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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10145#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1495 fasta sequence
[TCACCTTATACAACAAGTAGTAAAGAAGAGGTTAATACTGCTCCTCCAGACGATGCCAGTTTCTTGCCACCTAGTCGCCATTTAGCTTCCCTACTTCATATGCTGGCTGACTCTCGTGTTTTAAGTGTTGGAGAGTTAGACGAGATCACTGTCTTTATCCAGGAGCGAAAGCGTCGTCTAGAAGGCCGACGAAATACCAACAGTGATGCCGGTGCATGCAGTGAAAATACAGCTGAGCTCAAGTCAAGAATTTTAAGCATGCTTTATCCTCAGTCTGTTAGCTCTACTGTAACTACAGACACTGCTTCTTCCAATCTACCAGTTGATGCGGCTCATCAAACTCAAGATTTAACAGCTACTAGTATTGGAAGTAAATTAGCTGAAAACTTAACCAACCCTATTGTACAAAAAGCCATAGATACGTTAATGTCATATCCTTCAAACTCTATGCCTCAAACTTCAACGCAAAAGTCACATAGTGCTATGGATACACAAAATATGCAATCTAAGAACTCTTTTCGCAACAGTATAAAGCCGCATTCTTCATTAGCGATTACTGCATATCCACCCAGTTGTATGAAACAACCTACCAGCTGGAGCTATGAAGATAATGGTTTTCGACCAAGTCGACCACTCATTTCCAATGACTTGAGTCAGCATGTCCCTTATGGACAGCATACCAGACCTAACATGA-TC----CAGCAGCGTGAATATCCCAGTGACGAATCGCGAAAGGGTGCTGGTTTCATAGAACATGGAGTTCAAAGAGGTGCTTATCACTCTGAATTCGAAGTAAATGAACCAG-TTCTTGATTCAAATGAAGAGTTCACAGAAGAAAGTGCTTATCCAGGTTGGCCCAGGAGAAAACGAAAAAAGCGAGGTTGTAAAGCTCCCTCGGGGGATTCGTATCAATATCTGGACCCTAAGAGTTTCTCACGTCAAAACGTTGACCAACAATCTCAACAACCTGTAGATCTTATGTCTACGGAGGTTCATCCAGTCGGTACTGTAGCCGAAGCATATAAATATTCTCAAGCTACCCCCCTCATATTCAATTCAGGAGTCCGTGGTAGATCTCAAAGAATAACCGGTGGAAGTTCATCCTATAACAATTACAATTATCAATCATTTGGATCGCATCAGCCGAATAATTTGAATCTTCATACCCAATTTTATGGTTATCCCAATCCATCTTCATTTTATTAGCACTTCTACTAGTAAAATCTGTGTCCTGTAAGATTAGTTCAGTTTTTTTCAACATATTTACATTTGAACATATTTTGCTAAATGTTATTGTAATTAATTTTTTAACACAAAGTGCTCATATCAACTTTTTTGGGAAGATGAAGAAGGCAAAGAAGATACAAAAAAACCTACATAATTTTCTTTCCATTTAGAGAATGGGTTGATTTTTTCAGTGTTTGTGTTGTATCACGTCATCCTGTATTGTTAATTAGAATTCATCATTTTCACTATCTTTGGCTAAAATAACAACATA]
[+] EMBL CD122257 [TCACCTTATACAACAAGTAGTAAAGAAGAGGTTAATACTGCTCCTCCAGACGATGCCAGTTTCTTGCCACCTAGTCGCCATTTAGCTTCCCTACTTCATATGCTGGCTGACTCTCGTGTTTTAAGTGTTGGAGAGTTAGACGAGATCACTGTCTTTATCCAGGAGCGAAAGCGTCGTCTAGAAGGCCGACGAAATACCAACAGTGATGCCGGTGCATGCAGTGAAAATACAGCTGAGCTCAAGTCAAGAATTTTAAGCATGCTTTATCCTCAGTCTGTTAGCTCTACTGTAACTACAGACACTGCTTCTTCCAATCTACCAGTTGATGCGGCTCATCAAACTCAAGATTTAACAGCTACTAGTATTGGAAGTAAATTAGCTGAAAACTTAACCAACCCTATTGTACAAAAAGCCATAGATACGTT ]
[+] EMBL CD183078 [ GAGAGTTAGACGAGATCACTGTCTTTATCCAGGAGCGGAAGCGTCGTCTAGAAGGCCGACGAAATACCAACAGTGATGCCGGTGCATGCAGTGAAAATACAGCTGAGCTCAAGTCAAGAATTTTAAGCATGCTTTATCCTCAGTCTGTTAGCTCTACTGTAACTACAGACACTGCTTCTTCCAATCTACCAGTTGATGCGGCTCATCAAACTCAAGATTTAACAGCTACTAGTATTGGAAGTAAATTAGCTGAAAACTTAACCAACCC ]
