These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10134#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 821 fasta sequence [TCAATTAAAATCCACTGAAGTCTTTCCACCAAATGGAAACTGAATATGATTCTTCCGAAAGGTGGTAAGGATAATCTAGGTAGAAATGCGTTGGAAATCTACGGGTGTAAACTGAGAGTAGTTTTTGTTAGCACAATTTTAGATTGTAATCTGAGTGATTGGTATAGGTGAGTAGTCTTCTTCGTTCAGTAATTTTACCATTGCATGAATAATTGACATAATATCTATGTTCGTTATCGCAATAGAACATGACTTGCCTTGACTCGATATACTCATGAAAGTTCTATAATCTGAAATTATCTGATTGACATCATTACATCGTATCAACAATTCATACTCAATAGGTTCCGATAAAGTCAAGGTACCATTTTATACGTCACACTGTGGGTAAAATATGCCGAA-TCCAGTGTATGCGTAACTACTGGATGCTTTGGTAATGTGAAGTCATTATTTGATGTGTAGAAATACGTTTACACAACCTATGAGAAATTAACTATGTACAAAAATTGCTGGCGGAATGAAAAGTCGAAACCACTGAATAACA-AACTCACATGTACTACGAGGATATTGGAATAATGATGTGAAGAGATTATTTGA-TGCTGAAAATGAAAGGGAGAAAATAAACGATGTAAAGAATCTGACTAGAATCTCATGTAAATTGCTATTTTCAATTTCAGAGAACGTCAAATTTACTATTTTTGTTTTATGGAGAGGAAAACAATTTGAATTAAGCCATTCTGATTGTTGAAGTAAAAGTAATTGAAGATGACGATGTTCAGAAGACTGAAAATGTGATATTAATTTGCATTCAGCGAAATTGC] [-] EMBL CD149370 [TCAATTAAAATCCACTGAAGTCTTTCCACCAAATGGAAACTGAATATGATTCTTCCGAAAGGTGGTAAGGATAATCTAGGTAGAAATGCGTTGGAAATCTACGGGTGTAAACTGAGAGTAGTTTTTGTTAGCACAATTTTAGATTGTAATCTGAGTGATTGGTATAGGTGAGTAGTCTTCTTCGTTCAGTAATTTTACCATTGCATGAATAATTGACATAATATCTATGTTCGTTATCGCAATAGAACATGACTTGCCTTGACTCGATATACTCATGAAAGTTCTATAATCTGAAATTATCTGATTGACATCATTACATCGTATCAACAATTCATACTCAATAGGTTCCGATAAAGTCAAGGTACCATTTTATACGTCACACTGTGGGTAAAATATGCCGAA TCCAGTGTATG ] [+] EMBL CD117177 [ TTGGAAATCTACGGGTGTAAACTGAGAGTAGTTTTTGTTAGCACAATTTTAGATTGTAATCTGAGTGATTGGTATAGGTGAGTAGTCTTCTTCGTTCAGTAATTTTACCATTGCATGAATAATTGACATAATATCTATGTTCGTTATCGCAATAGAACATGACTTGCCTTGACTCGATATACTCATGAAAGTTCTATAATCTGAAATTATCTGATTGACATCATTACATCGTATCAACAATTCATACTCAATAGGTTCCGATAAAGTCAAGGTACCATTTTATACGTCACACTGTGGGTAAAATATGCCGAA TCCAGTGTATGCGTAACTACTGGATGCTTTGGTAATGTGAAGTCATTATTTGATGTGTAGAAATACGTTTACACA ] [+] EMBL CD117196 [ TTGGAAATCTACGGGTGTAAACTGAGAGTAGTTTTTGTTAGCACAATTTTAGATTGTAATCTGAGTGATTGGTATAGGTGAGTAGTCTTCTTCGTTCAGTAATTTTACCATTGCATGAATAATTGACATAATATCTATGTTCGTTATCGCAATAGAACATGACTTGCCTTGACTCGATATACTCATGAAAGTTCTATAATCTGAAATTATCTGATTGACATCATTACATCGTATCAACAATTCATACTCAATAGGTTCCGATAAAGTCAAGGTACCATTTTATACGTCACACTGTGGGTAAAATATGCCGAA TCCAGTGTATGCGTAACTACTGGATGCTTTGGTAATGTGAAGTCATTATTTGATGTGTAGAAATACGTTTACACA ] [+] EMBL CD117178 [ TTGGAAATCTACGGGTGTAAACTGAGAGTAGTTTTTGTTAGCACAATTTTAGATTGTAATCTGAGTGATTGGTATAGGTGAGTAGTCTTCTTCGTTCAGTAATTTTACCATTGCATGAATAATTGACATAATATCTATGTTCGTTATCGCAATAGAACATGACTTGCCTTGACTCGATATACTCATGAAAGTTCTATAATCTGAAATTATCTGATTGACATCATTACATCGTATCAACAATTCATACTCAATAGGTTCCGATAAAGTCAAGGTACCATTTTATACGTCACACTGTGGGTAAAATATGCCGAA