|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10141#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 695 fasta sequence
[TTTTTTTTTTTTTTTTTTTAATTTGGAAAATATCTATTTTTTATGCCTGTGTATACAATAATATTCATTCAATTGCAATAGACGCTCCAACCTCTTCTAATACTTTCTTTATTTGTTCAGCTTCGTCCTTGCTCACATCAGTCTTTATATTGGCAGGCGCACTTTCTACAAACTTTTTAGCTTGTACGAGATTCATCTCTGGAATAACTTGTTTGATCTCTTTAATAAGCTGGATTTTCTTTGCGGCATCGAATTTTACTAGCTTGACCGAAAACGCTGTTTTCGTAGGCGCTTGCTGTTCTTCAGGCTCTTCAACAGGTTGATTTATTGGCGCTTGACCCATCATAGGCATCACGGGTCCCGTATTCTTGATGTTTAACTTTTTTTGTAGCAATTCTGACAAGTCTGCGACTTCTAATAATGTTAGGGAACTGATGCGATTTACAATCTCATGTATGTGTTTCGGATACTCCTTATTATCAGCGCTTAAGGAAGGAGGGACTAAATCTTTATCTGCCCCCAAATTTGTTGCCA-TTTGCGTATATGGTTTTGAAAAGCCATTATAAAACGAACAGTGAGAGACGATTCTGCCGAATTTTAACAGGTTCATGGCTGAAAATGTGGGAGCTATAACGGGATCTGGTTGGTGCGCTGCACGTGGTGTTTAACCTGCCCGCCCGGAATGGAAAGTCCCT]
[+] EMBL AI395806 [TTTTTTTTTTTTTTTTTTTAATTTGGAAAATATCTATTTTTTATGCCTGTGTATACAATAATATTCATTCAATTGCAATAGACGCTCCAACCTCTTCTAATACTTTCTTTATTTGTTCAGCTTCGTCCTTGCTCACATCAGTCTTTATATTGGCAGGCGCACTTTCTACAAACTTTTTAGCTTGTACGAGATTCATCTCTGGAATAACTTGTTTGATCTCTTTAATAAGCTGGCTTTTCTTTGCGGCATCGAATTTTACTAGCTTGACCGAAAACGCTGTTTTCGTAGGCGCTTGCTGTTCTTCAGGCTCTTCAACAGGTTGATTTATTGGCGCTTGACCCATCATAGGCATCACGGGTCCCGTATTCTTGATGTTTAACTTTTTTTGTAGCAATTCTGACAAGTCTGCGACTTCTAATAATGTTAGGGAACTGATGCGATTTACAATCTCATGTATGTGTTTCGGATACTCCTTACTATC ]
[+] EMBL AI394854 [ TTTTTATTTTTTTTAATTTGGAAAATATCTATTTTTTATGCCTGTGTATACAATAATATTCATTCAATTGCAATACACGCTCCAACCTCTTCTAATACTTTCTTTATTTGTTCAGCTTCGTCCTTGCTCACATCAGTCTTTATATTGGCAGGCGCACTTTCTACAAACTTTTTAGCTTGTACGAGATTCATCTCTGGAATAACTTGTTTGATCTCTTTAATAAGCTGGATTTTCTTTGCGGCATCGAATTTTACTAGCTTGACCGATAGCGCTGTTTTCGTACGTGCTTGCTGTTCTTCAGGCTCTTCAAGAGGTTGATTTATTGGCGCTTGACCCATCATACGCATCACGGGTCCCGTATTCTTGATGTATANCTTTTTTTGTGGCAATTCTGACAAGTCTGCGACTTCTAATAATGTTAGGGAACTGATGCGATTTACAATCTCATGTATGTGTTTCGGATACTCATTAGTACCAGCGCTTAGAGAAGGATGGACTAAATCTTTATCTGCCCCCAAAGTTGTTGCCATTTTGCGTATATGGg ]