[-] EMBL CD170731 [ ACAGCTGAGCTCAAGTCAAGAATTTTAAGCATGCTTTATCCTCAGTCTGTTAGCTCTACTGTAACTACAGACACTGCTTCTTCCAATCTACCAGTTGATGCGGCTCATCAAACTCAAGATTTAACAGCTACTAGTATTGGAAGTAAATTAGCTGAAAACTTAACCAACCCTATTGTACAAAAAGCCATAGATACGTTAATGTCATATCCTTCAAACTCTATGCCTCAAACTTCAACGCAAAAGTCACATAGTGCTATGGATACACAAAATATGCAATCTAAGAACTCTTTTCGCAACAGTATAAAGCCGCATTCTTCATTAGCGATTACTGCATATCCACCCAGTTGTATGAAACAACCTACCAGCTGGAGCTATGAAGATAATG ]
[-] EMBL CD170701 [ AAGCATGCTTTATCCTCAGTCTGTTAGCTCTACTGTAACTACAGACACTGCTTCTTCCAATCTACCAGTTGATGCGGCTCATCAAACTCAAGATTTAACAGCTACTAGTATTGGAAGTAAATTAGCTGAAAACTTAACCAACCCTATTGTACAAAAAGCCATAGATACGTTAATGTCATATCCTTCAAACTCTATGCCTCAAACTTCAACGCAAAAGTCACATAGTGCTATGGATACACAAAATATGCAATCTAAGAACTCTTTTCGCAACAGTATAAAGCCGCATTCTTCATTAGCGATTACTGCATATCCACCCAGTTGTATGAAACAACCTACCAGCTGGAGCTATGAAGATAATG ]
[+] EMBL CD111772 [ tacccggTTCTTACAATCTACCAGTTGATGCGGCTCATCAAACTCAAGATTTAACAGCTACTAGTATTGGAAGTAAATTAGCTGAAAACTTAACCAACCCTATTGTACAAAAAGCCATAGATACGTTAATGTCATATCCTTCAAACTCTATGCCTCAAACTTCAACGCAAAAGTCACATAGTGCTATGGATACACAAAATATGCAATCTAAGAACTCTTTTCGCAACAGTATAAAGCCGCATTCTTCATTAGCGATTACTGCATATCCACCCAGTTGTATGAAACGACCTACCAGCTGGAGCTATGAAGATAATGGTTTTCGACCAAGTCGACCACTCATTTCCAATGACTTGAGTCAGCATGTCCCTTATGGACAGCATACCAGACCTAACATGA TC CAGCAGCGTGAATATCCCAGTGACGAATCGCGAAAGGGTGCTGGTTTCATAGAACATGGAGTTCAAAGAGGTGCTTATCACTCTGAATTCGAAGTACATGAACCAG TTCTTGATTCCAATGAAGAG TCACAGAAGAAAGTGCTTTTCC CGTTGGCCCA GAGAAAACGAAAAAA CGCGGTgggga ]
[+] EMBL CD136189 [ CAAGATTTAACAGCTACTGGTATTGGAAGTAAATTAGCTGAAAACTTAACCAACCCTATTGTACAAAAAGCCATAGATACGTTAATGTCATATCCTTCAAACTCTATGCCTCAAACTTCAACGCAAAAGTCACATAGTGCTATGGATACACAAAATATGCAATCTAAGAACTCTTTTCGCAACAGTATA ]
[+] EMBL CD083066 [ TTCATTAGCGATTACTGCATATCCACCCAGTTGTATGAAACAACCTACCAGCTGGAGCTATGAAGATAATGGTTTTCGACCAAGTCGACCACTCATTTCCAATGACTTGAGTCAGCATGTCCCTTATGGACAGCATACCAGACCTAACATGA TC CAGCAGCGTGAATATCCCAGTGACGAATCGCGAAAGGGTGCTGGTTTCATAGAACATGGAGTTCAAAGAGGTGCTTATCACTCTGAATTCGAAGTAAATGAACCAG TTCTTGATTCAAATGAAGAGTTCACAGAAGAAAGTGCTTATCCAGGTTGGCCCAGGAGAAAACGAAAAAAGCGAGGTTGTAAAGCTCCCTCGGGGGATTCGTATCAATATCTGGACCCTAAGAGTTTCTCACGTCAAAACGTTGACCAACAATCTCAACAACCTGTAGATCTTATGTCTACGGAGGTTCATCCAGTCGGTACTGTAGCCGAAGCATATAAATATTCTCAAGCTACCCCCCTCATATTCAATTCAGGAGTCCGTGGTAGATCTCAA ]
[+] EMBL AI740296 [ CATATCCACCCAGTTGTATGAAACAACCTACCAGCTGGAGCTATGAAGATAATGGTTTTCGACCAAGTCGACCACTCATTTCCAATGACTTGAGTCAGCATGTCCCTTATGGACAGCATACCAGACCTAACATGACTCAGCACAGTAGCGTGAATATCCCAGTGACGAATCGCGAAAGGGTGCTGGTTTCATAGAACATGGAGTTCAAAGAGGTGCTTATCACTCTGAATTCGAAGTAAATGAACCAG TTCTTGATTCAAATGAAGAGTTCACAGAAGAAAGTGCTTATCAAGGTTGGCC ]
