These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10127#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 796 fasta sequence [TGGATATGGCCAATCCTCTTACTTCTGTCATGGATTTGATGCGACGTCTACCGCCTCAAAAAATCAATCATACTTTGGTGGATGTAATCTCGCTTAAACCAGAACACTGTGAAGATATTTTAAGCTCAGTGGATCAACCTTTAAAGATCGCGAGAGATGTCCATGCTGATCGTGATTATTTATTATGCGATTATAACAGAGATGGTGATTCTTATCGATCACCTTGGTCAAATACCTACGACCCACCACTAGAAGATGGAGCTATGCCAAGTGAAAGTCTTCGTAAACGAGAAATAGAAATTAATACAGCTTTTGATCAATACAGAGAAATGTATTATGAGGGAGGGATATCTTCAGTTTACCTATGGGATATGGATCATGGATTCGCTGGGGTTATTCTGAT-AAAGAAAGCTGGTAATGCTAAGTTGGCTAGTGGTTGTTGGGATTCAATACATGTTATTGATGTTGTTGAAAGGCCTTCTGCTAAAATATCCTTATATAAGCTTACAAGTACAGTTATGCTATGGCTTCAAACCCAACGAGAATCTGCAGGTTATTTCAATCTTGGTGGTAGTCTTTCAAGATTCAGTGAGCGTGAACTTCCTTTGGGAGACTCAGGTGTTCCAATAACTACTTCACATATTGTTAATATTGGCCGTATGGTAGAAGATGTTGAAAACTCAATCCGCTCAACGCTCAATGAAGTATATTTCGGTACAACAAAAAATATTGTTGATTCATTACGTTCTATCGTACCTGCCTCAGAAGAGGAAAAACGTCGGCGTTTAGTTCAAGA] [+] EMBL CD078654 [TGGATATGGCCAATCCTCTTACTTCTGTCATGGATTTGATGCGACGTCTACCGCCTCAAAAAATCAATCATACTTTGGTGGATGTAATCTCGCTTAAACCAGAACACTGTGAAGATATTTTAAGCTCAGTGGATCAACCTTTAAAGATCGCGAGAGATGTCCATGCTGATCGTGATTATTTATTATGCGATTATAACAGAGATGGTGATTCTTATCGATCACCTTGGTCAAATACCTACGACCCACCACTAGAAGATGGAGCTATGCCAAGTGAAAGTCTTCGTAAACGAGAAATAGAAATTAATACAGCTTTTGATCAATACAGAGAAATGTATTATGAGGGAGGGATATCTTCAGTTTACCTATGGGATATGGATCATGGATTCGCTGGGGTTATTCTGAT AAAGAAAGCTGGTAATGCTAAGTTGGCTAGTGGTTGTTGGGATTCAATACATGTTATTGATGTTGTTGAAAGGCCTTCTGCTAAAATATCCTTATATAAGCTTACAAGTACAGTTATGCTATGGCTTCANACCCAACGAGAATCTGCAGGTTATTTCAATCTTGGTGGTAGTCTTTCAAGATTC ] [+] EMBL AI976041 [ CCAATCCTCTTACTTCTGTCATGGATTTGATGCGACGTCTACCGCCTCAAAAAATCAATCATACTTTGGTGGATGTAATCTCGCTTAAACCAGAACACTGTGAAGATATTTTAAGCTCAGTGGATCAACCTTTAAAGATCGCGAGAGATGTCCATGCTGATCGTGATTATTTATTATGCGATTATAACAGAGATGGTGATTCTTATCGATCACCTTGGTCAAATACCTACGACCCACCACTAGAAGATGGAGCTATGCCAAGTGAAAGTCTTCGTAAACGAGAAATAGAAATTAATACAGCTTTTGATCAATACAGAGAAATGTATTATGAGGGAGGGATATCTTCAGCTCACCTATGGGATATGGATCATGGATTCGCTGGGGTTATTCTGAT AAAGAAAGCTGGTAATGCTAAGTTGGCTAGTGGTTGTTGGGATTCAATACATGTTATTGATGTTGTTGAAAGGCCTTCTGCTAAAATATCCTTATATAAGCTTACAAGTACAGTTATGCTATGGCTTCAAACCCAACGAGAATCTGCAGGTTATT ] [+] EMBL CD195643 [ ATCATACTTTGGTGGATGTAATCTCGCTTAAACCAGAACACTGTGAAGATATTTTAAGCTCAGTGGATCAACCTTTAAAGATCGCGGGAGATGTCCATGCTGATCGTGATTATTTATTATGCGATTATAACAGAGATGGTGATTCTTATCGATCACCTTGGTCAAATACCTACGACCCGCCACTAGAAGATGGAGCTATGCCAAGTGAAAGTCTTCGTAAACGAGAAATAGAAATTAATACAGCTTTTGATCAATACAGAGAAATGTATTATGAGGGAGGGATATCTTCAGTTTACCTATGNGATATGGATCATGGA ] [+] EMBL CD121945 [ CCCACCACTAGAAGATGGAGCTATGCCAAGTGAAAGTCTTCGTAAACGAGAAATAGAAATTAATACAGCTTTTGATCAATACAGAGAAATGTATTATGAGGGAGGGATATCTTCAGTTTACCTATGGGATATGGATCATGGATTCGCTGGGGTTATTCTGAT AAAGAAAGCTGGTAATGCTAAGTTGGCTAGTGGTTGTTGGGATTCAATACATGTTATTGATGTTGTTGAAAGGCCTTCTGCTAAAATATCCTTATATAAGCTTACAAGTACAGTTATGCTATGGCTTCAAACCCAACGAGAATCTGCAGGTTATTTCAATCTTGGTGGTAGTCTTTCAAGATTCAGTGAGCGTGAACTTCCTTTGGGAGACTCAGGTGTTCCAATAACTACTTCACA ] [-] EMBL CD122030 [ ATGGATCATGGATTCGCTGGGGTTATTCTGAT AAAGAAAGCTGGTAATGCTAAGTTGGCTAGTGTTTGTTGGGATTCAATACATGTTATTGATGTTGTTGAAAGGCCTTCTGCTAAAATATCCTTATATAAGCTTACAAGTACAGTTATGCTATGGCTACAAACCCAACGAAAATCTGCAGGTTATTTCAATCTTGGTGGTAGTCTTTCAAGATTCAGTGAGCGTGAACTTCCTTTGGGAGACTCAGGTGTTCCAATAACTACTTCACATATTGTTAATATTGGCCGTATGGTAGAAGATGTTGAAAACTCAATCCGCTCAACGCTCAATGAAGTATATTTCGGTACAACAAAAAATATTGTTGATTCATTACGTTCTATCGTACCTGCCTCAGAAGAGGAAAAACGTCGGCGTTTAGTTCAAGA] [-] EMBL CD121822 [ CATGGATTCGCTGGGGTTATTCTGAT AAAGAAAGCTGGTAATGCTAAGTTGGCTAGTGGTTGTTGGGATTCAATACATGTTATTGATGTTGTTGAGAGGCCTTCTGCTAAAATATCCTTATATAAGCTTACAAGTACAGTTATGCTATGGCTTCAAACCCAACGAGAATCTGCAGGTTATTTCAATCTTGGTGGTAGTCTTTCAAGATTCAGTGAGCGTGAACTTCCTTTGGGAGACTCAGGTGTTCCAATAACTACTTCACATATTGTTAATATTGGCCGTATGGTAGAAGATGTTGAAAACTCAATCCGCTCAACGCTCAATGAAGTATATTTCGGTACAACAAAAAATATTGTTGATTCATTACGTTCTATCGTACCTGCCTCAGAAGAGGAAAAACGTCGGCGTTTAGTTCAAGA] [-] EMBL CD121871 [ GTTATTCTGATAAAAGAAAGCTGTTAATGCTAAGTTGCCTAGTGTTTNTTGGGATTCAATACATGTTATTGATGTTGTTGAAAGGCCTTCTGCTAAAATATCCTTATACAAGCTTACAAGTACAGTTATGCTATGGCTTCAAACCCAACGAGAATCTGCAGGTTATTTCAATCTTGGTGGTAGTCTTTCAAGATACAGTGAGCGTGAACTTCCTTTGGGAGACTCAGGTGTTCCAATAACTACTTCACATATTGTTAATATTGGCCGTATGGTAGAAGATGTTGAAAACTCAATCCGCTCAACGCTCAATGAAGTATATTTCGGTACAACAAAAAATATTGTTGATTCATTACGTTCTATCGTACCTGCCTCAGAAGAGGAAAAACGTCGGCGTTTAGTTCAAGA] [-] EMBL CD122042 [ TATTCTGAT AAAGAAAGCTGGTAATGCTAAGTTGGCTAGTGTTTGTTGGGATTCAATACATGTTATTGATGTTGTTGAAAGGCCTTCTGCTAAAATATCCTTATATAAGCTTACAAGTACAGTTATGCTATGGCTTCAAACCCAACGAGAATCTGCAGGTTATTTCAATCTTGGTGGTAGTCTTTCAAGATTCAGTGAGCGTGAACTTCCTTTGGGAGACTCAGGTGTTCCAATAACTACTTCACATATTGTTAATATTGGCCGTATGGTAGAAGATGTTGAAAACTCAATCCGCTCAACGCTCAATGAAGTATATTTCGGTACAACAAAAAATATTGTTGATTCATTACGTTCTATCGTACCTGCCTCAGAAGAGGAAAAACGTCGGCGTTTAGTTCAAGA] [-] EMBL CD122029 [ TTCTGAT