[-] EMBL CD080594 [ ATATCTATTTTTTATGCCTGTGTATACAATAATATTCATTCAATTGCAATAGACGCTCCAACCTCTTCTAATACTTTCTTTATTTGTTCAGCTTCGTCCTTGCTCACATCAGTCTTTATATTGGCAGGCGCACTTTCTACAAACTTTTTAGCTTGTACGAGATTCATCTCTGGAATAACTTGTTTGATCTCTTTAATAAGCTGGATTTTCTTTGCGGCATCGAATTTTACTAGCTTGACCGAAAACGCTGTTTTCGTAGGCGCTTGCTGTTCTTCAGGCTCTTCAACAGGTTGATTTATTGGCGCTTGACCCATCATAGGCATCACGGGTCCCGTATTCTTGATGTTTAACTTTTTTTGTAGCAATTCTGACAAGTCgcct ]
[-] EMBL CD146037 [ ATACAATAATATTCATTCAATTGCAATAGACGCTCCAACCTCTTCTAATACTTTCTTTACTTGTTCAGCTTCGTCCTTGCTCACATCAGTCTTTATATTGGCAGGCGCACTTTCTACAAACTTTTTAGCTTGTACGAGATTCATCTCTGGAATAACTTGTTTGATCTCTTTAATAAGCTGGATTTTCTTTGCGGCATCGAATTTTACTAGCTTGACCGAAAACGCTGTTTTCGTAGGAGCTTGCT ]
[+] EMBL CD136561 [ ATATTGGCAGGCGCACTCTCTACAAACTTTTTAGCTTGTACGAGATTCATCTCTGGAATAACTTGTTTGATCTCTTTAATAAGCTGGATTTTCTTTGCGGCATCGAATTTTACCAGCTTGACCGAAAACGCTGTTTTCGTAGGCGCTAGCTGTTCTTCAGGCTCTTCAACAGGTTGATTTATTGGCGCTTGACCCATCATAG ]
[-] EMBL CD129695 [ gaTCATGTCTGGATAAACTTGTCTGATCTCTTTAATAAGCTGGATGTTCTGTGAGGCATCGAATTGTCCTAGCTTGACCGAAACCGCTGTTTTCGTAGGCGCATCCTG TCTTCAGGCTCTTCGACAGGTTGATTGATTGGCGCTTGACACATCATAGGCATCACGGGTCCCGTATTCTTGATGTTTACCTTATTTTGTAGCAATTCTGACAAGTCTGCGACTTCTAATAATGTTAGGGATCTGATGCGATTTACAATCTCATGTATGTGTTTCGGATACTCCTTATTATCAGCGCTTAAGGAAGGAGGGACTAAATCTTTATCTGCCACCAAATTTGTTGCCA TTTGCGTATATGGTTTTGAAAAGCCATTATAGAACGAACAGTGAGAGACGATTCTGCCGAATTTTAACAGGTTCATGGCTGAAAATGTGGc ]
[+] EMBL CD067966 [ ACTTGTTTGATCTCTTTAATAAGCTGGATTTTCTTTGCGGCATCGAATTTTACTAGCTTGACCGAAAACGCTGTTTTCGTAGGCGCTTGCTGTTCTTCAGGCTCTTCAACAGGTTGATTTATTGGCGCTTGACCCATCATAGGCATCACGGGTCCCGTATTCTTGATGTTTAACTTTTTTTGTAGCAATTCTGACAAGTCTGCGACTTCTAATAATGTTAGGGAACTGATGCGATTTACAATCTCATGTATGTGTTTCGGATACTCCTTATTATCAGCGCTTAAGGAAGGAGGGACTAAATCTTTATCTGCCCCCAAATTTGTTGCCA TTTGCGTATATGGTTTTGAAAAGCCATTATAAAACGAACAGTGAGAGACGATTCTGCCGAATTTTAACAGGTTCATGGCTGAAAATGTGG ]
[-] EMBL CD192843 [ AGCTTGACCGAAAACGCTGTTTTCGTAGGCGCTTGCTGTTCTTCAGGCTCTTCAACAGGTTGATTTATTGGCGCTTGACCCATCATAGGCATCACGGGTCCCGTATTCTTGATGTTTAACTTTTTTTGTAGCAATTCTGGCAAGTCTGCGACTTCTAATA ]
[+] EMBL CD170677 [ AGGCATCACGGGTCCCGTATTCTTGATGTTTAACTTTTTTTGTAGCAATTCTGACATGTCTGCGACTTCTAATAATGTTAGGGAACTGATGCGATTTACAATCTCATGTATGTGTTTCGGATACTCCTTATTATCAGCGCTTAAGGAAGGAGGGACTAAATCTTTATCTGCCCCCAAATTTGTTGCCA TTTGCGTATATNGTTTTGAAAAGCCATTATAAAACGAACAGTGAGAGACGATTCTGCCGAATTTTAACAGGTTCATGGCTGAAAATGTGGGAGCTATAACGGGATCTGGTTGGTGCGCTGCACGTGGTGTTTAACCTGCCCGCCCGGAATGGAAAGTCCCT]