TCCAGTGTATGCGTAACTACTGGATGCTTTGGTAATGTGAAGTCATTATTTGATGTGTAGAAATACGTTTACACA ] [+] EMBL CD112072 [ TGCCGAA TCCAGTGTATGCGTAACTACTGGATGCTTTGGTAATGTGAAGTCATTATTTGATGTGTAGAAATACGTTTACACAACCTATGAGAAATTAACTATGTACAAAAATTGCTGGCGGAATGAAAAGTCGAAACCACTGAATAACA AACTCACATGTACTACGAGGATATTGGAATAATGATGTGAAGAGATTATTTGA TGCTGAAAATGAAAGGGAGAAAATAAACGATGTAAAGAATCTGACTAGAATCTCATGTAAATTGCTATTTTCAATTTCAGAGAACGTCAAATTTACTATTTTTGTTTTATGGAGAGGAAAACAATTTGAATTAAGCCATTCTGATTGTTGAAGTAAAAGTAATTGAAGATGACGATGTTCAGAAGACTGACAATGTGATATTAATTTGCATTCAGCGAAATTGC] [+] EMBL CD112555 [ TGCCGAACTCCAGTGTATGC TTATTACTGGATGCTCTGGTAATGTGAAGTCATTATTTGATGTGTAGAATTACGTTTACACAACCTATGAGAGATTAATTATGTACAAAAATTGCTGGCGTAATGAAAAGTCGAGACTACTGAATACCATGACGCACATGTACTACGAGGATATTGGAATAATGATGTGAAGAGATTATTCGAGTGCTGGAAATGAACGGGAGAACATAAACGATGTAAAGAATCTGACTAGAATCTCATGTAAATTGCTATTTTCAATTTCAGAGAACGTCAAATTTACTATTTTTGTTTTATGGAGAGGAAAACAATTTGAATTAAGCCATTCTGATTGTTGAAGTAAAAGTTATTGAAGATGACGATGTTCAGAAGACTGAAAATGTGATATTAATT ] [+] EMBL CD112296 [ AAGAATCTGACTAGAATCTCATGTAACTTGCTATTTTCAATTTCAGAGAACGTCAAATTTACTATTTTTGTTTTATGGAGAGGAAAACAATTTGAATTAAGCCATTCTGATTGTTGAAGTAAAAGTAATTGAAGATGACGATGTTCAGAAGACTGAAAATGTGATATTAATTTGCATTCAGCGAA ] consensusID : consensus_10134#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 807 fasta sequence [ACGTTAAGCACTATTTCGTGAATACCACTTTCCTTTCTGTACTTATGAATAAACTCTTTGTCTTCAATTTCTCTATTTCTCAACGGCATGGAAATGAAATTGTCACGATTGTGAGTTTACTCATAATATTTACAATGATACGAAAATATTTTGTTGAGTTGACACCTTCTTGTTAGTTCGTGGAGTGTGAAATAACTAGTTCATTCTGTTTACATACTAGGTGACACTCTACCGGAAATGTGTTCTGTGGATCAATTTGTTGTGTTTGTGATGTAGGTTCGTCCTGAAGACAGATGTCATTTGATGATGAGGAGAGACTGTGTCAAAATTTCTCTAGTTGAACGTTCAGAGTACTAGTAAACATTCGGAAAGATTTGAGAATGAATAACGTCGCTTTCCATGTATTGTGCTTCGGCGCCAACGAATTTCCGAAATTTTACACACGTGGTCACGATATTGTTTTCATTGTTTTGTAGTAAGCAAAAGCAAAATATAAAAAACAAGTGGGGAAAGTGAACAATGAACGACCAACAATCCGTACCAAACCAGCTGTGATTGTCACGTCGAAGAATAAGAACTCAGCTAATAATATGACAGTATCTGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCAAATAATCTCTTCACATCATTATTCCAATATCCTCGTAGTACATCGCATTAACGAATGAAATGCTGAGATCGGATGAACACTGGAGTGTACAGTCTGAATGACTCTTAAC] [+] EMBL CD153849 [ACGTTAAGCACTATTTCGTGAATACCACTTTCCTTTCTGTACTTATGAATAAACTCTTTGTCTTCAATTTCTCTATTTCTCAACGGCATGGAAATGAAATTGTCACGATTGTGAGTTTACTCATAATATTTACAATGATACGAAAATATTTTGTTGAGTTGACACCTTCTTGTTAGTTCGTGGAGTGTGAAATAACTAGTTCATTCTGTTTACATACTAGGTGACACTCTACCGGAAATGTGTTCTGTGGATCAATTTGTTGTGTTTGTGATGTAGGTTCGTCCTGAAGACAGATGTCATTTGATGATGAGGAGAGACTGTGTCAAAATTTCTCTAGTTGAACGTTCAGAGTACTAGTAAACATTCGGAAAGATTTGAGAATGAATAACGTCGCTTTCCATGTATTGTGCTTCGGCGCCAACGAATTTCCGAAATTTTACACACGTGGTCACGATATTGTTTTCATTGTTTTGTAGTAAGCAAAAGCAAAATATAAAAAACAAGTGGGGAAAGTGAACAATGAACGACCAACAATCCGTACCAAACCAGCTGT ] [+] EMBL CD158422 [ TATAAAAAACAAGTGGGGAAAGTGAACAATGAACGACCAACAATCCGTACAAAACCAGCTGTGATTGTCACGTCGAAGAATAAGAACTCAGCTAATAATATGACAGTATCTGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATC ] [-] EMBL CD163468 [ gattcgaTATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAACATCAAATAATCTCTTCACATCATTATTCCAATATCCTCGTAGTACATCGCATTAACGAATGAAATGCTGAGATCGGATGAACACTGGAGTGTACAGTCTGAATGACTCTTAAC] consensusID : consensus_10134#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 273 fasta sequence [ATAACATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCTCTGAGAAAATTGCAGTCGATTCATTATCCGAAGTAC] [+] EMBL CD118942 [ TAACATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAA ] [+] EMBL CD163346 [agAAAATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCTCTGAGAAAATTGCAGTCGATTCATTATCCGAAGTAC] [-] EMBL CD124580 [ ATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGATAATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCCGAAGTTCCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCCG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10134#1 ACGTTAAGCACTATTTCGTGAATACCACTTTCCTTTCTGTACTTATGAATAAACTCTTTG 60 consensus_10134#2 ------------------------------------------------------------ consensus_10134#0 --------------------TCAATTAAAATCCACTGAAGTCTTTCCACCAAA---TGGA 37 consensus_10134#1 TCTTCAATTTCTCTATTTCTCAACGGCATGGAAATGAAATTGTCACGATTGTGAGTTTAC 120 consensus_10134#2 ------------------------------------------------------------ consensus_10134#0 AACTGAATATGATTCTTCCGAAAGGTGGTAAGGATAATCTAGGTAGAAATGCGTTGGAAA 97 consensus_10134#1 TCATAATATTTACAATGATACGAAAATATTTTGTTGAGTTGACACCTTCTTGTTAGTTCG 180 consensus_10134#2 ------------------------------------------------------------ consensus_10134#0 TCTACGGGTGTAAACTGAGAGTAGTTTTTGTTAGCACAATTTTAGATTGTAATCTGAGTG 157 consensus_10134#1 TGGAGTGTGAAATAACTAGTTCATTCTGTTTACATACTAGGTGACACTCTACCGGAAATG 240 consensus_10134#2 ------------------------------------------------------------ consensus_10134#0 ATTGGTAT-AGGTGAGTAGTCTTCTTCGTTCAGTAATT--TTACCATTGCATGAATAATT 214 consensus_10134#1 TGTTCTGTGGATCAATTTGTTGTGTTTGTGATGTAGGTTCGTCCTGAAGACAGATGTCAT 300 consensus_10134#2 ------------------------------------------------------------ consensus_10134#0 GACATAATATCTATGTTCGTTATCGCAATAGAACATGACTTGCCTTGACTC-GATATACT 273 consensus_10134#1 TTGATGATGAGGAGAGACTGTGTCAAAATTTCTCTAGTTGAACGTTCAGAGTACTAGTAA 