These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10140#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 928 fasta sequence [CCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTCGGTGGTTCACCATAATATTACCAGAAAGGCCAGTAGAAATTACAGATAATAACACTAAAAGTTGATTTAAAAACTCAATCACACGAAAAATATAAGTTATTACGAGATCTTGTCAATTAATTGGACAGATGAAAAAACACTTTACAGCTTCTTCAACAGCTCGGACGCCTCCTTCTTTGCTTCTTCAGTATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGCCAGATCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTTTTTACAATAGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTCGGTGGTTCACCGAAAAACGTACCGGAGAACTTTCGCTTTATCCATGGGAGATCTGTCACTTCGAAACACCATCTCCCAAGAGCGTGCAACGTCACAAAGTCGACAGGATCTGTTTTTATGGCTTTCACCCAATGATTCTTCATCTTAAAAGAATTTTCTATTCGCTTATTTATTCCTTCAATTTCTGATGATAAGTTCAAAAATATTCCGTACCAAGAGTTGCATTTAGAACTTTCTGGATCTATTCGAAGCCCTTCATCACAAGCTGACAGACCTTCTTCGATGTATTTTTTATACACTTGTTGATCGTTTTTACCCAATGAGTTAGCTAAATTTCTGCAGCTATGTGCCTTCCTCCTAGTTCAATTCAGGATGCTTATTATTGCTTATTGCATGAGACATATACATCGTATGCTTGTTTGTATTTTTTAGAAATCAAGCTTTTGCCATTCTGTAATTACACCGTCCATAGCGTTAATTTGCTTATCGAGGCCAACCTCGTGC] [-] EMBL CD185195 [CCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTCGGTGGTTCACCATAATATTACCAGAAAGGCCAGTAGAAATTACAGATAATAACACTAAAAGTTGATTTAAAAACTCAATCACACGAAAAATATAAGTTATTACGAGATCTTGTCAATTAATTGGACAGATGAAAAAACACTTTACAGCTTCTTCAACAGCTCGGACGCCTCCTTCTTTGCTTCTTCAGTATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGCCAGATCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAA TTTTTACAATAGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTCG ] [+] EMBL CD074287 [ tgCACCATAATATTACCAGAAAGGCCAGTAAAAATTACAGATAATAACACTAAAAGTTGATTTAAAAACTCAATCACACGAAAAATATAAGTTATTACGAGATCTTGTCAATTAATTGGACAGATGAAAAAACACTTTACAGCTTTTTCAACAGGTCGGACGCCTCCTTCTTTGCTTCTTCAGTATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGCCAGATCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTTTTTACAATAGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGCAAGTATATGTCGGTGGTTCACCGAAAAACGTACCGGAGAACTTTCGCTTTATCCATGGGAGATCTGTCACTTCGAAACACCATCTCCCAAGAGCGTGCAACGTCACAAAGTCGACAGGATCTGTTTTTATGGCTTTCACCCAATGATTCTTCATCTTAAAAGAATTTTCTATTCGCTTATTTATTCCTTCAATTTCTGATGATAAGTTCAA ] [+] EMBL CD074467 [ tgACCATAATATTACCAGAAAGGCCAGTAAAAATTACAGATAATAACACTAAAAGTTGATTTAAAAACTCAATCACACGAAAAATATAAGTTATTACGAGATCTTGTCAATTAATTGGACAGATGAAAAAACACTTTACAGCTTCTTCAACAGGTCGGACGCCTCCTTCTTTGCTTCTTCAGTATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGCCAGATCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTTTTTACAATAGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGCAAGTAGATGTCGGTGGTTCACCGAAAAACGTACCGGAGAACTTTCGCTTTATCCATGGGAGATCTGGCACTTCGAAACACCATC ] [-] EMBL CD137453 [ tactgATAATAGTACCAGAAAGGCCAGTAGAAATTACAGATAATAACACTAAAAGTTGATTTAAAAACTCAATCACACGAAAAATATAAGTTATTACGAGATCTTGTCAATTAATTGGACAGATGAAAAAACACTTTACAGCTTCTTCAACAGCTCGGACGCCTCCTTCTTTGCTTCTTCAGTAGCCAAGTCATCTTCCGTAAAT ] [-] EMBL CD130629 [ GACGCCTCCTTCTTTGCTTCTTCAGTATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGCCAGATCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTTTTTACAATAGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTCGGTGGTTCACCGAAAAACGTAGCGGCGAACTTTCGCTTTATCCATGGGAGATCTGTCACTTCGAAACA ] [-] EMBL CD184351 [ GTATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGCCAGATCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTCTTTACAATAGTTCCAGGAGCCTTTTTTTCTGAATCAAG ] [-] EMBL CD184354 [ GTATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGCCAGATCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTCTTTACAATAGTTCCAGGAGCC