10121#1 AGTGGGACTAGGCAA 543 consensus_10121#2 --------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||