[-] EMBL CD141019 [ GAGGTGCTTATCACTCTGAATTCGAAGTAAATG ACCAGTTTCTTGATTCAAATGAAGAGTTCACAGAAGAAAGTGCTTATCCAGGTTGGCCCAGGAGAAAACGAAAAAAGCGAGGTTGTAAAGCTCCCTCGGGGGATTCGTATCAATATCTGGACCCTAAGAGTTTCTCACGTCAAAACGTTGACCAACAATCTCAACAACCTGTAGATCTTATGTCTACGGAGGTTCATCCAGTCGGTACTGTAGCCGAAGCATATAAATATTCTCAAGCTACCCCCCTCATATTCAATTCAGGAGTCCGTGGTAGATCTCAAAGA ]
[+] EMBL CD077482 [ gaggATCACTCTGAATTCGAAGTAAATGAACCAG TTCTTGATTCAAATGAAGAGTTCACAGAAGAAAGTGCTTATCCAGGTTGGCCCAGGAGAAAACGAAAAAAGCGAGGTTGTAAAGCTCCCTCGGGGGATTCGTATCAATATCTGGACCCTAAGAGTTTCTCACGTCAAAACGTTGACCAACAATCTCAACAACCTGTAGATCTTATGTCTACGGAGGTTCATCCAGTCGGTACTGTAGCCGAAGCATATAAATATTCTCAAGCTACCCCCCTCATATTCAATTCAGGAGTCCGTGGTAGATCTCAAAGAATAACCGGTGGAAGTTCATCCTATAACAATTACAATTATCAATCATTTGGATCGCATCAGCCGAAT ]
[-] EMBL CD076639 [ CTTATGTCTACGGAGGTTCATCCAGTCGGTACTGTAGCCGAAGCATATAAATATTCTCAAGCTACCCCCCTCATATTCAATTCAGGAGTCCGTGGTAGATCTCAAAGAATAACCGGTGGAAGTTCATCCTATAACAATTACAATTATCAATCATTTGGATCGCATCAGCCGAATAATTTGAATCTTCATACCCAATTTTATGGTTATCCCAATCCATCTTCATTTTATTAGCACTTCTACTAGTAAAATCTGTGTCCTGTAAGATTAGTTCAGTTTTTTTCAACATATTTACATTTGAACATATTTTGCTAAATGTTATTGTAATTAATTTTTTAACACAAAGTGCTCATATCAACTTTTTTGGGAAGATGAAGAAGGCAAAGAAGATACAAAAAAACCTACATAATTTTCTTTCCATTTAGAGAATGGGTTGATTTTTTCAGTGTTTGTGTTGTATCACGTCATCCTGTATTGTTAATTAGAATTCATCATTTTCACTATCTTTGGCTAAAATAACAACATA]
[-] EMBL CD143164 [ TACGGAGGTTCATCCAGTCGGTACTGTAGCCGAAGCATATAAATATTCTCAAGCTACCCNCCTCATATTCAATTCAGGAGTCCGTGGTAGATCTCAAAGAATAACCGGTGGAAGTTCATCCTATAACAATTACAATTATCAATCATTTGGATCGCATCAGCCGAATAATTTGAATCTTCATACCCAATCTTATGGTTATCCCAATCCATCTTCATTTTATTAGCACTTCTACTAGTAAAATCTGTGTCCTGTAAGATTAGTTCAGTTTTTTTCAACATATTTACATTTGAACATATTTTGCTAAATGTTATTGTAATTAATTTTTTAACACAAAGTGCTCATA ]
consensusID : consensus_10145#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence
[CGGCACGAGGCTTATGGACAGCATACCAGACCTAACATGATCCAGCAGCGTGAATATCCCAGTGACGAATCGCGAAAGGGTGCTGGTTTCATAGAACATGGAGTTCAAAGAGGTGCTTATCACTCTGAATTCGAAGTAAATGAACCAGTTCTTGATTCAAATGAAGAGTTCACAGAAGAAAGTGCTTATCCAGGTTGGCCCAGGAGAAAACGAAAAAAGCGAGGTTGTAAAGCTCCCTCGGGGGATTCGTATCAATATCTGGACCCTAAGAGTTTCTCACGTCAAAACGTTGACCAACAATCTCAACAACCTGTAGATCTTATGTCTACGGGAGTTCATCCAGTCGGTACTGTAGCCGAGCATATAAATATTCTCAA]