[+] EMBL CD136284 [ AATAATGTTAGGGAACTGATGCGATTTACAATCTCATGTATGTGTTTCGGATACTCCTTATTATCAGCGCTTAAGGAAGGAGGGACTAAATCTTTATCTGCCCCCAAATTTGTTGCCA TTTGCGTATATGGTTTTGAAAAGCCATTATAAA ]
[+] EMBL CD136323 [ AATAATGTTAGGGAACTGATGCGATTTACAATCTCATGTATGTGTTTCGGATACTCCTTATTATCAGCGCTTAAGGAAGGAGGGACTAAATCTTTATCTGCCCCCAAATTTGTTGCCA TTTGCGTATATGGTTTTGAAAAGCCATTATAAA ]
[-] EMBL CD095149 [ ATGTTAGGGAACTGATGCGATTTACAATCTCATGTATGTGTTTCGGATACTCCTTATTATCAGCGCTTAAGGAAGGAGGGACTAAATCTTTATCTGCCCCCAAATTTGTTGCCA TTTGCGTATATGGTTTTGAAAAGCCATTATAAAACGAACAGTGAGAGACGATTCTGCCGAATTTTAACAGGTTCATGGCTGAAAATGTGGGAGCTATAACGGGATCTGGTTGGTGCGCCACCCGTGccac ]
consensusID : consensus_10141#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence
[TTTTTTTTTTTTTTTTAATTTGGGAAATATCTATTTTTTATGCCTGTGTATACAATAATATTCATTCAATTGCAATAGACGCTCCAACCTCTTCTAATACTTTCTTTATTTGTTCAGCTTCGTCCTTGCTCACATCAGTCTTTATATTGGCAGGCGCACTTTCTACAAACTTTTTAACTTGTACGAGATTCATCTCTGGAATAACTTGTTTGATCTCTTTAATAAGCTGGATTTTCTTTGCGGCATCGAATTTTACTAGCTTGACCGAAAACGCTGTTTTCGTANGCGCTTGCTGTTCCTCAGGCTCTTCAACAGGTTGATTTAGTGGCGCTTGACCCATCATAAGCATCATCGGTCCCGGCTCCGTGCCGAATCTTGGGCTCCAAGGGCAAATTCCCTAAAATGGGTCCGTTTAAATCCGAGACAAGGCAGTACGTTTCTCTGTGTGGAATTGTTTTTCCGGCAAATTTTCACAG]
[+] EMBL AI395042 [TTTTTTTTTTTTTTTTAATTTGGGAAATATCTATTTTTTATGCCTGTGTATACAATAATATTCATTCAATTGCAATAGACGCTCCAACCTCTTCTAATACTTTCTTTATTTGTTCAGCTTCGTCCTTGCTCACATCAGTCTTTATATTGGCAGGCGCACTTTCTACAAACTTTTTAACTTGTACGAGATTCATCTCTGGAATAACTTGTTTGATCTCTTTAATAAGCTGGATTTTCTTTGCGGCATCGAATTTTACTAGCTTGACCGAAAACGCTGTTTTCGTANGCGCTTGCTGTTCCTCAGGCTCTTCAACAGGTTGATTTAGTGGCGCTTGACCCATCATAAGCATCATCGGTCCCGGCTCCGTGCCGAATCTTGGGCTCCAAGGGCAAATTCCCTAAAATGGGTCCGTTTAAATCCGAGACAAGGCAGTACGTTTCTCTGTGTGGAATTGTTTTTCCGGCAAATTTTCACAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10141#0 TTTTTTTTTTTTTTTTTTTAATTTGGAAAATATCTATTTTTTATGCCTGTGTATACAATA 60
consensus_10141#1 ---TTTTTTTTTTTTTTTTAATTTGGGAAATATCTATTTTTTATGCCTGTGTATACAATA 57
*********************** *********************************
consensus_10141#0 ATATTCATTCAATTGCAATAGACGCTCCAACCTCTTCTAATACTTTCTTTATTTGTTCAG 120