TTTTTTCTGAATCAAG ] [-] EMBL CD185225 [ TATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGCCAGATCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTTTTTACAACAGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTCG ] [-] EMBL CD185341 [ TATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGCCAGATCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTTTTTACAATAGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTCG ] [-] EMBL CD185234 [ cATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGCCAGATCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTTTTTACAATAGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTCG ] [-] EMBL CD080371 [ AGATGTCGGTGGTTCACCGAAAAACGTAGCGGTGAACTTTCGCTTTATCCATGGGAGATCTGTCACTTCGAAACACCATCTCCCAAGAGCGTGCAACGTCACAAAGTCGTCAGGATCTGTTTTTATGGCTTTCACCCAATGATTCTTCATCTTAAAAGAATTTTATATTGGCTTATTTATTCCTTCAATTTTTGATGATAAGTTCAAAAATATTCCGTACCAAGAGTTGCATTTAGAACTTTCTGGATCTATTCGAAGCCCTTCATCACAAGCTGACAGACCTTCTTCGATGTATTTTTTATACACTTGTTGATCGTTTTTACCCAATGAGTTAGCTAAATTTCTGCAGCTATGTGCCTTCCTCCTAGTTCAATTCAGGATGCTTATTATTGCTTATTGCATGAGACATATACATCGTATGCTTGTTTGTATTTTTTAGAAATCAAGCTTTTGCCATTCTGTAATTACACCGTCCATAGCGTTAATTTGCTTATCGAGGCCAACCTCGTGC] consensusID : consensus_10140#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence [CCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTCGGTGGTTCACCGAAAAACGTAGCGGCGAACTTTCGCTTTATCCATGGGAGATCTGTCAATTAATTGGACAGATGAAAAAACACTTTACAGCTTCTTCAACAGCTCGGACGCCTCCTTCTTTGCTTCTTCAGTATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGCCAGGTCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTTTTTACAATAGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTCG] [-] EMBL CD131429 [CCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTCGGTGGTTCACCGAAAAACGTAGCGGCGAACTTTCGCTTTATCCATGGGAGATCTGTCAATTAATTGGACAGATGAAAAAACACTTTACAGCTTCTTCAACAGCTCGGACGCCTCCTTCTTTGCTTCTTCAGTATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGCCAGGTCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTTTTTACAATAGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTCG] consensusID : consensus_10140#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 259 fasta sequence [TTTTTTGTTTTTTTTTAAAACAGTGTCACCATAATATTACCAGAAAGGCCAGTACAAATTACAGGTAATAACACTAAAAGTTGATTTAACAGCTCAATCACACGAGATCTATAAGTTATTACGAGATCTTGTCAATTAAGTGGACAGTTGAGCGCCCACTTTACAGCTTCTTCAACAGCTCGGGCGCCGCCTTCATTGCTTCTTCAGTATCCAAGTCACCTTCCGTAAATTCTACCACTTTATGACAATAATGGTTAGC] [+] EMBL AI394989 [TTTTTTGTTTTTTTTTAAAACAGTGTCACCATAATATTACCAGAAAGGCCAGTACAAATTACAGGTAATAACACTAAAAGTTGATTTAACAGCTCAATCACACGAGATCTATAAGTTATTACGAGATCTTGTCAATTAAGTGGACAGTTGAGCGCCCACTTTACAGCTTCTTCAACAGCTCGGGCGCCGCCTTCATTGCTTCTTCAGTATCCAAGTCACCTTCCGTAAATTCTACCACTTTATGACAATAATGGTTAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10140#0 CCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTC 60 consensus_10140#1 CCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTC 60 consensus_10140#2 --------TTTTTTGTTTTTTTTTAAAACAGTGTCACCATAATATTACCAGAAAGGCCAG 52 ***** * * * * * * ** * * * ** * ** consensus_10140#0 GGTGGTTCACCATAATATTACCAGAAAGGCCAGTAGAAATTACAGATAATAACACTAAAA 120 consensus_10140#1 GGTGGTTCACC------------GAAAAAC------------------GTAGCGGCGAAC 90 consensus_10140#2 TACAAATTACAGGTAATAACACTAAAAGTTGAT---------------TTAACAGCTCAA 97 * ** *** ** * * consensus_10140#0 GTTGATTTAAAAACTCAATCACACGAAAAATATAAGTTATTACGAGATCTTGTCAATTAA 180 consensus_10140#1 