AAAGAAAGCTGGTAATGCTAAGTTGGCTAGTGGTTGTTGGGATTCAATACATGTTATTGATGTTGTTGAAAGGCCTTCTGCTAAAATATCCTTATATAAGCTTACAAGTACAGTTATGCTATGGCTTCAAACCCAACGAGAATCTGCAGGTTATTTCAATCTTGGTGGTAGTCTTTCAAGATTCAGTGAGCGTGAACTTCCTTTGGGAGACTCAGGTGTTCCAATAACTACTTCACATATTGTTAATATTGGCCGTATGGTAGAAGATGTTGAAAACTCAATCCGCTCAACGCTCAATGAAGTATATTTCGGTACAACAAAAAATATTGTTGATTCATTACGTTCTATCGTACCTGCCTCAGAAGAGGAAAAACGTCGGCGTTTAGTTCAAGA] consensusID : consensus_10127#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 520 fasta sequence [CACATTCAAATCCTTCCTACACCTAATAACTCTCTTATCTCCAACGTTGGACCCAATTAGATCACATCGCTATCAGCCACCGATGGGAGGGGCTCGATAGAAGACTGTCGCTCATTCCAGCATCTGCAGTTATGCTGTCTTCTCTCAAGGAAGGAAGGGGTTAGAAAAGGTCAACCCTAAAAGCGTCACACCTTACCTCACGGATTTCCGTCTCTTCCGGTAAGGCCCTTTAAAGAACGGAGCTAACACGTCAAAAAACTCCCACAAAAAGGCCGTGCGTGACCGACCTCAAACAGTTGTCCCTCGGGCTCCGCGGTCACGCTCTCAGGTCGTTAAGACCAATATTAATTCCAAATATCTTCTCAGGTCTCTCAAGAAATACCCTTTGACGGTTTGGGCAGCCGGAAAGTGATATCAGCCCTCATACCCGTAACAACACACGAGACCAAGTTGGTCACATTCAAATCCTTCCTACACCTAATAACTCTCTTATCTCCACAACTAATCCTTCTCATGTCCC] [+] EMBL CD164550 [CACATTCAAATCCTTCCTACACCTAATAACTCTCTTATCTCCAACGTTGGACCCAATTAGATCACATCGCTATCAGCCACCGATGGGAGGGGCTCGATAGAAGACTGTCGCTCATTCCAGCATCTGCAGTTATGCTGTCTTCTCTCAAGGAAGGAAGGGGTTAGAAAAGGTCAACCCTAAAAGCGTCACACCTTACCTCACGGATTTCCGTCTCTTCCGGTAAGGCCCTTTAAAGAACGGAGCTAACACGTCAAAAAACTCCCACAAAAAGGCCGTGCGTGACCGACCTCAAACAGTTGTCCCTCGGGCTCCGCGGTCACGCTCTCAGGTCGTTAAGACCAATATTAATTCCAAATAT ] [+] EMBL CD149766 [ AAGCGTCACACCTTACCTCACGGATTTCCGTCTCTTCCGGTAAGGCCCTTTAAAGAACGGAGCTAACACGTCAAAAAACTCCCACAAAAAGGCCGTGCGTGACCGACCTCAAACAGTTGTCCCTCGGGCTCCGCGGTCACGCTCTCAGGTCGTTAAGACCAATATTAA TCCAAATCTCTTCTCAGGTCTCTCAAGAAATACCCTTTGACGGTTTGGGCAGCCGGAAAGTGATATCAGCCCTCATACCCGTAACAACACACGAGACCAAGTTGGTCACATTCAAATCCTTCCTACACCTAATAACTCTCTTATCTCCACAACTAATCCTTCTCATGTCCC] consensusID : consensus_10127#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 218 fasta sequence [CACCACTTGAGGTTGTAAAATCATATGACAGTTCGCCATACATGTAGTTTACAACGTGGTTTCAGGAGACCGGGAGTAACGTTCCGCGTACTCGGATTGTTTGCATTAGCGGTGCGGTGATTAAAGAACGTGAGAAGGGTTAGTCGTGAAGATAAGAGAGTTATTAGATGGAGGAAGGATTTGAATGTGACCAACTTGGTCTCGTATGTTGTTACGGG] [+] EMBL CD192429 [CACCACTTGAGGTTGTAAAATCATATGACAGTTCGCCATACATGTAGTTTACAACGTGGTTTCAGGAGACCGGGAGTAACGTTCCGCGTACTCGGATTGTTTGCATTAGCGGTGCGGTGATTAAAGAACGTGAGAAGGGTTAGTCGTGAAGATAAGAGAGTTATTAGATGGAGGAAGGATTTGAATGTGACCAACTTGGTCTCGTATGTTGTTACGGG] consensusID : consensus_10127#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 135 fasta sequence [GAAGTGATATTAGCCCTCATACCCGTAACAGCACACGAGACCATGTTGGTCACTTTCAAATCCTTCCTACTCCTAATAACTGTCTTATCTCCACGACTAACCCTTCCCACGTCCTTTTATCACCCCGCACCGCTA] [+] EMBL CD157569 [GAAGTGATATTAGCCCTCATACCCGTAACAGCACACGAGACCATGTTGGTCACTTTCAAATCCTTCCTACTCCTAATAACTGTCTTATCTCCACGACTAACCCTTCCCACGTCCTTTTATCACCCCGCACCGCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10127#1 ----CACATTCAAATCCTTCCTACACCTAATAACTCTCTTATCTCCAACGTTGGACCCAA 56 consensus_10127#3 ------------------------------------------------------------ consensus_10127#2 ------------------------------------------------------------ consensus_10127#0 TGGATATGGCCAATCCTCTTACTTCTGTCATGGATTTGATGCGACGTCTACCGCCTCAAA 60 consensus_10127#1 TTAGATCACATCGCTATCAGCCACCGATGGGAGGGGCTCGATAGAAGACTGTCGCTCATT 116 consensus_10127#3 ------------------------------------------------------------ consensus_10127#2 ------------------------------------------------------------ consensus_10127#0 AAATCAATCATACTTTGGTGGATGTAATCTCGCTTAAACCAGAACACTGTGAAGATATTT 120 consensus_10127#1 CCAGCATCTGCAGTTATGCTGTCTTCTCTCAAGGAAGGAAGGGGTTAGAAAAGGTCAACC 176 consensus_10127#3 ------------------------------------------------------------ consensus_10127#2 ------------------------------------------------------------ consensus_10127#0 TAAGCTCAGTGGATCAACCTTTAAAGATCGCGAGAGATGTCCATGCTGATCGTGATTATT 180 consensus_10127#1 CTAAAAGCGTCACACCTTACCTCACGGATTTCCGTCTCTTCCGGTAAGGCCCTTTAAAGA 236 consensus_10127#3 ------------------------------------------------------------ consensus_10127#2 ------------------------------------------------------------ consensus_10127#0 TATTATGCGATTATAACAGAGATGGTGATTCTTATCGATCACCTTGGTCAAATACCTACG 240 consensus_10127#1 ACGGAGCTAACACGTCAAAAAACTCCCACAAAAAGGCCGTGCGTGACCGACCTCAAACAG 296 consensus_10127#3 ------------------------------------------------------------ consensus_10127#2 ------------------------------------------------------------ consensus_10127#0 ACCCACCACTAGAAGATGGAGCTATGCCAAGTGAAAGTCTTCGTAAACGAGAAATAGAAA 300 consensus_10127#1 TTGTCCCTCGGGCTCCGCGGTCACGCTCTCAGGTCGTTAAGACCAATATTAATTCCAAAT 356 consensus_10127#3 ------------------------------------------------------------ consensus_10127#2 --------------CACCACTTGAGGTTGTAAAATCATATGACAGTTCGCCATACATGTA 46 consensus_10127#0 TTAATACAGCTTTTGATCAATACAGAGAAATGTATTATGAGGGAGGGATATCTTCAGTTT 360 consensus_10127#1 ATCTTCTCAGG-TCTCTCAAGAAATACCCTTTGACGGTTTGGGCAGCCGGAAAGTG-ATA 414 consensus_10127#3 --------------------------------------------------GAAGTG-ATA 