consensus_10141#1 ATATTCATTCAATTGCAATAGACGCTCCAACCTCTTCTAATACTTTCTTTATTTGTTCAG 117
************************************************************
consensus_10141#0 CTTCGTCCTTGCTCACATCAGTCTTTATATTGGCAGGCGCACTTTCTACAAACTTTTTAG 180
consensus_10141#1 CTTCGTCCTTGCTCACATCAGTCTTTATATTGGCAGGCGCACTTTCTACAAACTTTTTAA 177
***********************************************************
consensus_10141#0 CTTGTACGAGATTCATCTCTGGAATAACTTGTTTGATCTCTTTAATAAGCTGGATTTTCT 240
consensus_10141#1 CTTGTACGAGATTCATCTCTGGAATAACTTGTTTGATCTCTTTAATAAGCTGGATTTTCT 237
************************************************************
consensus_10141#0 TTGCGGCATCGAATTTTACTAGCTTGACCGAAAACGCTGTTTTCGTAGGCGCTTGCTGTT 300
consensus_10141#1 TTGCGGCATCGAATTTTACTAGCTTGACCGAAAACGCTGTTTTCGTANGCGCTTGCTGTT 297
*********************************************** ************
consensus_10141#0 CTTCAGGCTCTTCAACAGGTTGATTTATTGGCGCTTGACCCATCATAGGCATCACGGGTC 360
consensus_10141#1 CCTCAGGCTCTTCAACAGGTTGATTTAGTGGCGCTTGACCCATCATAAGCATCATCGGTC 357
* ************************* ******************* ****** ****
consensus_10141#0 CCGTATTCTTGATGTTTAACTTTTTTTGTAGCAATTCTGACAAGTCTGCGACTTCTAATA 420
consensus_10141#1 CCGGCTCCGTGCCGAATCTTGGGCTCCAAGGGCAAATTCCCTAAAATGGGTCCGTTTAAA 417
*** * * ** * * * * * * * * ** * * * * *
consensus_10141#0 ATGTTAGGGAACTGATGCGATTTACAATCTCATGTATGTGTTTCGGATACTCCTTATTAT 480
consensus_10141#1 TCCGAGACAAGGCAGTACGTTTCTCTGTGTGGAATTGTTTTTCCGGCAAATTTTCACAG- 476
* * ** ** * * * * * ** *** * * * *
consensus_10141#0 CAGCGCTTAAGGAAGGAGGGACTAAATCTTTATCTGCCCCCAAATTTGTTGCCATTTGCG 540
consensus_10141#1 ------------------------------------------------------------
consensus_10141#0 TATATGGTTTTGAAAAGCCATTATAAAACGAACAGTGAGAGACGATTCTGCCGAATTTTA 600
consensus_10141#1 ------------------------------------------------------------
consensus_10141#0 ACAGGTTCATGGCTGAAAATGTGGGAGCTATAACGGGATCTGGTTGGTGCGCTGCACGTG 660
consensus_10141#1 ------------------------------------------------------------
consensus_10141#0 GTGTTTAACCTGCCCGCCCGGAATGGAAAGTCCCT 695
consensus_10141#1 -----------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||