[+] EMBL CD078002 [CGGCACGAGGCTTATGGACAGCATACCAGACCTAACATGATCCAGCAGCGTGAATATCCCAGTGACGAATCGCGAAAGGGTGCTGGTTTCATAGAACATGGAGTTCAAAGAGGTGCTTATCACTCTGAATTCGAAGTAAATGAACCAGTTCTTGATTCAAATGAAGAGTTCACAGAAGAAAGTGCTTATCCAGGTTGGCCCAGGAGAAAACGAAAAAAGCGAGGTTGTAAAGCTCCCTCGGGGGATTCGTATCAATATCTGGACCCTAAGAGTTTCTCACGTCAAAACGTTGACCAACAATCTCAACAACCTGTAGATCTTATGTCTACGGGAGTTCATCCAGTCGGTACTGTAGCCGAGCATATAAATATTCTCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10145#0 TCACCTTATACAACAAGTAGTAAAGAAGAGGTTAATACTGCTCCTCCAGACGATGCCAGT 60
consensus_10145#1 ------------------------------------------------------------
consensus_10145#0 TTCTTGCCACCTAGTCGCCATTTAGCTTCCCTACTTCATATGCTGGCTGACTCTCGTGTT 120
consensus_10145#1 ------------------------------------------------------------
consensus_10145#0 TTAAGTGTTGGAGAGTTAGACGAGATCACTGTCTTTATCCAGGAGCGAAAGCGTCGTCTA 180
consensus_10145#1 ------------------------------------------------------------
consensus_10145#0 GAAGGCCGACGAAATACCAACAGTGATGCCGGTGCATGCAGTGAAAATACAGCTGAGCTC 240
consensus_10145#1 ------------------------------------------------------------
consensus_10145#0 AAGTCAAGAATTTTAAGCATGCTTTATCCTCAGTCTGTTAGCTCTACTGTAACTACAGAC 300
consensus_10145#1 ------------------------------------------------------------
consensus_10145#0 ACTGCTTCTTCCAATCTACCAGTTGATGCGGCTCATCAAACTCAAGATTTAACAGCTACT 360
consensus_10145#1 ------------------------------------------------------------
consensus_10145#0 AGTATTGGAAGTAAATTAGCTGAAAACTTAACCAACCCTATTGTACAAAAAGCCATAGAT 420
consensus_10145#1 ------------------------------------------------------------
consensus_10145#0 ACGTTAATGTCATATCCTTCAAACTCTATGCCTCAAACTTCAACGCAAAAGTCACATAGT 480
consensus_10145#1 ------------------------------------------------------------
consensus_10145#0 GCTATGGATACACAAAATATGCAATCTAAGAACTCTTTTCGCAACAGTATAAAGCCGCAT 540
consensus_10145#1 ------------------------------------------------------------
consensus_10145#0 TCTTCATTAGCGATTACTGCATATCCACCCAGTTGTATGAAACAACCTACCAGCTGGAGC 600
consensus_10145#1 ------------------------------------------------------------
consensus_10145#0 TATGAAGATAATGGTTTTCGACCAAGTCGACCACTCATTTCCAATGACTTGAGTCAGCAT 660
consensus_10145#1 ------------------------------------------------------CGGCAC 6
* ***
consensus_10145#0 GTCCCTTATGGACAGCATACCAGACCTAACATGATCCAGCAGCGTGAATATCCCAGTGAC 720
consensus_10145#1 GAGGCTTATGGACAGCATACCAGACCTAACATGATCCAGCAGCGTGAATATCCCAGTGAC 66
* ********************************************************
consensus_10145#0 GAATCGCGAAAGGGTGCTGGTTTCATAGAACATGGAGTTCAAAGAGGTGCTTATCACTCT 780