360 consensus_10134#2 ------------------------------------------------------------ consensus_10134#0 CATGAAAGTTCTATAATCTGAAATTATCTGATTGACATCATTACATCGTATCAACAATTC 333 consensus_10134#1 ACATTCGGAAAGATTTGAGAATGAATAACGTCGCTTTCCATGTATTGTGCTTCGGCGCCA 420 consensus_10134#2 ------------------------------------------------------------ consensus_10134#0 ATACTCAATAGGTTCCGATAAAGT-CAAGGTACCATTTTATACGTCACACTGTGGG--TA 390 consensus_10134#1 ACGAATTTCCGAAATTTTACACACGTGGTCACGATATTGTTTTCATTGTTTTGTAGTAAG 480 consensus_10134#2 --------------------------------------------ATAACATTGCAGTCGA 16 consensus_10134#0 AAATATGCCGAATCCAGTGTATGCGTAACTACTGGAT-GCTTTGGTAATGT-GAAGTCAT 448 * * * *** consensus_10134#1 CAAAAGCAAAATATAAAA-AACAAGTGGGGAAAGTGAACAATGAACGACCAACAATCCGT 539 consensus_10134#2 TT----CAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGAT--TCAAT 70 consensus_10134#0 TATTTGATGTGTAGAAATACGTTTACACAACCTATGAGAAATTAACTATGTACA-AAAAT 507 * ** *** ** * * * consensus_10134#1 ACCAAACCAGCTGTGATTGTCACGTCGAAGAATAAGAACTCAGCTAATAATATGACAGTA 599 consensus_10134#2 ATCCGAAGTACCGCG----TCAGGCCACTGAG-AAAATTGCAGTCGATT------CAATA 119 consensus_10134#0 TGCTGGCGGAATGAAAAGTCGAAACCACTGAATAACAAACTCACATGTACTACGAGGATA 567 * * * * ** ** * * ** consensus_10134#1 TCTGAAGTACCGCGTCAGGCCACT-------GAGAAAATTGCAGTCGATTCAATATCCGA 652 consensus_10134#2 TCCGAAGTACCGCGTCAGGCCACT-------GAGAAAATTGCAGTCGATTCAATATCCGA 172 consensus_10134#0 TTGGAATAATGATGTGAAGAGATTATTTGATGCTGAAAATGAAAGGGAGAAAATAAACGA 627 * *** * ** * * * * * *** ** * ** **** *** consensus_10134#1 AGTACCGCGTCAGGCCA-----CTGAGAAAATTGCAGTCGATTCAATATCAAATAATCTC 707 consensus_10134#2 AGTACCGCGTCAGGCCA-----CTGAGAAAATTGCAGTCGATTCAATATCCGAAGTAC-- 225 consensus_10134#0 TGTAAAGAATCTGACTAGAATCTCATGTAAATTGCTATT--TTCAATTTCAGAGAACGTC 685 *** * ** * * * * ******* * ****** ** * consensus_10134#1 ---TTCAC-ATCATTATTCCAATATCCTCGTAGTACATCGCATTAA--CGAATGAAATGC 761 consensus_10134#2 -----CGC-GTCAGGCCTCTGAGAAAATTGCAGTCGATT-CATTAT--C---CGAAGTAC 273 consensus_10134#0 AAATTTACTATTTTTGTTTTATGGAGAGGAAAACAATTTGAATTAAGCCATTCTGATTGT 745 * * * * * **** * * * consensus_10134#1 TGAGATCGGATGAACACTGGAGTGTACAGTCTGAATGACTCTTAAC-------------- 807 consensus_10134#2 ------------------------------------------------------------ consensus_10134#0 TGAAGTAAAAGTAATTGAAGATGACGATGTTCAGAAGACTGAAAATGTGATATTAATTTG 805 consensus_10134#1 ---------------- consensus_10134#2 ---------------- consensus_10134#0 CATTCAGCGAAATTGC 821 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||