9 consensus_10127#2 GTTTACAACGT-GGTTTCAGGAGACCGGGAGTAACGTTCCGCGTACTCGGATTGTTTGCA 105 consensus_10127#0 ACCTATGGGATATGGATCATGGATTCGCTGGGGTTATTCTGATAAAGAAAGCTGGTAATG 420 * consensus_10127#1 TCAGCCCTCATACCCGTAACAACACACGAGACCAAGTTGGTCACAT---TCAAATCCTTC 471 consensus_10127#3 TTAGCCCTCATACCCGTAACAGCACACGAGACCATGTTGGTCACTT---TCAAATCCTTC 66 consensus_10127#2 TTAGCGGT-GCGGTGATTAAAGAACGTGAGAA-GGGTTAGTCGTGAAGATAAGAGAGTTA 163 consensus_10127#0 CTAAGTTGGCTAGTGGTTGTTGGGATTCAATACATGTTATTGATGTTGTTGAAAGGCCTT 480 * * * *** * * * * * consensus_10127#1 CTACACCTAATAACTCTCTTATCTCCACAACTAATCCT-TCTCATGTCCC---------- 520 consensus_10127#3 CTACTCCTAATAACTGTCTTATCTCCACGACTAACCCT-TCCCACGTCCTTTTATCACCC 125 consensus_10127#2 TTAGATGGAGGAAGGATTTGAAT---GTGACCAACTTGGTCTCGTATGTTGTTACGGG-- 218 consensus_10127#0 CTGCTAAAATATCCTTATATAAGCTTACAAGTACAGTTATGCTATGGCTTCAAACCCAAC 540 * * * * * * consensus_10127#1 ------------------------------------------------------------ consensus_10127#3 CGCACCGCTA-------------------------------------------------- 135 consensus_10127#2 ------------------------------------------------------------ consensus_10127#0 GAGAATCTGCAGGTTATTTCAATCTTGGTGGTAGTCTTTCAAGATTCAGTGAGCGTGAAC 600 consensus_10127#1 ------------------------------------------------------------ consensus_10127#3 ------------------------------------------------------------ consensus_10127#2 ------------------------------------------------------------ consensus_10127#0 TTCCTTTGGGAGACTCAGGTGTTCCAATAACTACTTCACATATTGTTAATATTGGCCGTA 660 consensus_10127#1 ------------------------------------------------------------ consensus_10127#3 ------------------------------------------------------------ consensus_10127#2 ------------------------------------------------------------ consensus_10127#0 TGGTAGAAGATGTTGAAAACTCAATCCGCTCAACGCTCAATGAAGTATATTTCGGTACAA 720 consensus_10127#1 ------------------------------------------------------------ consensus_10127#3 ------------------------------------------------------------ consensus_10127#2 ------------------------------------------------------------ consensus_10127#0 CAAAAAATATTGTTGATTCATTACGTTCTATCGTACCTGCCTCAGAAGAGGAAAAACGTC 780 consensus_10127#1 ---------------- consensus_10127#3 ---------------- consensus_10127#2 ---------------- consensus_10127#0 GGCGTTTAGTTCAAGA 796 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||