consensus_10145#1 GAATCGCGAAAGGGTGCTGGTTTCATAGAACATGGAGTTCAAAGAGGTGCTTATCACTCT 126
************************************************************
consensus_10145#0 GAATTCGAAGTAAATGAACCAGTTCTTGATTCAAATGAAGAGTTCACAGAAGAAAGTGCT 840
consensus_10145#1 GAATTCGAAGTAAATGAACCAGTTCTTGATTCAAATGAAGAGTTCACAGAAGAAAGTGCT 186
************************************************************
consensus_10145#0 TATCCAGGTTGGCCCAGGAGAAAACGAAAAAAGCGAGGTTGTAAAGCTCCCTCGGGGGAT 900
consensus_10145#1 TATCCAGGTTGGCCCAGGAGAAAACGAAAAAAGCGAGGTTGTAAAGCTCCCTCGGGGGAT 246
************************************************************
consensus_10145#0 TCGTATCAATATCTGGACCCTAAGAGTTTCTCACGTCAAAACGTTGACCAACAATCTCAA 960
consensus_10145#1 TCGTATCAATATCTGGACCCTAAGAGTTTCTCACGTCAAAACGTTGACCAACAATCTCAA 306
************************************************************
consensus_10145#0 CAACCTGTAGATCTTATGTCTACGGAGGTTCATCCAGTCGGTACTGTAGCCGAAGCATAT 1020
consensus_10145#1 CAACCTGTAGATCTTATGTCTACGGGAGTTCATCCAGTCGGTACTGTAGCCGA-GCATAT 365
************************* ************************** ******
consensus_10145#0 AAATATTCTCAAGCTACCCCCCTCATATTCAATTCAGGAGTCCGTGGTAGATCTCAAAGA 1080
consensus_10145#1 AAATATTCTCAA------------------------------------------------ 377
************
consensus_10145#0 ATAACCGGTGGAAGTTCATCCTATAACAATTACAATTATCAATCATTTGGATCGCATCAG 1140
consensus_10145#1 ------------------------------------------------------------
consensus_10145#0 CCGAATAATTTGAATCTTCATACCCAATTTTATGGTTATCCCAATCCATCTTCATTTTAT 1200
consensus_10145#1 ------------------------------------------------------------
consensus_10145#0 TAGCACTTCTACTAGTAAAATCTGTGTCCTGTAAGATTAGTTCAGTTTTTTTCAACATAT 1260
consensus_10145#1 ------------------------------------------------------------
consensus_10145#0 TTACATTTGAACATATTTTGCTAAATGTTATTGTAATTAATTTTTTAACACAAAGTGCTC 1320
consensus_10145#1 ------------------------------------------------------------
consensus_10145#0 ATATCAACTTTTTTGGGAAGATGAAGAAGGCAAAGAAGATACAAAAAAACCTACATAATT 1380
consensus_10145#1 ------------------------------------------------------------
consensus_10145#0 TTCTTTCCATTTAGAGAATGGGTTGATTTTTTCAGTGTTTGTGTTGTATCACGTCATCCT 1440
consensus_10145#1 ------------------------------------------------------------
consensus_10145#0 GTATTGTTAATTAGAATTCATCATTTTCACTATCTTTGGCTAAAATAACAACATA 1495
consensus_10145#1 -------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||