TTTCGCTTTA---------TCCATGGGAGAT------------------CTGTCAATTAA 123 consensus_10140#2 TCACACGAGA---------TCTATAAGTTAT---------TACGAGATCTTGTCAATTAA 139 * * ** ********** consensus_10140#0 TTGGACAGATGAAAAAACACTTTACAGCTTCTTCAACAGCTCGGACGCCTCCTTCTTTGC 240 consensus_10140#1 TTGGACAGATGAAAAAACACTTTACAGCTTCTTCAACAGCTCGGACGCCTCCTTCTTTGC 183 consensus_10140#2 GTGGACAGTTGAGCGCCCACTTTACAGCTTCTTCAACAGCTCGGGCGCCGCCTTCATTGC 199 ******* *** *************************** **** ***** **** consensus_10140#0 TTCTTCAGTATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGC 300 consensus_10140#1 TTCTTCAGTATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGC 243 consensus_10140#2 TTCTTCAGTATCCAAGTCACCTTCCGTAAATTCTACCACTTTATGACAATAATGGTTAGC 259 ******************* *************** ****************** ***** consensus_10140#0 CAGATCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTTTTTACAAT 360 consensus_10140#1 CAGGTCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTTTTTACAAT 303 consensus_10140#2 ------------------------------------------------------------ consensus_10140#0 AGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGA 420 consensus_10140#1 AGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGA 363 consensus_10140#2 ------------------------------------------------------------ consensus_10140#0 TGTCGGTGGTTCACCGAAAAACGTACCGGAGAACTTTCGCTTTATCCATGGGAGATCTGT 480 consensus_10140#1 TGTCG------------------------------------------------------- 368 consensus_10140#2 ------------------------------------------------------------ consensus_10140#0 CACTTCGAAACACCATCTCCCAAGAGCGTGCAACGTCACAAAGTCGACAGGATCTGTTTT 540 consensus_10140#1 ------------------------------------------------------------ consensus_10140#2 ------------------------------------------------------------ consensus_10140#0 TATGGCTTTCACCCAATGATTCTTCATCTTAAAAGAATTTTCTATTCGCTTATTTATTCC 600 consensus_10140#1 ------------------------------------------------------------ consensus_10140#2 ------------------------------------------------------------ consensus_10140#0 TTCAATTTCTGATGATAAGTTCAAAAATATTCCGTACCAAGAGTTGCATTTAGAACTTTC 660 consensus_10140#1 ------------------------------------------------------------ consensus_10140#2 ------------------------------------------------------------ consensus_10140#0 TGGATCTATTCGAAGCCCTTCATCACAAGCTGACAGACCTTCTTCGATGTATTTTTTATA 720 consensus_10140#1 ------------------------------------------------------------ consensus_10140#2 ------------------------------------------------------------ consensus_10140#0 CACTTGTTGATCGTTTTTACCCAATGAGTTAGCTAAATTTCTGCAGCTATGTGCCTTCCT 780 consensus_10140#1 ------------------------------------------------------------ consensus_10140#2 ------------------------------------------------------------ consensus_10140#0 CCTAGTTCAATTCAGGATGCTTATTATTGCTTATTGCATGAGACATATACATCGTATGCT 840 consensus_10140#1 ------------------------------------------------------------ consensus_10140#2 ------------------------------------------------------------ consensus_10140#0 TGTTTGTATTTTTTAGAAATCAAGCTTTTGCCATTCTGTAATTACACCGTCCATAGCGTT 900 consensus_10140#1 ------------------------------------------------------------ consensus_10140#2 ------------------------------------------------------------ consensus_10140#0 AATTTGCTTATCGAGGCCAACCTCGTGC 928 consensus_10140#1 ---------------------------- consensus_10140#2 ---------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||